Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 4.1e-279 964.1 503 100.0
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.5e-180 636.0 352 95.2
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.5e-127 460.7 242 99.6
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 3.3e-95 353.2 464 46.3
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 5.6e-95 352.4 468 44.9
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 9.9e-92 341.7 469 45.0
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 2.9e-91 340.1 469 44.8
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 3.7e-91 339.7 469 43.7
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 1.1e-90 338.2 479 44.5
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 2.4e-90 337.0 472 43.6
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 3.2e-90 336.7 476 44.3
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 3.2e-90 336.7 460 43.9
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 1.2e-89 334.7 459 43.8
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 1.2e-89 334.7 471 44.6
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 2.1e-89 334.0 475 45.7
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 6.6e-88 328.9 476 43.5
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 1.1e-87 328.2 469 43.5
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 1.6e-86 324.3 478 41.4
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 1.6e-86 324.3 477 41.5
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 2.1e-86 323.9 477 41.5
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 6.2e-86 322.4 466 42.1
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 6.2e-86 322.4 477 42.1
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 1.8e-85 320.9 470 44.0
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 5.8e-84 315.8 475 41.9
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 7.6e-84 315.5 472 43.6
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 6.4e-83 312.4 474 43.2
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 9.2e-82 308.5 465 42.8
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 9.2e-82 308.5 480 41.7
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 9.2e-82 308.5 510 38.0
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 9.2e-82 308.5 472 41.9
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 1.2e-81 308.1 465 40.6
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.2e-81 308.1 472 42.6
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 2.7e-81 307.0 465 41.5
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 4.6e-81 306.2 472 40.5
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 4.6e-81 306.2 455 41.1
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 1.1e-79 301.6 477 41.3
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 3.3e-79 300.1 456 41.0
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 4.3e-79 299.7 473 39.1
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 4.3e-79 299.7 472 40.3
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 9.6e-79 298.5 474 40.9
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 9.6e-79 298.5 478 41.6
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 1.6e-78 297.7 467 40.9
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 1.6e-78 297.7 489 39.1
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 1.6e-78 297.7 469 41.6
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 2.1e-78 297.4 493 41.6
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 3.6e-78 296.6 473 39.1
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 3.6e-78 296.6 472 40.9
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 3.6e-78 296.6 483 42.4
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 3.6e-78 296.6 470 41.3
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 4.7e-78 296.2 447 43.8
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 4.7e-78 296.2 496 41.9
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 1.1e-77 295.0 465 39.4
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 1.1e-77 295.0 443 41.5
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 1.8e-77 294.3 469 40.9
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 2.4e-77 293.9 469 40.1
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 2.4e-77 293.9 474 39.9
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 3.1e-77 293.5 448 41.1
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 5.2e-77 292.7 419 43.7
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 9.0e-77 292.0 433 42.5
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 9.0e-77 292.0 466 41.2
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 1.5e-76 291.2 517 38.1
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 1.5e-76 291.2 468 41.7
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 1.5e-76 291.2 466 41.4
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 2.6e-76 290.4 487 40.9
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 4.4e-76 289.7 471 39.1
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 2.2e-75 287.3 459 40.5
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 2.9e-75 287.0 426 43.4
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 3.8e-75 286.6 479 40.3
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 3.8e-75 286.6 479 40.5
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 1.1e-74 285.0 507 37.7
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 2.4e-74 283.9 474 40.9
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 7.1e-74 282.3 473 38.9
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 9.3e-74 282.0 464 42.0
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 4.6e-73 279.6 470 40.2
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 6.0e-73 279.3 471 40.6
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 1.0e-72 278.5 468 39.5
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 1.5e-71 274.6 462 39.4
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 7.3e-71 272.3 435 42.8
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 7.3e-71 272.3 460 39.8
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 6.2e-70 269.2 472 36.0
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 2.4e-69 267.3 474 38.6
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 9.9e-68 261.9 427 41.0
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 1.3e-67 261.5 464 38.1
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 1.9e-66 257.7 465 38.3
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 3.2e-66 256.9 438 39.0
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 7.1e-66 255.8 464 37.7
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 7.1e-66 255.8 464 37.7
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 2.7e-65 253.8 464 37.5
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 2.7e-65 253.8 384 43.0
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 1.2e-60 238.4 458 36.0
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 9.6e-55 218.8 113 99.1
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 7.6e-52 209.1 434 35.5
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 1.3e-51 208.4 478 35.4
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 1.4e-50 204.9 321 42.4
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 9.7e-39 165.6 226 43.8
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 8.5e-35 152.5 453 30.9
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 7.2e-34 149.4 251 39.4
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 1.2e-33 148.7 391 33.2
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 8.8e-32 142.5 222 41.4
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 8.2e-30 136.0 183 46.4
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 3.7e-22 110.5 380 28.2
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 2.6e-20 104.4 215 36.7
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 2.7e-17 94.4 136 37.5
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 3.6e-17 94.0 263 31.9
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 6.1e-17 93.2 222 35.6
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 2.0e-15 88.2 514 26.8
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 1.7e-14 85.1 78 51.3
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 4.5e-12 77.0 104 46.2
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 5.9e-12 76.6 184 33.7
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 2.2e-11 74.7 144 35.4
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 9.4e-10 69.3 263 27.8
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 3.6e-09 67.4 262 27.1
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 1.4e-08 65.5 85 45.9
SHI21618 Sapria himalayana HOM05D004277 ORTHO05D005148 1.8e-08 65.1 89 46.1
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 5.2e-08 63.5 128 41.4


User provided reference genes

Program Settings