Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_33655 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 9.4e-118 426.8 203 100.0
SEGI_37827 Sequoiadendron giganteum HOM05D016968 ORTHO05D000014 4.9e-58 228.4 146 77.4
SEGI_02721 Sequoiadendron giganteum HOM05D016968 ORTHO05D000014 6.0e-56 221.5 146 74.7
SEGI_05862 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 3.0e-55 219.2 202 61.4
SEGI_41191 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 2.6e-51 206.1 147 68.0
SEGI_39986 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 2.2e-50 203.0 146 68.5
SEGI_07866 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 1.5e-43 180.3 103 79.6
SEGI_24579 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 1.1e-36 157.5 119 69.7
SEGI_32510 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 1.1e-36 157.5 119 69.7
SEGI_28960 Sequoiadendron giganteum HOM05D000228 ORTHO05D001545 1.9e-33 146.7 104 75.0
SEGI_03844 Sequoiadendron giganteum HOM05D016968 ORTHO05D000014 7.2e-17 91.7 78 67.9
SEGI_30643 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 7.2e-17 91.7 56 69.6
CiPaw.01G084200 Carya illinoinensis HOM05D000023 ORTHO05D000014 9.7e-14 81.3 144 35.4
CiPaw.13G061100 Carya illinoinensis HOM05D000023 ORTHO05D000014 3.1e-12 76.3 144 33.3
CiPaw.15G074600 Carya illinoinensis HOM05D000023 ORTHO05D000014 3.1e-12 76.3 144 33.3
arahy.Tifrunner.gnm1.ann1.EX98MN Arachis hypogaea HOM05D000023 ORTHO05D000014 4.1e-12 75.9 188 31.9
arahy.Tifrunner.gnm1.ann1.63L4KW Arachis hypogaea HOM05D000023 ORTHO05D000014 9.1e-12 74.7 174 32.8
arahy.Tifrunner.gnm1.ann1.XP6W6B Arachis hypogaea HOM05D000023 ORTHO05D000014 1.2e-11 74.3 174 33.3
arahy.Tifrunner.gnm1.ann1.AV2QAA Arachis hypogaea HOM05D000023 ORTHO05D000014 1.5e-11 73.9 174 32.8
CiPaw.05G170000 Carya illinoinensis HOM05D000023 ORTHO05D000014 2.0e-11 73.6 144 33.3
arahy.Tifrunner.gnm1.ann1.92GJI2 Arachis hypogaea HOM05D000023 ORTHO05D001430 2.6e-11 73.2 185 31.4
arahy.Tifrunner.gnm1.ann1.5Q0VV8 Arachis hypogaea HOM05D000023 ORTHO05D000014 4.5e-11 72.4 174 32.2
PGR042G3512 Punica granatum HOM05D000023 ORTHO05D000014 1.3e-10 70.9 144 35.4
Lalb_Chr01g0015181 Lupinus albus HOM05D000023 ORTHO05D009998 2.2e-10 70.1 144 38.2
PGR044G0603 Punica granatum HOM05D000023 ORTHO05D000014 2.2e-10 70.1 144 34.7
arahy.Tifrunner.gnm1.ann1.5N0RNK Arachis hypogaea HOM05D000023 ORTHO05D009998 3.8e-10 69.3 174 33.3
arahy.Tifrunner.gnm1.ann1.W7WLA6 Arachis hypogaea HOM05D000023 ORTHO05D000014 5.0e-10 68.9 174 31.6
arahy.Tifrunner.gnm1.ann1.ELPQ8U Arachis hypogaea HOM05D000023 ORTHO05D000014 6.5e-10 68.6 174 32.2
arahy.Tifrunner.gnm1.ann1.BCQY4K Arachis hypogaea HOM05D000023 ORTHO05D000014 2.5e-09 66.6 174 32.2
arahy.Tifrunner.gnm1.ann1.CB6PK8 Arachis hypogaea HOM05D000023 ORTHO05D000014 3.2e-09 66.2 143 32.9
PGR031G2372 Punica granatum HOM05D000023 ORTHO05D000014 4.2e-09 65.9 144 33.3
arahy.Tifrunner.gnm1.ann1.SSF1RD Arachis hypogaea HOM05D000023 ORTHO05D000014 7.2e-09 65.1 143 32.9
PGR031G0273 Punica granatum HOM05D000023 ORTHO05D000014 7.2e-09 65.1 145 33.1
SEGI_19200 Sequoiadendron giganteum HOM05D015746 ORTHO05D002750 7.2e-09 65.1 150 32.0
arahy.Tifrunner.gnm1.ann1.CXMR2S Arachis hypogaea HOM05D000023 ORTHO05D000014 1.2e-08 64.3 150 32.0
arahy.Tifrunner.gnm1.ann1.I0WBDK Arachis hypogaea HOM05D000023 ORTHO05D000014 1.6e-08 63.9 143 32.9
QL12p014306 Quercus lobata HOM05D000023 ORTHO05D000014 2.1e-08 63.5 76 36.8
arahy.Tifrunner.gnm1.ann1.8AA0CK Arachis hypogaea HOM05D000023 ORTHO05D000014 2.7e-08 63.2 178 29.8
MBI04_g35666_MAGBIO Magnolia biondii HOM05D000023 ORTHO05D000014 3.6e-08 62.8 160 27.5
PGR042G2456 Punica granatum HOM05D000023 ORTHO05D000014 3.6e-08 62.8 145 32.4
PGR142G4300 Punica granatum HOM05D000023 ORTHO05D000014 3.6e-08 62.8 145 32.4
GSVIVG01007419001 Vitis vinifera HOM05D000023 ORTHO05D000014 3.6e-08 62.8 79 35.4
arahy.Tifrunner.gnm1.ann1.8B93CY Arachis hypogaea HOM05D000023 ORTHO05D000014 4.7e-08 62.4 179 29.6
SEGI_25087 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 4.7e-08 62.4 51 70.6
TPR.G25982 Trifolium pratense HOM05D000023 ORTHO05D000014 4.7e-08 62.4 143 32.9
arahy.Tifrunner.gnm1.ann1.YQ6GWT Arachis hypogaea HOM05D000023 ORTHO05D000014 7.9e-08 61.6 186 29.6
Hma1.2p1_1290F.1_g273420 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 7.9e-08 61.6 113 29.2
Psat5g123400 Pisum sativum HOM05D000023 ORTHO05D000014 7.9e-08 61.6 92 38.0
Prupe.1G105600 Prunus persica HOM05D000023 ORTHO05D000014 7.9e-08 61.6 106 39.6
SEGI_36517 Sequoiadendron giganteum HOM05D016968 ORTHO05D000014 7.9e-08 61.6 172 26.2
FvH4_5g00491 Fragaria vesca HOM05D000023 ORTHO05D000014 1.0e-07 61.2 113 29.2
TPR.G15840 Trifolium pratense HOM05D000023 ORTHO05D000014 1.0e-07 61.2 92 38.0
arahy.Tifrunner.gnm1.ann1.5D831P Arachis hypogaea HOM05D000023 ORTHO05D000014 1.4e-07 60.8 148 32.4
CDE04G3760 Ceratophyllum demersum HOM05D000023 ORTHO05D000014 1.4e-07 60.8 100 34.0
Ca_08176_v3 Cicer arietinum L. HOM05D000023 ORTHO05D000014 1.4e-07 60.8 92 38.0
Hma1.2p1_0754F.1_g213020 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 1.4e-07 60.8 144 34.0
PGR031G2722 Punica granatum HOM05D000023 ORTHO05D000014 1.4e-07 60.8 112 28.6
QL10p062522 Quercus lobata HOM05D000023 ORTHO05D000014 1.4e-07 60.8 89 38.2
SEGI_07948 Sequoiadendron giganteum HOM05D016968 ORTHO05D000014 1.4e-07 60.8 77 35.1
Aqoxy7G00206 Aquilegia oxysepala HOM05D000023 ORTHO05D000014 1.8e-07 60.5 111 33.3
arahy.Tifrunner.gnm1.ann1.7GC0T1 Arachis hypogaea HOM05D000023 ORTHO05D000014 1.8e-07 60.5 143 31.5
MELO3C032274.2 Cucumis melo HOM05D000023 ORTHO05D000014 1.8e-07 60.5 142 27.5
CsaV3_3G003120 Cucumis sativus L. HOM05D000023 ORTHO05D000014 1.8e-07 60.5 142 27.5
CsaV3_5G000770 Cucumis sativus L. HOM05D000023 ORTHO05D000014 1.8e-07 60.5 93 34.4
RcHm_v2.0_Chr7g0202011 Rosa chinensis HOM05D000023 ORTHO05D000014 1.8e-07 60.5 74 35.1
Atru.chr9.1405 Acer truncatum HOM05D000023 ORTHO05D000014 2.3e-07 60.1 113 30.1
arahy.Tifrunner.gnm1.ann1.3R5KAN Arachis hypogaea HOM05D000023 ORTHO05D009998 2.3e-07 60.1 143 32.9
arahy.Tifrunner.gnm1.ann1.3WQ4BR Arachis hypogaea HOM05D000023 ORTHO05D000014 2.3e-07 60.1 143 32.9
SEGI_25620 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 2.3e-07 60.1 156 34.0
arahy.Tifrunner.gnm1.ann1.HNDE73 Arachis hypogaea HOM05D000023 ORTHO05D000014 3.0e-07 59.7 91 36.3
Cpa.g.sc29.102 Carica papaya HOM05D000023 ORTHO05D000014 3.0e-07 59.7 135 28.1
QL10p062902 Quercus lobata HOM05D000023 ORTHO05D000014 3.0e-07 59.7 88 37.5
Aqoxy7G00677 Aquilegia oxysepala HOM05D000023 ORTHO05D000014 3.9e-07 59.3 141 27.0
Solyc08g007470.2 Solanum lycopersicum HOM05D000023 ORTHO05D000014 3.9e-07 59.3 91 34.1
PGSC0003DMG401012482 Solanum tuberosum HOM05D000023 ORTHO05D000014 3.9e-07 59.3 91 34.1
Rhsim03G0000500 Rhododendron simsii HOM05D000023 ORTHO05D000014 5.1e-07 58.9 79 34.2
HPP92_002831 Vanilla planifolia HOM05D000023 ORTHO05D000014 5.1e-07 58.9 79 39.2
arahy.Tifrunner.gnm1.ann1.27FSNF Arachis hypogaea HOM05D000023 ORTHO05D000014 6.7e-07 58.5 92 34.8
arahy.Tifrunner.gnm1.ann1.XAPW6D Arachis hypogaea HOM05D000023 ORTHO05D009998 6.7e-07 58.5 143 32.2
Lj1g0001030 Lotus japonicus HOM05D000023 ORTHO05D000014 6.7e-07 58.5 143 33.6
Lj3g0020218 Lotus japonicus HOM05D000023 ORTHO05D000014 6.7e-07 58.5 143 33.6
Lj4g0011921 Lotus japonicus HOM05D000023 ORTHO05D000014 6.7e-07 58.5 143 33.6
Lj4g0024756 Lotus japonicus HOM05D000023 ORTHO05D000014 6.7e-07 58.5 88 37.5
PSO170G4534 Papaver somniferum HOM05D000023 ORTHO05D000014 6.7e-07 58.5 73 41.1
PSO357G0624 Papaver somniferum HOM05D000023 ORTHO05D000014 6.7e-07 58.5 73 41.1
PSO782G3141 Papaver somniferum HOM05D000023 ORTHO05D000014 6.7e-07 58.5 134 28.4
Sopen08g003430 Solanum pennellii HOM05D000023 ORTHO05D000014 6.7e-07 58.5 91 34.1
Cc08_g13130 Coffea canephora HOM05D000023 ORTHO05D000014 8.8e-07 58.2 142 23.9
MBI18_g10388_MAGBIO Magnolia biondii HOM05D000023 ORTHO05D000014 8.8e-07 58.2 81 39.5
Nn1g01787 Nelumbo nucifera HOM05D000023 ORTHO05D000014 8.8e-07 58.2 79 38.0
Nitab4.5_0001816g0230 Nicotiana tabacum HOM05D000023 ORTHO05D000014 8.8e-07 58.2 74 35.1
TWI18G1136 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 8.8e-07 58.2 149 29.5
arahy.Tifrunner.gnm1.ann1.FVUD3C Arachis hypogaea HOM05D000023 ORTHO05D000014 1.1e-06 57.8 143 32.2
arahy.Tifrunner.gnm1.ann1.H1YCBP Arachis hypogaea HOM05D000023 ORTHO05D000014 1.1e-06 57.8 143 31.5
Nitab4.5_0001707g0100 Nicotiana tabacum HOM05D000023 ORTHO05D013611 1.1e-06 57.8 74 33.8
TWI60G1408 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 1.1e-06 57.8 150 31.3
TWI79G0405 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 1.1e-06 57.8 150 31.3
arahy.Tifrunner.gnm1.ann1.12XZMQ Arachis hypogaea HOM05D000023 ORTHO05D000014 1.5e-06 57.4 124 33.9
arahy.Tifrunner.gnm1.ann1.BR63RY Arachis hypogaea HOM05D000023 ORTHO05D000014 1.5e-06 57.4 124 33.9
CSS0035116 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 1.5e-06 57.4 117 29.9
Lalb_Chr18g0053161 Lupinus albus HOM05D000023 ORTHO05D000014 1.5e-06 57.4 116 34.5
Manes.01G233700 Manihot esculenta HOM05D000023 ORTHO05D000014 1.5e-06 57.4 64 46.9
Nn4g26353 Nelumbo nucifera HOM05D000023 ORTHO05D000014 1.5e-06 57.4 74 35.1
Nitab4.5_0001707g0130 Nicotiana tabacum HOM05D000023 ORTHO05D000014 1.5e-06 57.4 74 33.8
HPP92_007622 Vanilla planifolia HOM05D000023 ORTHO05D000014 1.5e-06 57.4 74 33.8
arahy.Tifrunner.gnm1.ann1.B9GP5J Arachis hypogaea HOM05D000023 ORTHO05D000014 2.0e-06 57.0 124 33.9
arahy.Tifrunner.gnm1.ann1.ZL8DQS Arachis hypogaea HOM05D000023 ORTHO05D000014 2.0e-06 57.0 140 31.4
Os03g0822900 Oryza sativa ssp. japonica HOM05D000023 ORTHO05D000014 2.0e-06 57.0 75 38.7
PSO135G0262 Papaver somniferum HOM05D000023 ORTHO05D000014 2.0e-06 57.0 87 34.5
PSO210G6885 Papaver somniferum HOM05D000023 ORTHO05D002750 2.0e-06 57.0 90 36.7
Sabra01G0091500 Salix brachista HOM05D000023 ORTHO05D000014 2.0e-06 57.0 76 31.6
TPR.G26303 Trifolium pratense HOM05D000023 ORTHO05D000014 2.0e-06 57.0 138 28.3
arahy.Tifrunner.gnm1.ann1.6B5FLC Arachis hypogaea HOM05D000023 ORTHO05D000014 2.6e-06 56.6 124 33.9
arahy.Tifrunner.gnm1.ann1.C29R3S Arachis hypogaea HOM05D000023 ORTHO05D000014 2.6e-06 56.6 124 33.9
arahy.Tifrunner.gnm1.ann1.LNUL8Y Arachis hypogaea HOM05D000023 ORTHO05D000014 2.6e-06 56.6 124 33.9
Duzib205G1169 Durio zibethinus HOM05D000023 ORTHO05D000014 2.6e-06 56.6 104 32.7
Lj4g0011188 Lotus japonicus HOM05D000023 ORTHO05D000014 2.6e-06 56.6 146 34.9
PSO384G0268 Papaver somniferum HOM05D000023 ORTHO05D000014 2.6e-06 56.6 95 33.7
QL10p062588 Quercus lobata HOM05D000023 ORTHO05D000014 2.6e-06 56.6 82 35.4
Atru.chr5.888 Acer truncatum HOM05D000023 ORTHO05D000014 3.3e-06 56.2 64 43.8
FvH4_6g39601 Fragaria vesca HOM05D000023 ORTHO05D000014 3.3e-06 56.2 112 34.8
Glyma.08G283900 Glycine max HOM05D000023 ORTHO05D000014 3.3e-06 56.2 149 36.2
Potri.014G114100 Populus trichocarpa HOM05D000023 ORTHO05D000014 3.3e-06 56.2 64 45.3
QL08p060650 Quercus lobata HOM05D000023 ORTHO05D000014 3.3e-06 56.2 92 33.7
QL10p065955 Quercus lobata HOM05D000023 ORTHO05D000014 3.3e-06 56.2 89 36.0
Thecc.01G323700 Theobroma cacao HOM05D000023 ORTHO05D000014 3.3e-06 56.2 64 45.3
arahy.Tifrunner.gnm1.ann1.6ZK15V Arachis hypogaea HOM05D000023 ORTHO05D009998 4.4e-06 55.8 143 31.5
CANSAT21G0240 Cannabis sativa HOM05D000023 ORTHO05D000014 4.4e-06 55.8 56 35.7
COL.COLO4_23146 Corchorus olitorius HOM05D000023 ORTHO05D000014 4.4e-06 55.8 64 45.3
Lalb_Chr15g0084631 Lupinus albus HOM05D000023 ORTHO05D000014 4.4e-06 55.8 92 37.0
MBI07_g11399_MAGBIO Magnolia biondii HOM05D000023 ORTHO05D000014 4.4e-06 55.8 88 34.1
QL03p022208 Quercus lobata HOM05D000023 ORTHO05D000014 4.4e-06 55.8 103 34.0
Sed0009568 Sechium edule HOM05D000023 ORTHO05D000014 4.4e-06 55.8 142 25.4
TWI14G1170 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 4.4e-06 55.8 97 32.0
arahy.Tifrunner.gnm1.ann1.3J1VJF Arachis hypogaea HOM05D000023 ORTHO05D009998 5.7e-06 55.5 124 36.3
BraA01t03749Z Brassica rapa HOM05D000023 ORTHO05D000014 5.7e-06 55.5 70 41.4
PGR042G0167 Punica granatum HOM05D000023 ORTHO05D000014 5.7e-06 55.5 64 43.8
QL10p065989 Quercus lobata HOM05D000009 ORTHO05D000008 5.7e-06 55.5 83 37.3
arahy.Tifrunner.gnm1.ann1.0H0KFG Arachis hypogaea HOM05D000023 ORTHO05D000014 7.4e-06 55.1 124 33.1
arahy.Tifrunner.gnm1.ann1.3ZEH7Z Arachis hypogaea HOM05D000023 ORTHO05D000014 7.4e-06 55.1 124 32.3
arahy.Tifrunner.gnm1.ann1.P8GXKD Arachis hypogaea HOM05D000023 ORTHO05D009998 7.4e-06 55.1 105 37.1
A01p36900 Brassica napus HOM05D000023 ORTHO05D000014 7.4e-06 55.1 70 41.4
Ciclev10024195m.g Citrus clementina HOM05D000023 ORTHO05D000014 7.4e-06 55.1 64 43.8
Duzib084G0577 Durio zibethinus HOM05D000023 ORTHO05D000014 7.4e-06 55.1 112 26.8
Gohir.A12G120650 Gossypium hirsutum HOM05D000023 ORTHO05D000014 7.4e-06 55.1 64 43.8
Gohir.D12G124401 Gossypium hirsutum HOM05D000023 ORTHO05D000014 7.4e-06 55.1 64 43.8
Gorai.008G135400 Gossypium raimondii HOM05D000023 ORTHO05D000014 7.4e-06 55.1 64 43.8
Sabra02G0166900 Salix brachista HOM05D000023 ORTHO05D000014 7.4e-06 55.1 87 42.5
Hund13788 Selenicereus undatus HOM05D000023 ORTHO05D000014 7.4e-06 55.1 121 32.2
GSVIVG01028726001 Vitis vinifera HOM05D000023 ORTHO05D000014 7.4e-06 55.1 92 32.6
arahy.Tifrunner.gnm1.ann1.SIL0WH Arachis hypogaea HOM05D000023 ORTHO05D000014 9.7e-06 54.7 114 32.5
COL.COLO4_34127 Corchorus olitorius HOM05D048154 ORTHO05D002750 9.7e-06 54.7 80 38.8
Eucgr.B02527 Eucalyptus grandis HOM05D000023 ORTHO05D000014 9.7e-06 54.7 64 43.8
FvH4_4g21491 Fragaria vesca HOM05D000023 ORTHO05D000014 9.7e-06 54.7 91 36.3
Peaxi162Scf00904g00461 Petunia axillaris HOM05D000023 ORTHO05D000014 9.7e-06 54.7 73 38.4
QL10p060079 Quercus lobata HOM05D000023 ORTHO05D000014 9.7e-06 54.7 103 33.0


User provided reference genes

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