Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_33424 Sequoiadendron giganteum HOM05D001087 ORTHO05D005406 2.2e-76 288.9 145 100.0
COL.COLO4_13413 Corchorus olitorius HOM05D001087 ORTHO05D005406 1.5e-21 106.7 72 75.0
Nitab4.5_0000519g0390 Nicotiana tabacum HOM05D011017 ORTHO05D005406 1.5e-21 106.7 77 71.4
PGR042G1457 Punica granatum HOM05D001087 ORTHO05D005406 4.5e-21 105.1 71 71.8
CSS0025073 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D005406 7.6e-21 104.4 81 67.9
Ciclev10014134m.g Citrus clementina HOM05D001087 ORTHO05D005406 7.6e-21 104.4 74 71.6
TWI32G0903 Tripterygium wilfordii HOM05D001087 ORTHO05D005406 7.6e-21 104.4 72 68.1
TAR629G2385 Trochodendron aralioides HOM05D001087 ORTHO05D005406 7.6e-21 104.4 71 73.2
Gohir.A08G038200 Gossypium hirsutum HOM05D001087 ORTHO05D005406 1.0e-20 104.0 72 72.2
Gohir.D08G048400 Gossypium hirsutum HOM05D001087 ORTHO05D005406 1.0e-20 104.0 72 72.2
Gorai.004G047900 Gossypium raimondii HOM05D001087 ORTHO05D005406 1.0e-20 104.0 72 72.2
HanXRQChr17g0550851 Helianthus annuus HOM05D001087 ORTHO05D005406 1.0e-20 104.0 71 73.2
Actinidia19533 Actinidia chinensis HOM05D001087 ORTHO05D005406 1.3e-20 103.6 74 73.0
Nitab4.5_0002901g0050 Nicotiana tabacum HOM05D001087 ORTHO05D005406 1.3e-20 103.6 73 72.6
Mapoly0055s0098 Marchantia polymorpha HOM05D001087 ORTHO05D005406 1.7e-20 103.2 71 74.6
Lsat_1_v5_gn_3_103380 Lactuca sativa HOM05D001087 ORTHO05D005406 2.2e-20 102.8 73 71.2
AUR62017451 Chenopodium quinoa HOM05D001087 ORTHO05D005406 2.9e-20 102.4 73 69.9
AUR62032520 Chenopodium quinoa HOM05D001087 ORTHO05D005406 2.9e-20 102.4 73 69.9
Pp3c10_7760 Physcomitrium patens HOM05D001087 ORTHO05D005406 2.9e-20 102.4 77 70.1
Thecc.04G053100 Theobroma cacao HOM05D001087 ORTHO05D005406 2.9e-20 102.4 72 72.2
Eucgr.H05015 Eucalyptus grandis HOM05D001087 ORTHO05D005406 3.8e-20 102.1 71 71.8
Atru.chr6.2747 Acer truncatum HOM05D001087 ORTHO05D005406 6.5e-20 101.3 74 70.3
CiPaw.03G079200 Carya illinoinensis HOM05D001087 ORTHO05D005406 6.5e-20 101.3 77 66.2
Duzib138G0185 Durio zibethinus HOM05D001087 ORTHO05D005406 6.5e-20 101.3 72 72.2
Sabra14G0106400 Salix brachista HOM05D001087 ORTHO05D005406 6.5e-20 101.3 80 65.0
Potri.014G141100 Populus trichocarpa HOM05D001087 ORTHO05D005406 8.4e-20 100.9 81 64.2
DCAR_000957 Daucus carota HOM05D001087 ORTHO05D005406 1.1e-19 100.5 74 70.3
MBI07_g11062_MAGBIO Magnolia biondii HOM05D001087 ORTHO05D005406 1.1e-19 100.5 71 73.2
Prupe.3G316100 Prunus persica HOM05D001087 ORTHO05D005406 1.1e-19 100.5 72 72.2
SMO353G0092 Selaginella moellendorffii HOM05D001087 ORTHO05D005406 1.1e-19 100.5 71 69.0
Cc07_g01490 Coffea canephora HOM05D001087 ORTHO05D005406 1.4e-19 100.1 73 71.2
CAN.G473.167 Capsicum annuum HOM05D001087 ORTHO05D005406 1.9e-19 99.8 73 69.9
ATR0582G201 Amborella trichopoda HOM05D001087 ORTHO05D005406 2.5e-19 99.4 74 74.3
CANSAT64G1951 Cannabis sativa HOM05D001087 ORTHO05D005406 2.5e-19 99.4 86 62.8
Cpa.g.sc70.26 Carica papaya HOM05D001087 ORTHO05D005406 2.5e-19 99.4 72 70.8
Solyc02g094610.1 Solanum lycopersicum HOM05D001087 ORTHO05D005406 2.5e-19 99.4 73 71.2
Sopen02g039270 Solanum pennellii HOM05D001087 ORTHO05D005406 2.5e-19 99.4 73 71.2
GSVIVG01032937001 Vitis vinifera HOM05D001087 ORTHO05D005406 2.5e-19 99.4 76 68.4
Rhsim08G0036900 Rhododendron simsii HOM05D001087 ORTHO05D005406 3.2e-19 99.0 72 72.2
MSTRG.3036 Avicennia marina HOM05D001087 ORTHO05D005406 4.2e-19 98.6 103 55.3
SalBow4G1044 Salvia bowleyana HOM05D001087 ORTHO05D005406 4.2e-19 98.6 73 68.5
MD09G1000300 Malus domestica HOM05D001087 ORTHO05D005406 7.1e-19 97.8 73 68.5
HPP92_021715 Vanilla planifolia HOM05D001087 ORTHO05D005406 7.1e-19 97.8 73 65.8
Nn4g22026 Nelumbo nucifera HOM05D001087 ORTHO05D005406 9.3e-19 97.4 70 71.4
Peaxi162Scf00420g00945 Petunia axillaris HOM05D001087 ORTHO05D005406 9.3e-19 97.4 71 70.4
Hund04150 Selenicereus undatus HOM05D001087 ORTHO05D005406 9.3e-19 97.4 70 65.7
MELO3C014745.2 Cucumis melo HOM05D001087 ORTHO05D005406 1.2e-18 97.1 77 66.2
CsaV3_3G020140 Cucumis sativus L. HOM05D001087 ORTHO05D005406 1.2e-18 97.1 77 66.2
FvH4_6g54490 Fragaria vesca HOM05D001087 ORTHO05D005406 1.2e-18 97.1 73 68.5
FAN14G5433 Fragaria x ananassa HOM05D001087 ORTHO05D005406 1.2e-18 97.1 73 68.5
FAN27G2264 Fragaria x ananassa HOM05D001087 ORTHO05D005406 1.2e-18 97.1 73 68.5
Manes.04G095500 Manihot esculenta HOM05D001087 ORTHO05D005406 1.2e-18 97.1 77 64.9
HPP92_021688 Vanilla planifolia HOM05D001087 ORTHO05D005406 1.6e-18 96.7 73 65.8
Ah.02g128690 Amaranthus hybridus HOM05D001087 ORTHO05D005406 2.1e-18 96.3 72 69.4
FAN05G2313 Fragaria x ananassa HOM05D001087 ORTHO05D005406 2.1e-18 96.3 73 68.5
EL10Ac6g13922 Beta vulgaris HOM05D001087 ORTHO05D005406 2.7e-18 95.9 73 69.9
ClCG05G012380 Citrullus lanatus HOM05D001087 ORTHO05D005406 3.5e-18 95.5 76 67.1
RcHm_v2.0_Chr2g0176781 Rosa chinensis HOM05D001087 ORTHO05D005406 3.5e-18 95.5 73 68.5
Sed0004915 Sechium edule HOM05D001087 ORTHO05D005406 3.5e-18 95.5 77 64.9
Pp3c14_8290 Physcomitrium patens HOM05D001087 ORTHO05D005406 4.6e-18 95.1 69 69.6
Pp3c14_8293 Physcomitrium patens HOM05D001087 ORTHO05D005406 4.6e-18 95.1 69 69.6
Oeu062515.1 Olea europaea HOM05D001087 ORTHO05D005406 6.0e-18 94.7 73 63.0
Lj1g0002000 Lotus japonicus HOM05D001087 ORTHO05D005406 7.9e-18 94.4 71 64.8
SGA_v2.0_scaffold44G16961 Striga asiatica HOM05D001087 ORTHO05D005406 1.0e-17 94.0 73 67.1
TPR.G31052 Trifolium pratense HOM05D001087 ORTHO05D005406 1.3e-17 93.6 73 64.4
ECA246G3450 Erigeron canadensis HOM05D001087 ORTHO05D005406 1.8e-17 93.2 71 67.6
Medtr7g084880 Medicago truncatula HOM05D001087 ORTHO05D005406 1.8e-17 93.2 71 63.4
Sc16g0004210 Simmondsia chinensis HOM05D001087 ORTHO05D005406 2.3e-17 92.8 81 60.5
Haze_14336 Corylus avellana HOM05D001087 ORTHO05D005406 3.0e-17 92.4 133 45.1
Migut.F00007 Erythranthe guttata HOM05D001087 ORTHO05D005406 3.0e-17 92.4 74 66.2
Lalb_Chr14g0364241 Lupinus albus HOM05D001087 ORTHO05D005406 3.9e-17 92.0 74 63.5
Psat0s4626g0080 Pisum sativum HOM05D001087 ORTHO05D005406 3.9e-17 92.0 69 66.7
Ca_08243_v3 Cicer arietinum L. HOM05D001087 ORTHO05D005406 5.1e-17 91.7 73 64.4
arahy.Tifrunner.gnm1.ann1.65DI7F Arachis hypogaea HOM05D001087 ORTHO05D005406 8.7e-17 90.9 74 62.2
QL02p063912 Quercus lobata HOM05D001087 ORTHO05D005406 8.7e-17 90.9 89 56.2
arahy.Tifrunner.gnm1.ann1.C4QHPC Arachis hypogaea HOM05D001087 ORTHO05D005406 1.1e-16 90.5 74 62.2
Phvul.001G097600 Phaseolus vulgaris HOM05D001087 ORTHO05D005406 1.1e-16 90.5 73 63.0
VMungo1383G1594 Vigna mungo HOM05D001087 ORTHO05D005406 1.1e-16 90.5 73 63.0
Peaxi162Scf00082g00223 Petunia axillaris HOM05D001087 ORTHO05D005406 1.5e-16 90.1 67 67.2
Glyma.16G044400 Glycine max HOM05D001087 ORTHO05D005406 2.5e-16 89.4 73 63.0
Glyma.19G107500 Glycine max HOM05D001087 ORTHO05D005406 2.5e-16 89.4 73 63.0
CDE05G0125 Ceratophyllum demersum HOM05D001087 ORTHO05D005406 4.3e-16 88.6 69 56.5
THA.LOC104805290 Tarenaya hassleriana HOM05D001087 ORTHO05D005406 1.3e-15 87.0 71 59.2
CARHR013280 Cardamine hirsuta HOM05D001087 ORTHO05D005406 2.8e-15 85.9 71 57.7
Thhalv10006676m.g Eutrema salsugineum HOM05D001087 ORTHO05D005406 2.8e-15 85.9 71 57.7
Aqoxy3G01996 Aquilegia oxysepala HOM05D001087 ORTHO05D005406 6.3e-15 84.7 75 58.7
Sp1g11500 Schrenkiella parvula HOM05D001087 ORTHO05D005406 6.3e-15 84.7 71 56.3
Aa31LG1G1850 Aethionema arabicum HOM05D001087 ORTHO05D005406 8.2e-15 84.3 70 57.1
AL1G24570 Arabidopsis lyrata HOM05D001087 ORTHO05D005406 1.8e-14 83.2 71 56.3
AT1G12930 Arabidopsis thaliana HOM05D001087 ORTHO05D005406 1.8e-14 83.2 71 56.3
BcaB08g34240 Brassica carinata HOM05D001087 ORTHO05D005406 1.8e-14 83.2 71 56.3
Carub.0001s1270 Capsella rubella HOM05D001087 ORTHO05D005406 1.8e-14 83.2 71 56.3
PSO017G2606 Papaver somniferum HOM05D001087 ORTHO05D005406 3.1e-14 82.4 74 58.1
PSO478G2418 Papaver somniferum HOM05D001087 ORTHO05D005406 3.1e-14 82.4 74 58.1
A09p63520 Brassica napus HOM05D001087 ORTHO05D005406 4.1e-14 82.0 71 56.3
BraA09t41703Z Brassica rapa HOM05D001087 ORTHO05D005406 4.1e-14 82.0 71 56.3
C08p47020 Brassica napus HOM05D001087 ORTHO05D005406 1.5e-13 80.1 70 55.7
BolC8t52241H Brassica oleracea HOM05D001087 ORTHO05D005406 1.5e-13 80.1 70 55.7
GSVIVG01031683001 Vitis vinifera HOM05D006947 ORTHO05D005406 5.0e-12 75.1 50 74.0
FAN03G2103 Fragaria x ananassa HOM05D001087 ORTHO05D005406 4.2e-11 72.0 69 58.0
FAN04G2467 Fragaria x ananassa HOM05D001087 ORTHO05D005406 5.5e-11 71.6 68 58.8
FAN25G2039 Fragaria x ananassa HOM05D001087 ORTHO05D005406 5.5e-11 71.6 68 58.8
CBR_g30317 Chara braunii HOM05D001087 ORTHO05D005406 1.2e-10 70.5 95 41.1
FAN04G2314 Fragaria x ananassa HOM05D001087 ORTHO05D005406 2.7e-10 69.3 40 80.0
Zm00001eb197740 Zea mays HOM05D001087 ORTHO05D005406 1.8e-09 66.6 73 46.6


User provided reference genes

Program Settings