Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_33722 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 9.1e-69 263.5 134 100.0
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.4e-13 80.1 114 43.9
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 1.4e-13 80.1 89 50.6
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 2.4e-13 79.3 94 48.9
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 4.1e-13 78.6 85 52.9
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 7.1e-13 77.8 96 46.9
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 3.5e-12 75.5 96 44.8
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 7.8e-12 74.3 106 44.3
SEGI_17164 Sequoiadendron giganteum HOM05D000154 ORTHO05D000092 1.3e-11 73.6 82 51.2
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 3.9e-11 72.0 83 50.6
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 3.9e-11 72.0 83 50.6
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 6.6e-11 71.2 96 46.9
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 1.1e-10 70.5 105 44.8
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 1.1e-10 70.5 83 50.6
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 1.5e-10 70.1 83 49.4
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 2.5e-10 69.3 83 49.4
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 2.5e-10 69.3 83 49.4
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 3.3e-10 68.9 105 43.8
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 5.6e-10 68.2 105 42.9
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 7.3e-10 67.8 84 50.0
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 9.6e-10 67.4 83 49.4
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 9.6e-10 67.4 105 41.9
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 9.6e-10 67.4 83 47.0
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 1.6e-09 66.6 82 46.3
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 2.1e-09 66.2 83 48.2
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 2.1e-09 66.2 83 48.2
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 2.1e-09 66.2 83 48.2
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 2.1e-09 66.2 83 49.4
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 2.8e-09 65.9 105 42.9
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 2.8e-09 65.9 105 42.9
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 2.8e-09 65.9 83 49.4
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 2.8e-09 65.9 83 45.8
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 2.8e-09 65.9 83 48.2
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 3.6e-09 65.5 105 42.9
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 3.6e-09 65.5 83 47.0
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 4.7e-09 65.1 86 48.8
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 4.7e-09 65.1 83 49.4
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 4.7e-09 65.1 83 49.4
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 4.7e-09 65.1 83 48.2
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 6.2e-09 64.7 105 41.9
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 8.1e-09 64.3 83 49.4
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 8.1e-09 64.3 83 49.4
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 8.1e-09 64.3 83 49.4
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 8.1e-09 64.3 105 40.0
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 1.1e-08 63.9 83 48.2
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 1.1e-08 63.9 105 41.9
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 1.1e-08 63.9 83 48.2
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 1.1e-08 63.9 83 48.2
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 1.1e-08 63.9 98 45.9
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 1.1e-08 63.9 83 47.0
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 1.1e-08 63.9 83 45.8
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 1.4e-08 63.5 87 50.6
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 1.4e-08 63.5 83 48.2
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 1.4e-08 63.5 83 49.4
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 1.8e-08 63.2 83 48.2
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 1.8e-08 63.2 83 48.2
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 2.4e-08 62.8 83 47.0
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 2.4e-08 62.8 105 41.0
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 2.4e-08 62.8 82 45.1
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 2.4e-08 62.8 83 47.0
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 2.4e-08 62.8 85 47.1
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 4.0e-08 62.0 83 44.6
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 4.0e-08 62.0 83 47.0
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 4.0e-08 62.0 83 48.2
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 4.0e-08 62.0 83 45.8
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 4.0e-08 62.0 83 47.0
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 5.2e-08 61.6 105 41.0
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 5.2e-08 61.6 105 41.0
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 5.2e-08 61.6 105 41.0
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 5.2e-08 61.6 105 41.0
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 5.2e-08 61.6 83 47.0
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 6.8e-08 61.2 83 45.8
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 6.8e-08 61.2 83 45.8
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 8.9e-08 60.8 83 48.2
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 8.9e-08 60.8 83 48.2
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 8.9e-08 60.8 83 45.8
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 8.9e-08 60.8 83 47.0
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 8.9e-08 60.8 105 41.0
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 8.9e-08 60.8 83 47.0
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 8.9e-08 60.8 83 47.0
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 1.2e-07 60.5 105 41.0
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 1.2e-07 60.5 105 41.0
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 1.2e-07 60.5 83 47.0
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 1.5e-07 60.1 82 45.1
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 1.5e-07 60.1 82 45.1
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 1.5e-07 60.1 83 45.8
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 1.5e-07 60.1 83 47.0
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 1.5e-07 60.1 83 47.0
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 1.5e-07 60.1 83 47.0
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 1.5e-07 60.1 83 47.0
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 1.5e-07 60.1 83 45.8
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 1.5e-07 60.1 83 45.8
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 2.0e-07 59.7 83 45.8
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 2.0e-07 59.7 83 45.8
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 2.0e-07 59.7 82 47.6
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 2.0e-07 59.7 83 47.0
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 2.6e-07 59.3 83 43.4
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 2.6e-07 59.3 100 40.0
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 2.6e-07 59.3 102 42.2
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 2.6e-07 59.3 102 42.2
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 4.4e-07 58.5 83 45.8
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 4.4e-07 58.5 105 39.0
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 9.9e-07 57.4 83 44.6
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 1.3e-06 57.0 83 48.2
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 1.3e-06 57.0 83 48.2
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 1.7e-06 56.6 105 39.0
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 3.8e-06 55.5 83 44.6
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 4.9e-06 55.1 90 42.2
ATR0598G245 Amborella trichopoda HOM05D004564 ORTHO05D006106 8.4e-06 54.3 50 62.0


User provided reference genes

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