Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_33312 Sequoiadendron giganteum HOM05D001318 ORTHO05D001152 2.3e-41 171.8 85 100.0
ATR0188G015 Amborella trichopoda HOM05D001318 ORTHO05D001152 7.2e-11 70.5 54 63.0
MBI06_g05048_MAGBIO Magnolia biondii HOM05D001318 ORTHO05D001152 1.6e-10 69.3 49 65.3
SEGI_33877 Sequoiadendron giganteum HOM05D001318 ORTHO05D001152 1.6e-10 69.3 50 70.0
Thecc.01G343900 Theobroma cacao HOM05D001318 ORTHO05D001152 1.0e-09 66.6 50 66.0
QL04p058035 Quercus lobata HOM05D001318 ORTHO05D001152 1.4e-09 66.2 53 64.2
Atru.chr5.656 Acer truncatum HOM05D001318 ORTHO05D001152 3.0e-09 65.1 50 66.0
Ciclev10020704m.g Citrus clementina HOM05D001318 ORTHO05D001152 3.0e-09 65.1 50 66.0
TWI59G0130 Tripterygium wilfordii HOM05D001318 ORTHO05D001152 5.1e-09 64.3 53 58.5
Haze_15644 Corylus avellana HOM05D001318 ORTHO05D001152 8.8e-09 63.5 50 64.0
MD01G1079500 Malus domestica HOM05D001318 ORTHO05D001152 8.8e-09 63.5 50 64.0
MD07G1148300 Malus domestica HOM05D001318 ORTHO05D001152 8.8e-09 63.5 50 64.0
Manes.05G023900 Manihot esculenta HOM05D001318 ORTHO05D001152 1.1e-08 63.2 49 63.3
Sabra02G0142400 Salix brachista HOM05D001318 ORTHO05D001152 1.5e-08 62.8 49 61.2
CiPaw.02G040000 Carya illinoinensis HOM05D001318 ORTHO05D001152 1.9e-08 62.4 50 64.0
Dinv18740 Davidia involucrata HOM05D001318 ORTHO05D001152 1.9e-08 62.4 50 62.0
HanXRQChr05g0159941 Helianthus annuus HOM05D001318 ORTHO05D001152 1.9e-08 62.4 50 62.0
Aa31LG1G27760 Aethionema arabicum HOM05D001318 ORTHO05D001152 2.5e-08 62.0 50 66.0
FAN01G2956 Fragaria x ananassa HOM05D000032 ORTHO05D002227 2.5e-08 62.0 50 62.0
Oeu007902.1 Olea europaea HOM05D001318 ORTHO05D001152 2.5e-08 62.0 50 62.0
Potri.002G169900 Populus trichocarpa HOM05D001318 ORTHO05D001152 2.5e-08 62.0 49 61.2
Prupe.2G186600 Prunus persica HOM05D001318 ORTHO05D001152 2.5e-08 62.0 50 64.0
TAR375G0770 Trochodendron aralioides HOM05D001318 ORTHO05D001152 2.5e-08 62.0 54 59.3
Ah.05g179700 Amaranthus hybridus HOM05D001318 ORTHO05D001152 3.3e-08 61.6 49 63.3
ClCG06G002210 Citrullus lanatus HOM05D001318 ORTHO05D001152 3.3e-08 61.6 50 60.0
COL.COLO4_06296 Corchorus olitorius HOM05D001318 ORTHO05D001152 3.3e-08 61.6 50 60.0
Nn3g19027 Nelumbo nucifera HOM05D001318 ORTHO05D001152 3.3e-08 61.6 50 62.0
RcHm_v2.0_Chr1g0359301 Rosa chinensis HOM05D001318 ORTHO05D001152 3.3e-08 61.6 50 64.0
Hund16705 Selenicereus undatus HOM05D001318 ORTHO05D001152 3.3e-08 61.6 49 61.2
AL5G44210 Arabidopsis lyrata HOM05D001318 ORTHO05D001152 4.3e-08 61.2 56 57.1
Sabra14G0071600 Salix brachista HOM05D001318 ORTHO05D001152 4.3e-08 61.2 49 61.2
AUR62004477 Chenopodium quinoa HOM05D001318 ORTHO05D001152 5.7e-08 60.8 49 61.2
Potri.014G097800 Populus trichocarpa HOM05D001318 ORTHO05D001152 5.7e-08 60.8 49 61.2
AT3G61700 Arabidopsis thaliana HOM05D001318 ORTHO05D001152 7.4e-08 60.5 49 63.3
EL10Ac1g00287 Beta vulgaris HOM05D001318 ORTHO05D001152 7.4e-08 60.5 49 61.2
Carub.0005s2845 Capsella rubella HOM05D001318 ORTHO05D001152 7.4e-08 60.5 49 63.3
Sc01g0002770 Simmondsia chinensis HOM05D001318 ORTHO05D001152 7.4e-08 60.5 49 61.2
Gohir.D11G101400 Gossypium hirsutum HOM05D001318 ORTHO05D001152 9.7e-08 60.1 50 62.0
Gorai.007G108000 Gossypium raimondii HOM05D001318 ORTHO05D001152 9.7e-08 60.1 50 62.0
Lsat_1_v5_gn_5_1601 Lactuca sativa HOM05D001318 ORTHO05D001152 9.7e-08 60.1 50 58.0
Manes.01G247000 Manihot esculenta HOM05D001318 ORTHO05D001152 9.7e-08 60.1 48 60.4
Oeu043211.2 Olea europaea HOM05D001318 ORTHO05D001152 9.7e-08 60.1 52 59.6
Sp4g28440 Schrenkiella parvula HOM05D001318 ORTHO05D001152 9.7e-08 60.1 73 49.3
Aqoxy5G04208 Aquilegia oxysepala HOM05D001318 ORTHO05D001152 1.3e-07 59.7 49 61.2
THA.LOC104817346 Tarenaya hassleriana HOM05D001318 ORTHO05D001152 1.3e-07 59.7 50 60.0
A09p53790 Brassica napus HOM05D001318 ORTHO05D001152 1.7e-07 59.3 49 63.3
Ca_23541_v3 Cicer arietinum L. HOM05D001318 ORTHO05D001152 1.7e-07 59.3 49 61.2
Lj7A501G46 Lonicera japonica HOM05D001318 ORTHO05D001152 1.7e-07 59.3 50 60.0
arahy.Tifrunner.gnm1.ann1.1EFM0N Arachis hypogaea HOM05D001318 ORTHO05D001152 2.2e-07 58.9 49 61.2
arahy.Tifrunner.gnm1.ann1.Z287JL Arachis hypogaea HOM05D001318 ORTHO05D001152 2.2e-07 58.9 49 61.2
BcaNung05605 Brassica carinata HOM05D001318 ORTHO05D001152 2.2e-07 58.9 50 64.0
FvH4_7g16290 Fragaria vesca HOM05D001318 ORTHO05D001152 2.2e-07 58.9 49 61.2
FAN03G1438 Fragaria x ananassa HOM05D001318 ORTHO05D001152 2.2e-07 58.9 49 61.2
FAN06G1952 Fragaria x ananassa HOM05D001318 ORTHO05D001152 2.2e-07 58.9 49 61.2
FAN06G3084 Fragaria x ananassa HOM05D001318 ORTHO05D001152 2.2e-07 58.9 49 61.2
FAN10G1039 Fragaria x ananassa HOM05D001318 ORTHO05D001152 2.2e-07 58.9 49 61.2
FAN10G2334 Fragaria x ananassa HOM05D001318 ORTHO05D001152 2.2e-07 58.9 49 61.2
Glyma.07G056500 Glycine max HOM05D001318 ORTHO05D001152 2.2e-07 58.9 49 61.2
Glyma.16G025500 Glycine max HOM05D001318 ORTHO05D001152 2.2e-07 58.9 49 61.2
VMungo0331G0636 Vigna mungo HOM05D001318 ORTHO05D001152 2.2e-07 58.9 49 61.2
AT2G46420 Arabidopsis thaliana HOM05D001318 ORTHO05D001152 2.8e-07 58.5 50 62.0
BcaC07g42606 Brassica carinata HOM05D001318 ORTHO05D001152 2.8e-07 58.5 50 62.0
Thhalv10006433m.g Eutrema salsugineum HOM05D001318 ORTHO05D001152 2.8e-07 58.5 50 62.0
Gohir.A11G096700 Gossypium hirsutum HOM05D001318 ORTHO05D001152 2.8e-07 58.5 50 60.0
HanXRQChr11g0334041 Helianthus annuus HOM05D001318 ORTHO05D001152 2.8e-07 58.5 50 58.0
Lalb_Chr17g0342521 Lupinus albus HOM05D001318 ORTHO05D001152 2.8e-07 58.5 49 61.2
SEGI_37302 Sequoiadendron giganteum HOM05D001544 ORTHO05D002732 2.8e-07 58.5 75 50.7
unitig_736.g22812 Utricularia gibba HOM05D001318 ORTHO05D001152 2.8e-07 58.5 51 60.8
AL4G45720 Arabidopsis lyrata HOM05D001318 ORTHO05D001152 3.7e-07 58.2 50 60.0
CAN.G38.30 Capsicum annuum HOM05D001318 ORTHO05D001152 3.7e-07 58.2 53 58.5
CARHR172010 Cardamine hirsuta HOM05D001318 ORTHO05D001152 3.7e-07 58.2 49 63.3
Gohir.A12G111800 Gossypium hirsutum HOM05D001318 ORTHO05D001152 3.7e-07 58.2 50 60.0
Medtr8g027760 Medicago truncatula HOM05D001318 ORTHO05D001152 3.7e-07 58.2 49 61.2
Psat4g160600 Pisum sativum HOM05D001318 ORTHO05D001152 3.7e-07 58.2 49 61.2
PGR031G2986 Punica granatum HOM05D001318 ORTHO05D001152 3.7e-07 58.2 50 62.0
Sed0019577 Sechium edule HOM05D001318 ORTHO05D001152 3.7e-07 58.2 50 58.0
TPR.G15350 Trifolium pratense HOM05D001318 ORTHO05D001152 3.7e-07 58.2 49 61.2
CARHR141700 Cardamine hirsuta HOM05D001318 ORTHO05D001152 4.8e-07 57.8 50 60.0
Nn1g01886 Nelumbo nucifera HOM05D001318 ORTHO05D001152 4.8e-07 57.8 50 56.0
Phvul.010G113000 Phaseolus vulgaris HOM05D001318 ORTHO05D001152 4.8e-07 57.8 49 59.2
THA.LOC104802063 Tarenaya hassleriana HOM05D001318 ORTHO05D001152 4.8e-07 57.8 50 60.0
BcaC02g12531 Brassica carinata HOM05D001318 ORTHO05D001152 6.3e-07 57.4 50 62.0
A05p01350 Brassica napus HOM05D001318 ORTHO05D001152 6.3e-07 57.4 50 62.0
C04p01530 Brassica napus HOM05D001318 ORTHO05D001152 6.3e-07 57.4 50 62.0
BolC4t21804H Brassica oleracea HOM05D001318 ORTHO05D001152 6.3e-07 57.4 50 62.0
BraA05t19133Z Brassica rapa HOM05D001318 ORTHO05D001152 6.3e-07 57.4 50 62.0
CiPaw.01G074900 Carya illinoinensis HOM05D001318 ORTHO05D001152 6.3e-07 57.4 49 61.2
Gorai.008G124700 Gossypium raimondii HOM05D001318 ORTHO05D001152 6.3e-07 57.4 50 60.0
PGR031G2052 Punica granatum HOM05D001318 ORTHO05D001152 6.3e-07 57.4 49 63.3
Rhsim01G0172000 Rhododendron simsii HOM05D001318 ORTHO05D001152 6.3e-07 57.4 50 60.0
HPP92_020020 Vanilla planifolia HOM05D001318 ORTHO05D001152 6.3e-07 57.4 77 44.2
CsaV3_6G008290 Cucumis sativus L. HOM05D001318 ORTHO05D001152 8.2e-07 57.0 50 58.0
Sp5g01690 Schrenkiella parvula HOM05D001318 ORTHO05D001152 8.2e-07 57.0 50 60.0
Eucgr.D02368 Eucalyptus grandis HOM05D001318 ORTHO05D001152 1.1e-06 56.6 48 62.5
Lalb_Chr10g0100471 Lupinus albus HOM05D001318 ORTHO05D001152 1.1e-06 56.6 49 59.2
BraA09t40797Z Brassica rapa HOM05D000751 ORTHO05D000889 1.4e-06 56.2 47 63.8
MELO3C022309.2 Cucumis melo HOM05D001318 ORTHO05D001152 1.4e-06 56.2 50 58.0
PSO170G4448 Papaver somniferum HOM05D001318 ORTHO05D001152 1.4e-06 56.2 49 55.1
Sopen01g006170 Solanum pennellii HOM05D001318 ORTHO05D001152 1.4e-06 56.2 53 56.6
PGSC0003DMG400009613 Solanum tuberosum HOM05D001318 ORTHO05D001152 1.4e-06 56.2 53 56.6
GSVIVG01027086001 Vitis vinifera HOM05D001318 ORTHO05D001152 1.4e-06 56.2 50 58.0
GSVIVG01028709001 Vitis vinifera HOM05D001318 ORTHO05D001152 1.4e-06 56.2 50 56.0
C08p36600 Brassica napus HOM05D001318 ORTHO05D001152 1.8e-06 55.8 46 63.0
BolC8t51243H Brassica oleracea HOM05D001318 ORTHO05D001152 1.8e-06 55.8 46 63.0
CSS0025773 Camellia sinensis var. sinensis HOM05D001318 ORTHO05D001152 1.8e-06 55.8 49 61.2
CSS0039754 Camellia sinensis var. sinensis HOM05D001318 ORTHO05D001152 1.8e-06 55.8 49 61.2
Hund27205 Selenicereus undatus HOM05D001318 ORTHO05D001152 1.8e-06 55.8 49 55.1
CANSAT56G2581 Cannabis sativa HOM05D001318 ORTHO05D001152 2.4e-06 55.5 50 56.0
Carub.0004s2912 Capsella rubella HOM05D001318 ORTHO05D001152 2.4e-06 55.5 50 58.0
CDE10G0555 Ceratophyllum demersum HOM05D001318 ORTHO05D001152 2.4e-06 55.5 48 56.2
CDE10G0647 Ceratophyllum demersum HOM05D001318 ORTHO05D001152 2.4e-06 55.5 48 56.2
CsaV3_3G008120 Cucumis sativus L. HOM05D001318 ORTHO05D001152 2.4e-06 55.5 49 59.2
vmacro12680 Vaccinium macrocarpon HOM05D001318 ORTHO05D001152 2.4e-06 55.5 50 58.0
Actinidia28503 Actinidia chinensis HOM05D001318 ORTHO05D001152 3.1e-06 55.1 50 58.0
Lalb_Chr04g0254451 Lupinus albus HOM05D001318 ORTHO05D001152 3.1e-06 55.1 49 59.2
SGA_v2.0_scaffold5G03012 Striga asiatica HOM05D001318 ORTHO05D001152 3.1e-06 55.1 51 54.9
Gorai.004G152200 Gossypium raimondii HOM05D001318 ORTHO05D001152 4.1e-06 54.7 50 56.0
Lj3g0015948 Lotus japonicus HOM05D001318 ORTHO05D001152 4.1e-06 54.7 50 62.0
Nitab4.5_0000141g0200 Nicotiana tabacum HOM05D001318 ORTHO05D001152 4.1e-06 54.7 49 59.2
Thhalv10001501m.g Eutrema salsugineum HOM05D001318 ORTHO05D001152 5.3e-06 54.3 50 58.0
Lj9C597T7 Lonicera japonica HOM05D001318 ORTHO05D001152 5.3e-06 54.3 50 58.0
TWI23G0869 Tripterygium wilfordii HOM05D001318 ORTHO05D001152 5.3e-06 54.3 49 63.3
CDE04G1178 Ceratophyllum demersum HOM05D001318 ORTHO05D001152 6.9e-06 53.9 57 49.1
SalBow3G0525 Salvia bowleyana HOM05D001318 ORTHO05D001152 6.9e-06 53.9 51 54.9
CDE03G0264 Ceratophyllum demersum HOM05D001318 ORTHO05D001152 9.1e-06 53.5 57 47.4
Gohir.D12G115100 Gossypium hirsutum HOM05D001318 ORTHO05D001152 9.1e-06 53.5 50 58.0


User provided reference genes

Program Settings