Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_33917 Sequoiadendron giganteum HOM05D001677 ORTHO05D050997 4.9e-41 170.6 82 100.0
SEGI_04557 Sequoiadendron giganteum HOM05D001677 ORTHO05D050997 1.0e-30 136.3 66 95.5
SEGI_24881 Sequoiadendron giganteum HOM05D001677 ORTHO05D001682 2.1e-28 128.6 65 92.3
SEGI_21781 Sequoiadendron giganteum HOM05D001677 ORTHO05D001682 1.5e-26 122.5 65 86.2
SEGI_08318 Sequoiadendron giganteum HOM05D001677 ORTHO05D001682 4.2e-24 114.4 65 83.1
SEGI_07744 Sequoiadendron giganteum HOM05D001677 ORTHO05D001682 1.6e-12 75.9 65 52.3
ATR0582G005 Amborella trichopoda HOM05D001677 ORTHO05D001682 1.8e-11 72.4 60 56.7
ECA246G3205 Erigeron canadensis HOM05D001677 ORTHO05D001682 1.2e-10 69.7 61 52.5
Lj5C825G4 Lonicera japonica HOM05D001677 ORTHO05D001682 2.6e-10 68.6 59 52.5
Cfa018740 Carpinus fangiana HOM05D001677 ORTHO05D001682 4.5e-10 67.8 61 52.5
Lj5C789T2 Lonicera japonica HOM05D001677 ORTHO05D001682 4.5e-10 67.8 59 52.5
Manes.14G047228 Manihot esculenta HOM05D001677 ORTHO05D001682 5.8e-10 67.4 68 50.0
Os12g0477700 Oryza sativa ssp. japonica HOM05D001677 ORTHO05D001682 5.8e-10 67.4 63 50.8
CSS0028172 Camellia sinensis var. sinensis HOM05D001677 ORTHO05D001682 1.0e-09 66.6 64 45.3
ATR0582G233 Amborella trichopoda HOM05D001677 ORTHO05D001682 1.3e-09 66.2 72 48.6
AUR62034977 Chenopodium quinoa HOM05D001677 ORTHO05D001682 2.2e-09 65.5 78 42.3
Os11g0514000 Oryza sativa ssp. japonica HOM05D001677 ORTHO05D001682 2.2e-09 65.5 65 47.7
TWI23G0548 Tripterygium wilfordii HOM05D001677 ORTHO05D001682 2.2e-09 65.5 61 49.2
Lsat_1_v5_gn_5_10340 Lactuca sativa HOM05D001677 ORTHO05D001682 2.9e-09 65.1 61 50.8
QL10p001571 Quercus lobata HOM05D001677 ORTHO05D001682 2.9e-09 65.1 62 53.2
SEGI_19738 Sequoiadendron giganteum HOM05D001677 ORTHO05D001682 2.9e-09 65.1 75 44.0
CANSAT80G2817 Cannabis sativa HOM05D001677 ORTHO05D001682 3.8e-09 64.7 72 41.7
Cfa018739 Carpinus fangiana HOM05D001677 ORTHO05D001682 3.8e-09 64.7 63 49.2
Gohir.D11G040900 Gossypium hirsutum HOM05D001677 ORTHO05D001682 3.8e-09 64.7 61 49.2
Manes.14G047284 Manihot esculenta HOM05D001677 ORTHO05D001682 3.8e-09 64.7 68 48.5
CANSAT56G3174 Cannabis sativa HOM05D001677 ORTHO05D001682 5.0e-09 64.3 72 41.7
CiPaw.12G002200 Carya illinoinensis HOM05D001677 ORTHO05D001682 6.5e-09 63.9 61 45.9
THA.LOC104821528 Tarenaya hassleriana HOM05D001677 ORTHO05D001682 6.5e-09 63.9 58 51.7
Thecc.03G136300 Theobroma cacao HOM05D001677 ORTHO05D001682 6.5e-09 63.9 61 49.2
CiPaw.12G002400 Carya illinoinensis HOM05D001677 ORTHO05D001682 1.1e-08 63.2 61 45.9
HanXRQChr05g0157711 Helianthus annuus HOM05D001677 ORTHO05D001682 1.1e-08 63.2 61 49.2
Lsat_1_v5_gn_5_10520 Lactuca sativa HOM05D001677 ORTHO05D001682 1.1e-08 63.2 59 49.2
CiPaw.16G063700 Carya illinoinensis HOM05D001677 ORTHO05D001682 1.4e-08 62.8 62 48.4
Gohir.A11G037600 Gossypium hirsutum HOM05D001677 ORTHO05D001682 1.4e-08 62.8 61 47.5
COL.COLO4_16669 Corchorus olitorius HOM05D001677 ORTHO05D001682 1.9e-08 62.4 61 49.2
Gorai.007G044000 Gossypium raimondii HOM05D001677 ORTHO05D001682 1.9e-08 62.4 61 49.2
GSVIVG01009279001 Vitis vinifera HOM05D001677 ORTHO05D001682 1.9e-08 62.4 72 44.4
MBI11_g34374_MAGBIO Magnolia biondii HOM05D001677 ORTHO05D001682 2.5e-08 62.0 63 50.8
GSVIVG01008603001 Vitis vinifera HOM05D001677 ORTHO05D001682 2.5e-08 62.0 57 50.9
CiPaw.16G063600 Carya illinoinensis HOM05D001677 ORTHO05D001682 3.2e-08 61.6 62 46.8
Haze_07129 Corylus avellana HOM05D001677 ORTHO05D001682 4.2e-08 61.2 61 47.5
Aa31LG4G17320 Aethionema arabicum HOM05D001677 ORTHO05D001682 5.5e-08 60.8 60 45.0
Ciclev10030487m.g Citrus clementina HOM05D001677 ORTHO05D001682 5.5e-08 60.8 61 47.5
HanXRQChr05g0157671 Helianthus annuus HOM05D001677 ORTHO05D001682 5.5e-08 60.8 59 47.5
QL10p001595 Quercus lobata HOM05D001677 ORTHO05D001682 5.5e-08 60.8 59 50.8
CiPaw.11G003000 Carya illinoinensis HOM05D001677 ORTHO05D001682 7.1e-08 60.5 61 47.5
Ca_23173_v3 Cicer arietinum L. HOM05D001677 ORTHO05D001682 7.1e-08 60.5 61 45.9
Cfa018734 Carpinus fangiana HOM05D001677 ORTHO05D001682 9.3e-08 60.1 61 45.9
CiPaw.16G062900 Carya illinoinensis HOM05D001677 ORTHO05D001682 9.3e-08 60.1 62 45.2
Ca_23175_v3 Cicer arietinum L. HOM05D001677 ORTHO05D001682 9.3e-08 60.1 61 45.9
Psat0s409g0040 Pisum sativum HOM05D001677 ORTHO05D001682 9.3e-08 60.1 61 47.5
Haze_07127 Corylus avellana HOM05D001677 ORTHO05D001682 1.2e-07 59.7 61 45.9
Zm00001eb114050 Zea mays HOM05D001677 ORTHO05D001682 1.2e-07 59.7 65 47.7
Cfa018735 Carpinus fangiana HOM05D001677 ORTHO05D001682 1.6e-07 59.3 61 45.9
Cfa018738 Carpinus fangiana HOM05D001677 ORTHO05D001682 1.6e-07 59.3 61 45.9
Lj5C792G1 Lonicera japonica HOM05D001677 ORTHO05D001682 1.6e-07 59.3 59 45.8
Psat4g207000 Pisum sativum HOM05D001677 ORTHO05D001682 1.6e-07 59.3 61 47.5
Cfa018737 Carpinus fangiana HOM05D001677 ORTHO05D001682 2.1e-07 58.9 63 44.4
Duzib205G1638 Durio zibethinus HOM05D001677 ORTHO05D001682 2.1e-07 58.9 57 47.4
Oeu042468.2 Olea europaea HOM05D001677 ORTHO05D001682 2.1e-07 58.9 65 41.5
Potri.015G102200 Populus trichocarpa HOM05D001677 ORTHO05D001682 2.1e-07 58.9 59 44.1
Sp2g11380 Schrenkiella parvula HOM05D001677 ORTHO05D001682 2.1e-07 58.9 60 45.0
ClCG06G018190 Citrullus lanatus HOM05D001677 ORTHO05D001682 2.7e-07 58.5 61 47.5
Potri.015G103100 Populus trichocarpa HOM05D001677 ORTHO05D001682 2.7e-07 58.5 62 43.5
EL10Ac1g02337 Beta vulgaris HOM05D001677 ORTHO05D001682 3.5e-07 58.2 65 43.1
Lsat_1_v5_gn_5_10560 Lactuca sativa HOM05D001677 ORTHO05D001682 3.5e-07 58.2 78 41.0
MD08G1076000 Malus domestica HOM05D001677 ORTHO05D001682 3.5e-07 58.2 63 46.0
Medtr8g011200 Medicago truncatula HOM05D001677 ORTHO05D001682 3.5e-07 58.2 67 43.3
Rhsim10G0093900 Rhododendron simsii HOM05D001677 ORTHO05D001682 3.5e-07 58.2 71 39.4
DCAR_026252 Daucus carota HOM05D001677 ORTHO05D001682 4.6e-07 57.8 61 49.2
Potri.015G102700 Populus trichocarpa HOM05D001677 ORTHO05D001682 4.6e-07 57.8 60 43.3
Ciclev10030485m.g Citrus clementina HOM05D001677 ORTHO05D001682 6.1e-07 57.4 61 47.5
Haze_07699 Corylus avellana HOM05D001677 ORTHO05D001682 6.1e-07 57.4 61 45.9
Lj5g0002166 Lotus japonicus HOM05D001677 ORTHO05D001682 6.1e-07 57.4 59 47.5
Lj5g0016973 Lotus japonicus HOM05D001677 ORTHO05D001682 6.1e-07 57.4 59 47.5
LjContig00445g0016036 Lotus japonicus HOM05D001677 ORTHO05D001682 6.1e-07 57.4 59 47.5
Nn3g16347 Nelumbo nucifera HOM05D001677 ORTHO05D001682 6.1e-07 57.4 65 46.2
Sed0021934 Sechium edule HOM05D001677 ORTHO05D001682 6.1e-07 57.4 62 45.2
Atru.chr5.2723 Acer truncatum HOM05D001677 ORTHO05D001682 7.9e-07 57.0 59 42.4
Haze_07697 Corylus avellana HOM05D001677 ORTHO05D001682 7.9e-07 57.0 61 45.9
Dinv11210 Davidia involucrata HOM05D001677 ORTHO05D001682 7.9e-07 57.0 61 44.3
Glyma.03G091100 Glycine max HOM05D001677 ORTHO05D001682 7.9e-07 57.0 59 47.5
GSVIVG01008605001 Vitis vinifera HOM05D001677 ORTHO05D001682 7.9e-07 57.0 61 44.3
AT3G48770 Arabidopsis thaliana HOM05D001677 ORTHO05D001682 1.0e-06 56.6 61 44.3
BcaC06g34372 Brassica carinata HOM05D001677 ORTHO05D001682 1.0e-06 56.6 60 41.7
A06p18920 Brassica napus HOM05D001677 ORTHO05D001682 1.0e-06 56.6 60 45.0
C07p29760 Brassica napus HOM05D001677 ORTHO05D001682 1.0e-06 56.6 60 41.7
BolC8t50006H Brassica oleracea HOM05D001677 ORTHO05D001682 1.0e-06 56.6 60 45.0
BraA06t24974Z Brassica rapa HOM05D001677 ORTHO05D001682 1.0e-06 56.6 60 45.0
DCAR_026240 Daucus carota HOM05D001677 ORTHO05D001682 1.0e-06 56.6 59 45.8
Thhalv10010053m.g Eutrema salsugineum HOM05D001677 ORTHO05D001682 1.0e-06 56.6 60 43.3
Os11g0514100 Oryza sativa ssp. japonica HOM05D001677 ORTHO05D001682 1.0e-06 56.6 61 45.9
QL05p049365 Quercus lobata HOM05D001677 ORTHO05D001682 1.0e-06 56.6 59 47.5
vmacro19152 Vaccinium macrocarpon HOM05D001677 ORTHO05D001682 1.0e-06 56.6 59 42.4
Ciclev10030486m.g Citrus clementina HOM05D001677 ORTHO05D001682 1.3e-06 56.2 60 45.0
Duzib084G0945 Durio zibethinus HOM05D001677 ORTHO05D001682 1.3e-06 56.2 59 45.8
Lalb_Chr09g0328741 Lupinus albus HOM05D001677 ORTHO05D001682 1.3e-06 56.2 59 45.8
Nn1g06301 Nelumbo nucifera HOM05D001677 ORTHO05D001682 1.3e-06 56.2 65 44.6
Prupe.5G145600 Prunus persica HOM05D001677 ORTHO05D001682 1.3e-06 56.2 70 41.4
Atru.chr6.1884 Acer truncatum HOM05D001677 ORTHO05D001682 1.8e-06 55.8 59 42.4
Ca_23174_v3 Cicer arietinum L. HOM05D001677 ORTHO05D001682 1.8e-06 55.8 61 44.3
Lalb_Chr16g0384991 Lupinus albus HOM05D001677 ORTHO05D001682 1.8e-06 55.8 61 45.9
Medtr6g015173 Medicago truncatula HOM05D001677 ORTHO05D001682 1.8e-06 55.8 65 40.0
Sabra15G0122400 Salix brachista HOM05D001677 ORTHO05D001682 1.8e-06 55.8 59 42.4
Atru.chr2.541 Acer truncatum HOM05D001677 ORTHO05D001682 2.3e-06 55.5 59 42.4
CiPaw.12G002600 Carya illinoinensis HOM05D001677 ORTHO05D001682 2.3e-06 55.5 62 41.9
Lj1g0023217 Lotus japonicus HOM05D001677 ORTHO05D001682 2.3e-06 55.5 59 44.1
Lj5g0011496 Lotus japonicus HOM05D001677 ORTHO05D001682 2.3e-06 55.5 59 44.1
Lj5g0014641 Lotus japonicus HOM05D001677 ORTHO05D001682 2.3e-06 55.5 59 44.1
Prupe.5G145400 Prunus persica HOM05D001677 ORTHO05D001682 2.3e-06 55.5 69 43.5
RcHm_v2.0_Chr4g0412151 Rosa chinensis HOM05D001677 ORTHO05D001682 2.3e-06 55.5 63 42.9
CANSAT80G2052 Cannabis sativa HOM05D001677 ORTHO05D001682 3.0e-06 55.1 59 44.1
Cpa.g.sc4.136 Carica papaya HOM05D001677 ORTHO05D001682 3.0e-06 55.1 61 45.9
DCAR_026246 Daucus carota HOM05D001677 ORTHO05D001682 3.0e-06 55.1 59 44.1
Lj4C168G4 Lonicera japonica HOM05D001677 ORTHO05D001682 3.0e-06 55.1 53 50.9
TPR.G28991 Trifolium pratense HOM05D001677 ORTHO05D001682 3.0e-06 55.1 61 42.6
CSS0014974 Camellia sinensis var. sinensis HOM05D001677 ORTHO05D001682 3.9e-06 54.7 61 42.6
CSS0035392 Camellia sinensis var. sinensis HOM05D001677 ORTHO05D001682 3.9e-06 54.7 61 42.6
Medtr8g011330 Medicago truncatula HOM05D001677 ORTHO05D001682 3.9e-06 54.7 59 45.8
TPR.G10117 Trifolium pratense HOM05D001677 ORTHO05D001682 3.9e-06 54.7 61 45.9
Dinv23192 Davidia involucrata HOM05D001677 ORTHO05D001682 5.1e-06 54.3 61 41.0
Lj5g0013644 Lotus japonicus HOM05D001677 ORTHO05D001682 5.1e-06 54.3 59 42.4
Phvul.010G032400 Phaseolus vulgaris HOM05D001677 ORTHO05D001682 5.1e-06 54.3 59 44.1
Psat4g206840 Pisum sativum HOM05D001677 ORTHO05D001682 5.1e-06 54.3 61 42.6
vmacro07667 Vaccinium macrocarpon HOM05D001677 ORTHO05D001682 5.1e-06 54.3 61 41.0
Ah.11g047240 Amaranthus hybridus HOM05D001677 ORTHO05D001682 6.7e-06 53.9 61 42.6
C08p23800 Brassica napus HOM05D001677 ORTHO05D001682 6.7e-06 53.9 60 43.3
CSS0007435 Camellia sinensis var. sinensis HOM05D001677 ORTHO05D001682 6.7e-06 53.9 61 41.0
AUR62039337 Chenopodium quinoa HOM05D001677 ORTHO05D001682 6.7e-06 53.9 64 43.8
MELO3C026178.2 Cucumis melo HOM05D001677 ORTHO05D001682 6.7e-06 53.9 60 45.0
Hma1.2p1_0424F.1_g150350 Hydrangea macrophylla HOM05D001677 ORTHO05D001682 6.7e-06 53.9 73 39.7
Medtr8g011210 Medicago truncatula HOM05D001677 ORTHO05D001682 6.7e-06 53.9 79 38.0
PSO017G6869 Papaver somniferum HOM05D001677 ORTHO05D001682 6.7e-06 53.9 65 43.1
Potri.015G103000 Populus trichocarpa HOM05D001677 ORTHO05D001682 6.7e-06 53.9 58 44.8
QL10p001355 Quercus lobata HOM05D001677 ORTHO05D001682 6.7e-06 53.9 61 47.5
Rhsim10G0049500 Rhododendron simsii HOM05D001677 ORTHO05D001682 6.7e-06 53.9 67 38.8
Cc04_g09790 Coffea canephora HOM05D001677 ORTHO05D001682 8.7e-06 53.5 65 36.9
MD06G1135400 Malus domestica HOM05D001677 ORTHO05D001682 8.7e-06 53.5 61 42.6
Medtr8g090165 Medicago truncatula HOM05D001677 ORTHO05D001682 8.7e-06 53.5 59 44.1
PGR044G1715 Punica granatum HOM05D001677 ORTHO05D001682 8.7e-06 53.5 59 45.8
Hund10085 Selenicereus undatus HOM05D001677 ORTHO05D001682 8.7e-06 53.5 65 44.6
Sc22g0003590 Simmondsia chinensis HOM05D001677 ORTHO05D001682 8.7e-06 53.5 59 44.1
VMungo0331G0888 Vigna mungo HOM05D001677 ORTHO05D001682 8.7e-06 53.5 59 44.1


User provided reference genes

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