Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 1.1e-107 393.3 198 100.0
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 1.4e-73 280.0 199 67.3
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 7.6e-72 274.2 205 65.9
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 1.3e-71 273.5 201 67.7
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.1e-70 270.4 205 65.4
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 2.4e-70 269.2 202 66.3
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 5.5e-70 268.1 200 65.5
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 9.3e-70 267.3 199 67.3
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 1.2e-69 266.9 194 68.0
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 2.7e-69 265.8 203 65.5
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 3.5e-69 265.4 201 67.2
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 4.6e-69 265.0 207 64.7
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 4.6e-69 265.0 200 65.5
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 6.0e-69 264.6 202 65.8
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 6.0e-69 264.6 192 66.1
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 1.0e-68 263.8 202 65.3
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 1.3e-68 263.5 203 64.5
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.8e-68 263.1 195 67.7
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 2.3e-68 262.7 202 64.4
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 3.0e-68 262.3 197 65.0
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 3.9e-68 261.9 202 63.9
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 5.1e-68 261.5 200 65.5
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 6.7e-68 261.2 203 64.0
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 6.7e-68 261.2 195 66.7
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 6.7e-68 261.2 206 61.7
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 8.7e-68 260.8 206 64.1
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 8.7e-68 260.8 213 61.5
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.1e-67 260.4 195 64.6
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.1e-67 260.4 195 64.6
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.1e-67 260.4 195 64.6
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 1.5e-67 260.0 199 64.8
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.9e-67 259.6 195 67.7
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 2.5e-67 259.2 188 65.4
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.3e-67 258.8 205 63.4
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 4.3e-67 258.5 205 63.4
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.3e-67 258.5 205 63.4
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.3e-67 258.5 201 64.2
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.3e-67 258.5 201 64.2
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 4.3e-67 258.5 205 62.4
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 4.3e-67 258.5 200 63.5
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 5.6e-67 258.1 201 63.2
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 5.6e-67 258.1 197 65.5
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 5.6e-67 258.1 201 64.2
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 5.6e-67 258.1 205 63.4
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 7.4e-67 257.7 205 63.4
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 7.4e-67 257.7 205 63.4
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 7.4e-67 257.7 192 65.1
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 7.4e-67 257.7 201 62.7
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 7.4e-67 257.7 205 62.4
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 9.6e-67 257.3 197 65.0
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.3e-66 256.9 197 63.5
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 1.3e-66 256.9 197 65.0
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 1.6e-66 256.5 212 60.8
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 2.1e-66 256.1 206 61.2
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 2.1e-66 256.1 197 65.0
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 2.1e-66 256.1 194 63.4
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 2.8e-66 255.8 201 62.2
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 2.8e-66 255.8 205 62.9
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 3.7e-66 255.4 197 65.0
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 4.8e-66 255.0 207 63.8
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 4.8e-66 255.0 207 61.8
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 8.1e-66 254.2 207 60.9
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 1.1e-65 253.8 201 62.7
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 1.1e-65 253.8 202 61.9
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 1.4e-65 253.4 202 62.4
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 1.8e-65 253.1 207 58.9
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 2.4e-65 252.7 202 62.4
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 3.1e-65 252.3 205 60.5
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 4.0e-65 251.9 207 59.9
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 5.3e-65 251.5 209 62.7
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 5.3e-65 251.5 209 62.7
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 5.3e-65 251.5 202 61.9
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 5.3e-65 251.5 200 61.5
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 5.3e-65 251.5 207 61.8
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 6.9e-65 251.1 196 63.8
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 6.9e-65 251.1 184 65.8
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 6.9e-65 251.1 207 61.8
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 9.0e-65 250.8 198 60.6
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 9.0e-65 250.8 201 61.2
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 2.0e-64 249.6 205 61.0
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 4.5e-64 248.4 206 60.7
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 5.8e-64 248.1 207 60.9
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.0e-63 247.3 206 59.2
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 2.2e-63 246.1 199 60.8
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 4.9e-63 245.0 210 57.6
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 4.9e-63 245.0 198 61.1
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 4.9e-63 245.0 194 63.9
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 3.2e-62 242.3 196 62.8
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 9.3e-62 240.7 204 59.3
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 9.3e-62 240.7 207 60.9
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 1.2e-61 240.4 218 56.0
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 1.6e-61 240.0 192 61.5
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 2.7e-61 239.2 206 59.2
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 3.5e-61 238.8 197 61.9
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 3.5e-61 238.8 193 61.7
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 6.0e-61 238.0 201 60.2
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 1.3e-60 236.9 197 61.4
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 1.3e-60 236.9 201 61.7
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 1.3e-60 236.9 201 61.7
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 1.8e-60 236.5 201 61.7
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 1.8e-60 236.5 201 61.2
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 1.8e-60 236.5 201 61.2
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 1.8e-60 236.5 198 61.1
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 2.3e-60 236.1 198 61.1
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 3.0e-60 235.7 203 59.6
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 3.0e-60 235.7 203 59.6
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 3.0e-60 235.7 201 61.2
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 3.0e-60 235.7 203 59.6
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 3.0e-60 235.7 191 61.3
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 3.9e-60 235.3 203 59.1
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 3.9e-60 235.3 201 60.2
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 5.1e-60 235.0 203 59.1
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 2.5e-59 232.6 186 64.0
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 3.3e-59 232.3 195 59.0
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 2.1e-58 229.6 202 59.4
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 2.1e-58 229.6 185 63.2
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 8.2e-58 227.6 185 62.7
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 3.1e-57 225.7 180 61.1
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.5e-56 223.4 193 60.1
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 2.2e-55 219.5 195 58.5
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 1.1e-54 217.2 181 58.6
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 1.4e-54 216.9 174 63.2
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 2.3e-52 209.5 142 70.4
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 3.0e-52 209.1 190 57.4
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 8.7e-52 207.6 206 52.4
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 1.8e-49 199.9 211 51.7
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 5.0e-47 191.8 157 61.8
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 1.2e-45 187.2 158 59.5
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 2.1e-45 186.4 164 58.5
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 7.9e-45 184.5 115 77.4
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 1.7e-42 176.8 205 49.8
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 6.9e-41 171.4 120 65.8
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 9.4e-38 161.0 108 69.4
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 3.9e-36 155.6 191 46.1
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 8.8e-36 154.5 101 72.3
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 2.8e-34 149.4 156 53.8
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 4.5e-32 142.1 104 65.4
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 3.8e-31 139.0 117 58.1
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 5.9e-24 115.2 62 91.9
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 1.2e-13 80.9 60 63.3
Pp3c12_3400 Physcomitrium patens HOM05D000906 ORTHO05D000713 2.4e-09 66.6 164 29.3
AagrBONN_evm.TU.Sc2ySwM_117.4181 Anthoceros agrestis HOM05D025074 ORTHO05D006395 1.6e-08 63.9 164 26.2
AagrBONN_evm.TU.Sc2ySwM_117.4197 Anthoceros agrestis HOM05D025074 ORTHO05D006395 1.6e-08 63.9 164 26.2
Mapoly0062s0070 Marchantia polymorpha HOM05D005580 ORTHO05D006395 2.9e-07 59.7 163 28.2
AagrBONN_evm.TU.Sc2ySwM_368.2233 Anthoceros agrestis HOM05D025074 ORTHO05D006395 1.1e-06 57.8 167 26.9
AagrBONN_evm.TU.Sc2ySwM_228.4189 Anthoceros agrestis HOM05D025074 ORTHO05D006395 1.5e-06 57.4 137 29.2


User provided reference genes

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