Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_33557 Sequoiadendron giganteum HOM05D007860 ORTHO05D009950 1.1e-31 139.4 72 100.0
Aqoxy4G02946 Aquilegia oxysepala HOM05D007860 ORTHO05D009950 1.1e-12 76.3 58 67.2
Nn4g22694 Nelumbo nucifera HOM05D007860 ORTHO05D009950 5.5e-12 73.9 55 63.6
vmacro04194 Vaccinium macrocarpon HOM05D007860 ORTHO05D009950 2.1e-11 72.0 49 69.4
THA.LOC104817766 Tarenaya hassleriana HOM05D007860 ORTHO05D009950 6.1e-11 70.5 58 62.1
Lj1g0016082 Lotus japonicus HOM05D007860 ORTHO05D009950 1.0e-10 69.7 58 63.8
Medtr7g026210 Medicago truncatula HOM05D007860 ORTHO05D009950 1.0e-10 69.7 61 62.3
Thecc.10G043200 Theobroma cacao HOM05D007860 ORTHO05D009950 1.0e-10 69.7 62 59.7
Glyma.02G092000 Glycine max HOM05D007860 ORTHO05D009950 1.4e-10 69.3 61 60.7
Lsat_1_v5_gn_8_15760 Lactuca sativa HOM05D007860 ORTHO05D009950 1.8e-10 68.9 47 68.1
MBI05_g22876_MAGBIO Magnolia biondii HOM05D007860 ORTHO05D009950 1.8e-10 68.9 55 61.8
TWI63G0334 Tripterygium wilfordii HOM05D007860 ORTHO05D009950 1.8e-10 68.9 48 64.6
Oeu017367.1 Olea europaea HOM05D007860 ORTHO05D009950 2.3e-10 68.6 45 71.1
HPP92_012590 Vanilla planifolia HOM05D007860 ORTHO05D009950 2.3e-10 68.6 51 70.6
BcaC07g38219 Brassica carinata HOM05D007860 ORTHO05D009950 3.0e-10 68.2 57 57.9
A08p20930 Brassica napus HOM05D007860 ORTHO05D009950 3.0e-10 68.2 57 57.9
C08p09770 Brassica napus HOM05D002589 ORTHO05D002742 3.0e-10 68.2 57 57.9
BolC8t48648H Brassica oleracea HOM05D002589 ORTHO05D002742 3.0e-10 68.2 57 57.9
BraA08t34046Z Brassica rapa HOM05D007860 ORTHO05D009950 3.0e-10 68.2 57 57.9
Glyma.18G290700 Glycine max HOM05D007860 ORTHO05D009950 3.0e-10 68.2 61 59.0
Phvul.008G011200 Phaseolus vulgaris HOM05D007860 ORTHO05D009950 3.0e-10 68.2 61 60.7
PSO170G0009 Papaver somniferum HOM05D007860 ORTHO05D009950 3.9e-10 67.8 64 50.0
Hund16092 Selenicereus undatus HOM05D007860 ORTHO05D009950 3.9e-10 67.8 47 72.3
Aa31LG3G410 Aethionema arabicum HOM05D007860 ORTHO05D009950 5.1e-10 67.4 57 52.6
CDE08G0617 Ceratophyllum demersum HOM05D007860 ORTHO05D009950 5.1e-10 67.4 49 65.3
A03p56460 Brassica napus HOM05D002589 ORTHO05D002742 6.7e-10 67.0 56 62.5
BraA03t14716Z Brassica rapa HOM05D007860 ORTHO05D009950 6.7e-10 67.0 56 62.5
COL.COLO4_15031 Corchorus olitorius HOM05D007860 ORTHO05D009950 6.7e-10 67.0 57 61.4
AT4G26055 Arabidopsis thaliana HOM05D007860 ORTHO05D009950 8.8e-10 66.6 58 56.9
HanXRQChr08g0220681 Helianthus annuus HOM05D007860 ORTHO05D009950 1.1e-09 66.2 45 66.7
TPR.G1333 Trifolium pratense HOM05D007860 ORTHO05D009950 1.1e-09 66.2 67 55.2
Sed0021911 Sechium edule HOM05D007860 ORTHO05D009950 1.5e-09 65.9 55 61.8
Sp6g18800 Schrenkiella parvula HOM05D007860 ORTHO05D009950 2.0e-09 65.5 56 60.7
C07p54670 Brassica napus HOM05D007860 ORTHO05D009950 2.5e-09 65.1 57 59.6
BolC7t45956H Brassica oleracea HOM05D007860 ORTHO05D009950 2.5e-09 65.1 57 59.6
CARHR233560 Cardamine hirsuta HOM05D007860 ORTHO05D009950 2.5e-09 65.1 57 57.9
Thhalv10026736m.g Eutrema salsugineum HOM05D007860 ORTHO05D009950 2.5e-09 65.1 48 60.4
Solyc04g150108.1 Solanum lycopersicum HOM05D007860 ORTHO05D009950 2.5e-09 65.1 59 57.6
PGSC0003DMG400027747 Solanum tuberosum HOM05D007860 ORTHO05D009950 2.5e-09 65.1 59 57.6
DCAR_011692 Daucus carota HOM05D007860 ORTHO05D009950 3.3e-09 64.7 48 62.5
Lalb_Chr10g0091671 Lupinus albus HOM05D007860 ORTHO05D009950 3.3e-09 64.7 50 64.0
Peaxi162Scf00760g00224 Petunia axillaris HOM05D007860 ORTHO05D009950 3.3e-09 64.7 50 62.0
Prupe.1G341800 Prunus persica HOM05D007860 ORTHO05D009950 4.3e-09 64.3 58 53.4
SalBow8G2293 Salvia bowleyana HOM05D007860 ORTHO05D009950 4.3e-09 64.3 61 57.4
Sabra10G0157800 Salix brachista HOM05D007860 ORTHO05D009950 5.7e-09 63.9 50 62.0
Cfa009596 Carpinus fangiana HOM05D007860 ORTHO05D009950 7.4e-09 63.5 50 64.0
Zm00001eb205410 Zea mays HOM05D007860 ORTHO05D009950 7.4e-09 63.5 51 62.7
Cc02_g07910 Coffea canephora HOM05D007860 ORTHO05D009950 9.7e-09 63.2 58 60.3
Migut.E01407 Erythranthe guttata HOM05D007860 ORTHO05D009950 9.7e-09 63.2 61 55.7
Migut.E01421 Erythranthe guttata HOM05D007860 ORTHO05D009950 9.7e-09 63.2 61 55.7
BraA03t10609Z Brassica rapa HOM05D007860 ORTHO05D009950 1.3e-08 62.8 57 57.9
CSS0034636 Camellia sinensis var. sinensis HOM05D007860 ORTHO05D009950 1.3e-08 62.8 43 74.4
CiPaw.01G285600 Carya illinoinensis HOM05D007860 ORTHO05D009950 2.2e-08 62.0 45 62.2
CiPaw.01G286200 Carya illinoinensis HOM05D007860 ORTHO05D009950 2.2e-08 62.0 45 62.2
Cc00_g31060 Coffea canephora HOM05D007860 ORTHO05D009950 2.2e-08 62.0 58 58.6
Gohir.A07G000500 Gossypium hirsutum HOM05D007860 ORTHO05D009950 2.2e-08 62.0 62 54.8
RcHm_v2.0_Chr4g0445811 Rosa chinensis HOM05D007860 ORTHO05D009950 2.2e-08 62.0 57 57.9
AT5G57080 Arabidopsis thaliana HOM05D007860 ORTHO05D009950 2.8e-08 61.6 54 57.4
CsaV3_5G026630 Cucumis sativus L. HOM05D007860 ORTHO05D009950 2.8e-08 61.6 51 60.8
Gohir.D04G062700 Gossypium hirsutum HOM05D007860 ORTHO05D009950 2.8e-08 61.6 57 57.9
Gorai.012G070100 Gossypium raimondii HOM05D007860 ORTHO05D009950 2.8e-08 61.6 57 57.9
Nn3g16785 Nelumbo nucifera HOM05D007860 ORTHO05D009950 2.8e-08 61.6 45 66.7
Potri.010G204200 Populus trichocarpa HOM05D007860 ORTHO05D009950 2.8e-08 61.6 58 56.9
unitig_747.g21379 Utricularia gibba HOM05D007860 ORTHO05D009950 2.8e-08 61.6 48 66.7
CAN.G786.12 Capsicum annuum HOM05D007860 ORTHO05D009950 3.7e-08 61.2 58 55.2
Carub.0007s1490 Capsella rubella HOM05D007860 ORTHO05D009950 4.8e-08 60.8 46 60.9
Ciclev10033443m.g Citrus clementina HOM05D007860 ORTHO05D009950 4.8e-08 60.8 43 67.4
AL7G26930 Arabidopsis lyrata HOM05D007860 ORTHO05D009950 6.3e-08 60.5 57 54.4
Gohir.A05G349600 Gossypium hirsutum HOM05D007860 ORTHO05D009950 6.3e-08 60.5 62 53.2
Lalb_Chr11g0073451 Lupinus albus HOM05D007860 ORTHO05D009950 8.2e-08 60.1 50 60.0
Manes.09G185000 Manihot esculenta HOM05D007860 ORTHO05D009950 8.2e-08 60.1 65 50.8
SpUn0576_0010 Schrenkiella parvula HOM05D007860 ORTHO05D009950 8.2e-08 60.1 56 53.6
VMungo1383G1282 Vigna mungo HOM05D007860 ORTHO05D009950 1.8e-07 58.9 42 71.4
BcaB01g04442 Brassica carinata HOM05D007860 ORTHO05D009950 2.4e-07 58.5 55 54.5
MELO3C033702.2 Cucumis melo HOM05D007860 ORTHO05D009950 3.1e-07 58.2 65 49.2
MD16G1008700 Malus domestica HOM05D007860 ORTHO05D009950 4.1e-07 57.8 43 67.4
Psat3g182840 Pisum sativum HOM05D007860 ORTHO05D009950 6.9e-07 57.0 43 67.4
Sc10g0001510 Simmondsia chinensis HOM05D007860 ORTHO05D009950 9.1e-07 56.6 43 67.4
arahy.Tifrunner.gnm1.ann1.WKZY2Y Arachis hypogaea HOM05D007860 ORTHO05D009950 5.9e-06 53.9 41 68.3
ClCG09G019790 Citrullus lanatus HOM05D007860 ORTHO05D009950 5.9e-06 53.9 42 66.7
BcaNung07291 Brassica carinata HOM05D007860 ORTHO05D009950 7.7e-06 53.5 55 52.7


User provided reference genes

Program Settings