Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_33965 Sequoiadendron giganteum HOM05D000108 ORTHO05D009193 3.8e-79 298.1 153 100.0
AagrBONN_evm.TU.Sc2ySwM_344.1349 Anthoceros agrestis HOM05D000108 ORTHO05D009193 1.3e-26 123.6 83 72.3
SMO228G0201 Selaginella moellendorffii HOM05D000108 ORTHO05D009193 2.2e-26 122.9 82 72.0
Mapoly0026s0062 Marchantia polymorpha HOM05D000108 ORTHO05D009193 7.0e-25 117.9 83 69.9
AagrBONN_evm.TU.Sc2ySwM_369.137 Anthoceros agrestis HOM05D000108 ORTHO05D009193 1.2e-24 117.1 81 71.6
Pp3c1_32120 Physcomitrium patens HOM05D000108 ORTHO05D009193 3.0e-23 112.5 83 66.3
Pp3c2_3070 Physcomitrium patens HOM05D000108 ORTHO05D009193 3.9e-23 112.1 83 67.5
TAR381G0662 Trochodendron aralioides HOM05D000108 ORTHO05D009193 5.0e-23 111.7 80 70.0
ATR0767G184 Amborella trichopoda HOM05D000108 ORTHO05D009193 1.9e-22 109.8 82 64.6
Aqoxy6G00610 Aquilegia oxysepala HOM05D000108 ORTHO05D009193 2.5e-22 109.4 80 67.5
Nn5g29136 Nelumbo nucifera HOM05D000108 ORTHO05D009193 2.5e-22 109.4 82 64.6
Dinv26989 Davidia involucrata HOM05D000108 ORTHO05D009193 1.2e-21 107.1 82 64.6
Nn1g05956 Nelumbo nucifera HOM05D000108 ORTHO05D009193 2.1e-21 106.3 80 65.0
GSVIVG01003703001 Vitis vinifera HOM05D000108 ORTHO05D009193 2.1e-21 106.3 80 62.5
Gohir.A11G210000 Gossypium hirsutum HOM05D000108 ORTHO05D009193 1.8e-20 103.2 80 68.8
QL06p037786 Quercus lobata HOM05D000108 ORTHO05D009193 1.8e-20 103.2 80 68.8
MELO3C007683.2 Cucumis melo HOM05D000108 ORTHO05D009193 2.3e-20 102.8 86 61.6
CsaV3_6G044610 Cucumis sativus L. HOM05D000108 ORTHO05D009193 4.0e-20 102.1 82 63.4
Dinv36996 Davidia involucrata HOM05D000108 ORTHO05D009193 4.0e-20 102.1 82 61.0
ClCG01G018080 Citrullus lanatus HOM05D000108 ORTHO05D009193 5.2e-20 101.7 86 61.6
Haze_03948 Corylus avellana HOM05D000108 ORTHO05D009193 5.2e-20 101.7 80 67.5
Hma1.2p1_0723F.1_g208800 Hydrangea macrophylla HOM05D000108 ORTHO05D009193 5.2e-20 101.7 82 62.2
Actinidia11938 Actinidia chinensis HOM05D000108 ORTHO05D009193 6.8e-20 101.3 82 62.2
CARHR158690 Cardamine hirsuta HOM05D000108 ORTHO05D009193 6.8e-20 101.3 81 64.2
Cfa006811 Carpinus fangiana HOM05D000108 ORTHO05D009193 6.8e-20 101.3 80 67.5
Atru.chr3.1121 Acer truncatum HOM05D000108 ORTHO05D009193 8.9e-20 100.9 82 62.2
Atru.chr3.1130 Acer truncatum HOM05D000108 ORTHO05D009193 8.9e-20 100.9 82 62.2
BcaB02g09599 Brassica carinata HOM05D000108 ORTHO05D009193 1.2e-19 100.5 81 64.2
Migut.L00441 Erythranthe guttata HOM05D000108 ORTHO05D009193 1.2e-19 100.5 86 60.5
Nitab4.5_0000093g0180 Nicotiana tabacum HOM05D000108 ORTHO05D009193 1.2e-19 100.5 80 63.8
AT3G49650 Arabidopsis thaliana HOM05D000108 ORTHO05D009193 1.5e-19 100.1 81 64.2
Solyc02g091780.1 Solanum lycopersicum HOM05D000108 ORTHO05D009193 1.5e-19 100.1 80 63.8
Sopen02g036360 Solanum pennellii HOM05D000108 ORTHO05D009193 1.5e-19 100.1 80 63.8
AL5G29500 Arabidopsis lyrata HOM05D000108 ORTHO05D009193 2.0e-19 99.8 81 63.0
Carub.0005s1600 Capsella rubella HOM05D000108 ORTHO05D009193 2.0e-19 99.8 81 63.0
Cpa.g.sc129.33 Carica papaya HOM05D000108 ORTHO05D009193 2.0e-19 99.8 81 64.2
Thhalv10010126m.g Eutrema salsugineum HOM05D000108 ORTHO05D009193 2.0e-19 99.8 81 63.0
PSO675G7990 Papaver somniferum HOM05D000108 ORTHO05D009193 2.0e-19 99.8 80 63.8
Peaxi162Scf00939g00122 Petunia axillaris HOM05D000108 ORTHO05D009193 2.0e-19 99.8 80 63.8
THA.LOC104798446 Tarenaya hassleriana HOM05D000108 ORTHO05D009193 2.0e-19 99.8 82 62.2
Thecc.01G081700 Theobroma cacao HOM05D000108 ORTHO05D009193 2.0e-19 99.8 80 65.0
A06p28360 Brassica napus HOM05D000108 ORTHO05D009193 2.6e-19 99.4 81 63.0
BraA06t25778Z Brassica rapa HOM05D000108 ORTHO05D009193 2.6e-19 99.4 81 63.0
Gorai.007G229100 Gossypium raimondii HOM05D000108 ORTHO05D009193 2.6e-19 99.4 80 66.2
Sed0028177 Sechium edule HOM05D000108 ORTHO05D009193 2.6e-19 99.4 86 61.6
SGA_v2.0_scaffold527G52726 Striga asiatica HOM05D000240 ORTHO05D009193 2.6e-19 99.4 80 61.2
Manes.13G105500 Manihot esculenta HOM05D000108 ORTHO05D009193 3.4e-19 99.0 80 63.8
Lj2C427T2 Lonicera japonica HOM05D000108 ORTHO05D009193 4.4e-19 98.6 80 62.5
TWI53G1622 Tripterygium wilfordii HOM05D000108 ORTHO05D009193 4.4e-19 98.6 80 63.8
Aa31LG4G18130 Aethionema arabicum HOM05D000108 ORTHO05D009193 5.8e-19 98.2 81 63.0
BcaC01g02425 Brassica carinata HOM05D000108 ORTHO05D009193 5.8e-19 98.2 81 61.7
C03p65430 Brassica napus HOM05D000108 ORTHO05D009193 5.8e-19 98.2 81 61.7
BolC3t18795H Brassica oleracea HOM05D000108 ORTHO05D009193 5.8e-19 98.2 81 61.7
Gohir.D11G213200 Gossypium hirsutum HOM05D000108 ORTHO05D009193 5.8e-19 98.2 80 66.2
CiPaw.07G041200 Carya illinoinensis HOM05D000108 ORTHO05D009193 7.5e-19 97.8 80 63.8
FvH4_1g18770 Fragaria vesca HOM05D000108 ORTHO05D009193 7.5e-19 97.8 86 61.6
FAN19G2730 Fragaria x ananassa HOM05D000108 ORTHO05D009193 7.5e-19 97.8 86 61.6
Oeu024999.2 Olea europaea HOM05D000108 ORTHO05D009193 7.5e-19 97.8 80 63.8
RcHm_v2.0_Chr2g0109641 Rosa chinensis HOM05D000108 ORTHO05D009193 9.8e-19 97.4 86 60.5
HPP92_015697 Vanilla planifolia HOM05D000108 ORTHO05D009193 9.8e-19 97.4 82 61.0
Zm00001eb059040 Zea mays HOM05D000108 ORTHO05D009193 9.8e-19 97.4 82 59.8
CANSAT01G1422 Cannabis sativa HOM05D000108 ORTHO05D009193 1.3e-18 97.1 80 62.5
CAN.G1061.13 Capsicum annuum HOM05D000108 ORTHO05D009193 1.3e-18 97.1 77 63.6
PGR102G2530 Punica granatum HOM05D000108 ORTHO05D009193 1.3e-18 97.1 80 63.8
FAN26G1911 Fragaria x ananassa HOM05D000108 ORTHO05D009193 1.7e-18 96.7 86 60.5
FAN28G2709 Fragaria x ananassa HOM05D000108 ORTHO05D009193 1.7e-18 96.7 86 60.5
MSTRG.15336 Avicennia marina HOM05D000108 ORTHO05D009193 2.2e-18 96.3 80 61.2
Cc07_g07690 Coffea canephora HOM05D000108 ORTHO05D009193 2.2e-18 96.3 80 61.2
Lsat_1_v5_gn_4_158941 Lactuca sativa HOM05D000108 ORTHO05D009193 2.2e-18 96.3 82 61.0
ECA232G0770 Erigeron canadensis HOM05D000108 ORTHO05D009193 3.7e-18 95.5 82 59.8
CDE04G1408 Ceratophyllum demersum HOM05D000108 ORTHO05D009193 4.9e-18 95.1 82 54.9
HanXRQChr09g0263031 Helianthus annuus HOM05D000108 ORTHO05D009193 4.9e-18 95.1 82 59.8
Rhsim10G0085500 Rhododendron simsii HOM05D000108 ORTHO05D009193 4.9e-18 95.1 82 58.5
HPP92_026665 Vanilla planifolia HOM05D000108 ORTHO05D009193 4.9e-18 95.1 82 59.8
COL.COLO4_11662 Corchorus olitorius HOM05D000070 ORTHO05D009193 6.4e-18 94.7 86 59.3
MD01G1046900 Malus domestica HOM05D000108 ORTHO05D009193 6.4e-18 94.7 86 58.1
Os03g0773600 Oryza sativa ssp. japonica HOM05D000108 ORTHO05D009193 6.4e-18 94.7 82 58.5
unitig_88.g27717 Utricularia gibba HOM05D000108 ORTHO05D009193 8.3e-18 94.4 80 60.0
MD15G1305400 Malus domestica HOM05D000108 ORTHO05D009193 1.9e-17 93.2 86 58.1
Duzib147G1569 Durio zibethinus HOM05D000108 ORTHO05D009193 3.2e-17 92.4 80 61.2
Sc16g0000820 Simmondsia chinensis HOM05D000108 ORTHO05D009193 5.4e-17 91.7 76 60.5
MD16G1282300 Malus domestica HOM05D000108 ORTHO05D009193 9.2e-17 90.9 86 57.0
Manes.12G119900 Manihot esculenta HOM05D000108 ORTHO05D009193 1.2e-16 90.5 82 56.1
SEGI_21022 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 2.7e-16 89.4 80 68.8
vmacro05468 Vaccinium macrocarpon HOM05D000240 ORTHO05D009193 1.0e-15 87.4 89 55.1
SEGI_02055 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 3.0e-15 85.9 80 66.2
DCAR_010765 Daucus carota HOM05D000108 ORTHO05D009193 6.6e-15 84.7 80 56.2
SalBow7G4148 Salvia bowleyana HOM05D000108 ORTHO05D009193 8.6e-15 84.3 80 57.5
Hund16608 Selenicereus undatus HOM05D000108 ORTHO05D009193 1.5e-14 83.6 77 53.2
Ciclev10027176m.g Citrus clementina HOM05D000108 ORTHO05D009193 3.3e-14 82.4 64 65.6
Cre13.g602400 Chlamydomonas reinhardtii HOM05D000108 ORTHO05D009193 1.4e-12 77.0 80 52.5
PRCOL_00002151 Prasinoderma coloniale HOM05D000108 ORTHO05D009193 7.1e-09 64.7 81 46.9
MCO15G225 Micromonas commoda HOM05D000240 ORTHO05D009193 1.6e-08 63.5 72 47.2
SEGI_03465 Sequoiadendron giganteum HOM05D002811 ORTHO05D003053 8.6e-07 57.8 55 60.0
SEGI_05476 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 7.3e-06 54.7 42 78.6


User provided reference genes

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