Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 0.0e+00 1135.6 583 100.0
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 1.5e-91 341.3 590 39.8
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 2.5e-91 340.5 584 39.7
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 2.4e-89 334.0 620 38.9
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 1.6e-85 321.2 593 37.9
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 1.8e-84 317.8 607 37.2
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 1.5e-83 314.7 577 38.3
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 5.7e-83 312.8 588 37.1
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 9.7e-83 312.0 590 36.4
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 1.7e-82 311.2 603 38.5
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 2.2e-82 310.8 628 35.8
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 2.4e-81 307.4 603 36.3
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 3.1e-81 307.0 590 38.1
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 4.1e-81 306.6 616 36.2
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 9.1e-81 305.4 604 36.6
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 2.6e-80 303.9 585 35.7
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 5.9e-80 302.8 597 36.7
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 7.7e-80 302.4 592 36.8
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 1.3e-79 301.6 615 38.4
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 1.6e-77 294.7 581 35.5
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 4.7e-77 293.1 588 37.1
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 7.9e-77 292.4 627 35.7
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 1.4e-76 291.6 595 36.6
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 2.3e-76 290.8 636 33.6
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 3.0e-76 290.4 623 35.5
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 3.9e-76 290.0 593 36.3
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 1.1e-75 288.5 602 35.9
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 2.0e-75 287.7 593 35.2
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 4.4e-75 286.6 561 36.5
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 8.2e-74 282.3 590 36.4
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 8.2e-74 282.3 595 35.0
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 1.1e-73 282.0 598 34.9
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 1.1e-73 282.0 621 34.0
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 1.4e-73 281.6 587 34.8
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 1.4e-73 281.6 559 36.5
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 1.2e-72 278.5 591 35.0
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 1.2e-72 278.5 578 35.8
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 1.2e-72 278.5 611 36.8
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 1.6e-72 278.1 591 35.0
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 4.5e-72 276.6 613 33.6
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 5.9e-72 276.2 623 35.3
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.3e-71 275.0 595 36.3
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 1.3e-71 275.0 578 35.6
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 2.9e-71 273.9 558 35.7
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 1.5e-70 271.6 605 34.2
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 1.5e-70 271.6 564 35.1
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 2.5e-70 270.8 291 50.5
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 2.5e-70 270.8 599 33.7
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 5.5e-70 269.6 605 34.2
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 7.2e-70 269.2 583 36.5
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 9.4e-70 268.9 579 35.4
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 1.2e-69 268.5 575 33.0
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 1.6e-69 268.1 604 34.1
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 2.1e-69 267.7 604 33.4
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 1.0e-68 265.4 580 33.4
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 1.0e-68 265.4 567 34.6
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 1.8e-68 264.6 592 35.0
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 5.2e-68 263.1 616 34.9
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 5.2e-68 263.1 616 34.9
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 6.7e-68 262.7 583 35.0
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 8.8e-68 262.3 576 33.3
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 8.8e-68 262.3 579 34.2
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 8.8e-68 262.3 616 34.9
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 2.6e-67 260.8 583 33.4
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 4.4e-67 260.0 580 32.8
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 1.3e-66 258.5 584 32.9
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 2.2e-66 257.7 585 34.7
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 2.2e-66 257.7 541 36.4
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 3.7e-66 256.9 584 34.2
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 3.7e-66 256.9 577 34.8
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 8.2e-66 255.8 585 35.2
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 1.1e-65 255.4 714 32.1
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 1.8e-65 254.6 608 32.9
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 3.1e-65 253.8 583 35.2
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.1e-65 253.4 614 33.7
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 5.3e-65 253.1 580 33.6
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 5.3e-65 253.1 576 32.5
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 2.0e-64 251.1 581 33.9
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 2.0e-64 251.1 581 33.9
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 2.0e-64 251.1 581 33.9
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 7.7e-64 249.2 575 35.1
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 1.0e-63 248.8 617 32.7
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 2.2e-63 247.7 635 32.6
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 2.9e-63 247.3 579 33.9
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 1.1e-62 245.4 283 49.5
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 2.5e-62 244.2 294 46.6
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 3.6e-61 240.4 272 48.9
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 1.4e-60 238.4 613 31.2
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 1.8e-60 238.0 357 42.6
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 2.3e-60 237.7 600 33.5
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 1.5e-59 235.0 586 31.9
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 5.7e-59 233.0 649 32.7
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.7e-58 231.5 290 47.2
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 1.1e-57 228.8 586 30.2
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 4.1e-57 226.9 276 46.4
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 9.1e-57 225.7 276 46.4
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 9.1e-57 225.7 325 44.9
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 4.5e-56 223.4 399 37.8
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 2.5e-54 217.6 611 31.9
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 2.8e-53 214.2 578 32.0
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 6.1e-53 213.0 498 35.3
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.3e-52 211.1 620 31.3
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 4.0e-52 210.3 346 39.6
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 4.0e-52 210.3 561 31.4
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 8.8e-52 209.1 290 42.8
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 2.0e-48 198.0 444 34.7
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 2.0e-48 198.0 256 44.1
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 5.0e-47 193.4 346 38.4
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 6.6e-47 193.0 287 40.1
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 1.5e-46 191.8 287 40.8
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 3.3e-46 190.7 226 48.2
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 9.5e-46 189.1 573 29.0
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 8.9e-44 182.6 497 33.6
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 1.3e-42 178.7 601 30.8
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 1.7e-42 178.3 263 42.6
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 2.4e-41 174.5 265 40.0
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 7.0e-41 172.9 265 39.6
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 9.2e-41 172.6 616 31.2
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.7e-40 171.0 265 39.6
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.5e-38 164.5 265 39.2
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 2.1e-37 161.4 459 31.6
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 8.0e-37 159.5 434 31.6
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.9e-33 148.3 494 30.8
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 3.2e-33 147.5 311 34.1
CBR_g45680 Chara braunii HOM05D004687 ORTHO05D006002 1.2e-32 145.6 282 33.7
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 8.1e-29 132.9 370 31.1
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 1.3e-23 115.5 129 51.9
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.0e-23 114.4 432 29.6
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 3.0e-23 114.4 75 64.0
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 5.1e-23 113.6 308 31.5
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 1.5e-22 112.1 148 49.3
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 2.1e-21 108.2 119 46.2
Mapoly0091s0017 Marchantia polymorpha HOM05D004687 ORTHO05D006002 4.7e-21 107.1 289 28.0
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.1e-20 105.9 275 30.5
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 1.2e-19 102.4 174 36.8
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 1.5e-19 102.1 76 56.6
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 4.1e-17 94.0 329 28.6
COL.COLO4_21921 Corchorus olitorius HOM05D004687 ORTHO05D006002 4.6e-16 90.5 102 41.2
PSO541G1518 Papaver somniferum HOM05D004687 ORTHO05D006002 5.6e-14 83.6 160 32.5
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 5.2e-12 77.0 325 26.8
vmacro13233 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 8.4e-10 69.7 105 40.0
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 7.1e-09 66.6 96 43.8
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 4.6e-08 63.9 146 36.3
Actinidia20138 Actinidia chinensis HOM05D004687 ORTHO05D006002 1.3e-07 62.4 88 42.0
Lalb_Chr17g0339031 Lupinus albus HOM05D004687 ORTHO05D006002 1.3e-07 62.4 102 36.3


User provided reference genes

Program Settings