Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 4.6e-132 474.6 240 100.0
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 1.0e-62 244.2 161 82.6
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 2.6e-50 203.0 158 69.0
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 9.9e-50 201.1 149 66.4
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 1.7e-49 200.3 150 68.0
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 4.9e-49 198.7 149 65.1
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 7.1e-48 194.9 150 61.3
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 1.3e-46 190.7 156 66.0
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 1.8e-46 190.3 158 65.8
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 1.8e-46 190.3 161 61.5
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 1.8e-46 190.3 152 63.8
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.3e-46 189.9 153 64.1
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 2.3e-46 189.9 154 64.9
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 3.0e-46 189.5 150 64.7
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 3.0e-46 189.5 154 64.3
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 3.9e-46 189.1 146 65.8
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 3.9e-46 189.1 150 64.7
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 5.1e-46 188.7 173 57.2
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 6.7e-46 188.3 156 66.0
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 6.7e-46 188.3 160 61.9
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 6.7e-46 188.3 160 61.9
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 8.7e-46 188.0 154 64.9
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.1e-45 187.6 160 61.9
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.1e-45 187.6 154 64.3
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 1.1e-45 187.6 154 64.3
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 1.5e-45 187.2 136 68.4
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 1.5e-45 187.2 150 63.3
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 1.5e-45 187.2 150 63.3
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 1.5e-45 187.2 160 61.2
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 1.9e-45 186.8 129 72.9
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 1.9e-45 186.8 150 64.0
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 3.3e-45 186.0 156 62.8
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 5.6e-45 185.3 130 73.1
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 7.4e-45 184.9 154 64.3
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 1.3e-44 184.1 136 69.1
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 2.1e-44 183.3 154 63.6
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 2.1e-44 183.3 154 63.6
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.1e-44 183.3 121 74.4
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 2.8e-44 183.0 149 63.1
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 3.7e-44 182.6 160 59.4
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 4.8e-44 182.2 154 62.3
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 8.1e-44 181.4 152 61.8
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 8.1e-44 181.4 148 63.5
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 1.1e-43 181.0 152 61.8
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 1.4e-43 180.6 161 59.0
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.4e-43 180.6 129 71.3
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 1.4e-43 180.6 157 60.5
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 1.4e-43 180.6 157 61.1
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 2.4e-43 179.9 154 61.0
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 3.1e-43 179.5 141 62.4
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 9.0e-43 177.9 128 68.0
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 1.2e-42 177.6 154 61.0
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 1.5e-42 177.2 161 57.8
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 2.0e-42 176.8 136 65.4
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 2.0e-42 176.8 148 61.5
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 3.4e-42 176.0 155 59.4
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 3.4e-42 176.0 146 63.0
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 4.5e-42 175.6 149 61.1
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 5.8e-42 175.3 158 58.9
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 5.8e-42 175.3 153 60.1
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 5.8e-42 175.3 146 61.6
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 7.6e-42 174.9 156 59.0
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 7.6e-42 174.9 121 71.1
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 2.2e-41 173.3 152 59.2
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 3.8e-41 172.6 147 59.9
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 4.9e-41 172.2 155 57.4
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 6.4e-41 171.8 189 52.4
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 6.4e-41 171.8 129 66.7
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 1.1e-40 171.0 153 58.8
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 1.4e-40 170.6 150 60.0
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 1.4e-40 170.6 155 60.0
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 1.4e-40 170.6 155 58.1
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 1.9e-40 170.2 163 56.4
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 4.2e-40 169.1 150 60.0
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 5.5e-40 168.7 150 59.3
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 7.1e-40 168.3 122 68.9
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 7.1e-40 168.3 136 63.2
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 1.6e-39 167.2 151 59.6
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 2.1e-39 166.8 148 58.1
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 2.1e-39 166.8 129 66.7
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 2.7e-39 166.4 140 65.0
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 2.7e-39 166.4 162 56.2
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 7.9e-39 164.9 156 53.8
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 1.3e-38 164.1 136 62.5
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 1.3e-38 164.1 122 69.7
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 2.3e-38 163.3 136 62.5
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 3.0e-38 162.9 136 62.5
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 3.0e-38 162.9 144 59.7
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 6.7e-38 161.8 129 65.9
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 2.5e-37 159.8 150 57.3
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 2.5e-37 159.8 150 57.3
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 3.3e-37 159.5 137 61.3
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 4.3e-37 159.1 129 62.0
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 4.3e-37 159.1 99 77.8
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 5.6e-37 158.7 150 57.3
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 5.6e-37 158.7 116 69.0
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 5.6e-37 158.7 154 58.4
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 7.4e-37 158.3 136 63.2
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 9.6e-37 157.9 144 58.3
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 9.6e-37 157.9 144 58.3
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 1.6e-36 157.1 129 62.8
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 2.1e-36 156.8 129 62.0
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 2.8e-36 156.4 136 61.0
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 2.8e-36 156.4 136 60.3
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 3.7e-36 156.0 144 57.6
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 8.2e-36 154.8 132 61.4
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 1.4e-35 154.1 132 62.9
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 1.4e-35 154.1 132 62.9
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 2.4e-35 153.3 132 62.9
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 4.0e-35 152.5 125 64.8
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 5.3e-35 152.1 99 72.7
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 6.9e-35 151.8 125 64.8
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 9.0e-35 151.4 119 68.1
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 1.3e-33 147.5 99 70.7
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 3.8e-33 146.0 119 63.9
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 1.1e-32 144.4 107 68.2
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 1.9e-32 143.7 99 69.7
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 1.9e-29 133.7 99 69.7
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 4.3e-29 132.5 99 65.7
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 4.8e-28 129.0 107 64.5
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 4.8e-28 129.0 98 68.4
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 3.8e-25 119.4 108 60.2
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 9.3e-24 114.8 104 59.6
Atru.chr1.2818 Acer truncatum HOM05D005569 ORTHO05D007052 1.8e-22 110.5 77 68.8
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 5.1e-22 109.0 135 45.2
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 4.8e-20 102.4 134 41.8
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 2.6e-18 96.7 138 39.1
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 2.6e-18 96.7 86 60.5
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 3.4e-18 96.3 77 64.9
HPP92_023858 Vanilla planifolia HOM05D005569 ORTHO05D007052 1.1e-13 81.3 49 81.6
Duzib235G0081 Durio zibethinus HOM05D005569 ORTHO05D007052 4.4e-13 79.3 51 78.4
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 4.4e-13 79.3 49 83.7
SEGI_21494 Sequoiadendron giganteum HOM05D011039 ORTHO05D000001 5.7e-13 79.0 67 49.3
SEGI_28669 Sequoiadendron giganteum HOM05D000764 ORTHO05D002006 7.4e-13 78.6 66 56.1
SEGI_12263 Sequoiadendron giganteum HOM05D000506 ORTHO05D000369 1.3e-12 77.8 60 60.0
unitig_899.g14763 Utricularia gibba HOM05D000070 ORTHO05D003301 4.1e-11 72.8 51 68.6
SEGI_16424 Sequoiadendron giganteum HOM05D000159 ORTHO05D000148 6.9e-11 72.0 41 80.5
SEGI_40825 Sequoiadendron giganteum HOM05D000764 ORTHO05D384927 4.5e-10 69.3 62 53.2
SEGI_19337 Sequoiadendron giganteum HOM05D000222 ORTHO05D014681 1.3e-09 67.8 43 74.4
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 1.9e-08 63.9 98 42.9
SEGI_34441 Sequoiadendron giganteum HOM05D011039 ORTHO05D000001 2.5e-08 63.5 43 69.8
SEGI_14460 Sequoiadendron giganteum HOM05D013743 ORTHO05D017118 5.5e-08 62.4 35 71.4
SEGI_25483 Sequoiadendron giganteum HOM05D003053 ORTHO05D003431 7.2e-08 62.0 58 46.6
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 4.7e-07 59.3 48 62.5
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 4.7e-07 59.3 48 62.5
SEGI_20611 Sequoiadendron giganteum HOM05D001456 ORTHO05D004886 1.0e-06 58.2 57 47.4
SEGI_22024 Sequoiadendron giganteum HOM05D001684 ORTHO05D001613 1.0e-06 58.2 59 44.1
SEGI_15625 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 2.3e-06 57.0 40 60.0


User provided reference genes

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