Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_32859 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 9.1e-90 333.6 170 100.0
SEGI_32911 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 9.1e-90 333.6 170 100.0
Pp3c12_6500 Physcomitrium patens HOM05D005137 ORTHO05D006478 4.4e-52 208.4 168 57.1
Mapoly0118s0004 Marchantia polymorpha HOM05D005137 ORTHO05D006478 1.0e-48 197.2 168 58.3
CSS0031544 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 6.6e-48 194.5 170 58.8
CSS0044586 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 6.6e-48 194.5 170 58.8
Ciclev10002730m.g Citrus clementina HOM05D005137 ORTHO05D006478 6.6e-48 194.5 170 58.8
Atru.chr13.1812 Acer truncatum HOM05D005137 ORTHO05D006478 4.3e-47 191.8 170 57.6
Eucgr.F04136 Eucalyptus grandis HOM05D005137 ORTHO05D006478 5.6e-47 191.4 170 57.6
Peaxi162Scf00020g02234 Petunia axillaris HOM05D005137 ORTHO05D006478 5.6e-47 191.4 170 57.6
Potri.013G114800 Populus trichocarpa HOM05D005137 ORTHO05D006478 5.6e-47 191.4 169 56.2
Migut.N03340 Erythranthe guttata HOM05D005137 ORTHO05D006478 9.5e-47 190.7 167 57.5
Cfa018205 Carpinus fangiana HOM05D005137 ORTHO05D006478 1.2e-46 190.3 170 56.5
MELO3C024753.2 Cucumis melo HOM05D005137 ORTHO05D006478 1.6e-46 189.9 170 58.8
PGSC0003DMG400033629 Solanum tuberosum HOM05D005137 ORTHO05D006478 1.6e-46 189.9 170 57.6
CSS0049152 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 2.1e-46 189.5 170 57.6
HanXRQChr01g0027021 Helianthus annuus HOM05D005137 ORTHO05D006478 2.1e-46 189.5 170 57.1
Oeu039592.1 Olea europaea HOM05D005137 ORTHO05D006478 2.8e-46 189.1 170 55.9
CAN.G623.4 Capsicum annuum HOM05D005137 ORTHO05D006478 3.6e-46 188.7 170 57.6
CsaV3_2G035870 Cucumis sativus L. HOM05D005137 ORTHO05D006478 3.6e-46 188.7 170 58.2
SalBow6G2431 Salvia bowleyana HOM05D005137 ORTHO05D006478 3.6e-46 188.7 170 57.1
SalBow6G5561 Salvia bowleyana HOM05D005137 ORTHO05D006478 3.6e-46 188.7 170 57.1
Sopen08g021770 Solanum pennellii HOM05D005137 ORTHO05D006478 3.6e-46 188.7 170 57.1
Cpa.g.sc66.58 Carica papaya HOM05D005137 ORTHO05D006478 4.7e-46 188.3 170 52.9
DCAR_006419 Daucus carota HOM05D005137 ORTHO05D006478 4.7e-46 188.3 170 55.3
Gorai.009G263900 Gossypium raimondii HOM05D005137 ORTHO05D006478 4.7e-46 188.3 170 56.5
Lsat_1_v5_gn_1_53501 Lactuca sativa HOM05D005137 ORTHO05D006478 4.7e-46 188.3 170 57.1
Solyc08g067830.3 Solanum lycopersicum HOM05D005137 ORTHO05D006478 4.7e-46 188.3 170 57.1
Duzib177G1119 Durio zibethinus HOM05D005137 ORTHO05D006478 6.2e-46 188.0 170 56.5
Gohir.D05G253100 Gossypium hirsutum HOM05D005137 ORTHO05D006478 6.2e-46 188.0 170 56.5
MD10G1046500 Malus domestica HOM05D005137 ORTHO05D006478 6.2e-46 188.0 170 57.1
Thecc.08G201900 Theobroma cacao HOM05D005137 ORTHO05D006478 8.0e-46 187.6 170 57.1
MSTRG.22441 Avicennia marina HOM05D005137 ORTHO05D006478 1.0e-45 187.2 170 56.5
ECA248G1561 Erigeron canadensis HOM05D005137 ORTHO05D006478 1.0e-45 187.2 170 57.1
Gohir.A05G250700 Gossypium hirsutum HOM05D005137 ORTHO05D006478 1.0e-45 187.2 170 56.5
Manes.02G220500 Manihot esculenta HOM05D005137 ORTHO05D006478 1.0e-45 187.2 170 57.1
Sed0020054 Sechium edule HOM05D005137 ORTHO05D006478 1.0e-45 187.2 170 57.6
TAR628G0708 Trochodendron aralioides HOM05D005137 ORTHO05D006478 1.4e-45 186.8 170 55.3
ATR0584G018 Amborella trichopoda HOM05D005137 ORTHO05D006478 1.8e-45 186.4 170 57.6
RcHm_v2.0_Chr6g0272201 Rosa chinensis HOM05D005137 ORTHO05D006478 1.8e-45 186.4 170 56.5
Dinv41687 Davidia involucrata HOM05D005137 ORTHO05D006478 2.3e-45 186.0 170 55.3
Oeu021007.1 Olea europaea HOM05D005137 ORTHO05D006478 2.3e-45 186.0 170 56.5
Cc10_g11140 Coffea canephora HOM05D005137 ORTHO05D006478 3.1e-45 185.7 170 54.7
MD05G1040400 Malus domestica HOM05D005137 ORTHO05D006478 3.1e-45 185.7 170 55.9
PSO210G7193 Papaver somniferum HOM05D005137 ORTHO05D006478 3.1e-45 185.7 170 57.6
Sabra13G0097100 Salix brachista HOM05D005137 ORTHO05D006478 3.1e-45 185.7 169 56.2
Prupe.8G054100 Prunus persica HOM05D005137 ORTHO05D006478 5.2e-45 184.9 170 56.5
Potri.019G085500 Populus trichocarpa HOM05D005137 ORTHO05D006478 6.8e-45 184.5 169 53.8
CDE05G2425 Ceratophyllum demersum HOM05D005137 ORTHO05D006478 1.5e-44 183.3 170 55.3
Aqoxy5G03157 Aquilegia oxysepala HOM05D005137 ORTHO05D006478 2.0e-44 183.0 168 56.0
Glyma.16G156600 Glycine max HOM05D005137 ORTHO05D006478 2.0e-44 183.0 170 54.1
PSO238G0018 Papaver somniferum HOM05D005137 ORTHO05D006478 2.0e-44 183.0 170 57.1
PGR004G0411 Punica granatum HOM05D005137 ORTHO05D006478 2.0e-44 183.0 170 56.5
THA.LOC104806781 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 2.6e-44 182.6 170 55.3
Duzib116G0364 Durio zibethinus HOM05D005137 ORTHO05D006478 3.4e-44 182.2 170 54.7
Phvul.004G084500 Phaseolus vulgaris HOM05D005137 ORTHO05D006478 3.4e-44 182.2 170 54.1
SGA_v2.0_scaffold149G36609 Striga asiatica HOM05D005137 ORTHO05D006478 3.4e-44 182.2 170 55.3
CANSAT25G3131 Cannabis sativa HOM05D005137 ORTHO05D006478 4.4e-44 181.8 170 55.9
AL1G48900 Arabidopsis lyrata HOM05D005137 ORTHO05D006478 7.5e-44 181.0 170 56.5
Thhalv10008956m.g Eutrema salsugineum HOM05D005137 ORTHO05D006478 7.5e-44 181.0 170 57.1
unitig_52.g17664 Utricularia gibba HOM05D005137 ORTHO05D006478 7.5e-44 181.0 170 55.9
arahy.Tifrunner.gnm1.ann1.RF3N8D Arachis hypogaea HOM05D005137 ORTHO05D006478 1.3e-43 180.3 170 55.9
arahy.Tifrunner.gnm1.ann1.UQ6TGS Arachis hypogaea HOM05D005137 ORTHO05D006478 1.3e-43 180.3 170 56.5
AagrBONN_evm.TU.Sc2ySwM_117.1441 Anthoceros agrestis HOM05D005137 ORTHO05D006478 1.7e-43 179.9 159 54.7
AT1G34350 Arabidopsis thaliana HOM05D005137 ORTHO05D006478 2.9e-43 179.1 170 55.3
Glyma.02G074600 Glycine max HOM05D005137 ORTHO05D006478 3.7e-43 178.7 170 52.9
TWI34G1514 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 3.7e-43 178.7 170 54.1
Carub.0001s3248 Capsella rubella HOM05D005137 ORTHO05D006478 4.9e-43 178.3 170 56.5
Nn5g27795 Nelumbo nucifera HOM05D005137 ORTHO05D006478 4.9e-43 178.3 170 54.7
CiPaw.15G082700 Carya illinoinensis HOM05D005137 ORTHO05D006478 6.4e-43 177.9 170 54.7
TWI32G0414 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 6.4e-43 177.9 170 54.7
GSVIVG01023270001 Vitis vinifera HOM05D005137 ORTHO05D006478 6.4e-43 177.9 170 54.1
FvH4_2g12231 Fragaria vesca HOM05D005137 ORTHO05D006478 8.3e-43 177.6 170 54.1
Glyma.09G166500 Glycine max HOM05D005137 ORTHO05D006478 1.1e-42 177.2 170 52.9
Nitab4.5_0000125g0160 Nicotiana tabacum HOM05D005137 ORTHO05D006478 1.1e-42 177.2 170 54.7
CANSAT64G0780 Cannabis sativa HOM05D005137 ORTHO05D006478 1.9e-42 176.4 170 54.7
Medtr3g078663 Medicago truncatula HOM05D005137 ORTHO05D006478 1.9e-42 176.4 170 52.9
BcaB03g13677 Brassica carinata HOM05D005137 ORTHO05D006478 2.4e-42 176.0 170 54.1
Haze_17904 Corylus avellana HOM05D005137 ORTHO05D006478 2.4e-42 176.0 194 50.0
FAN20G1842 Fragaria x ananassa HOM05D005137 ORTHO05D006478 2.4e-42 176.0 170 53.5
Sp1g29570 Schrenkiella parvula HOM05D005137 ORTHO05D006478 3.2e-42 175.6 170 55.3
THA.LOC104813096 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 4.1e-42 175.3 170 51.8
Ca_16220_v3 Cicer arietinum L. HOM05D005137 ORTHO05D006478 5.4e-42 174.9 170 52.9
C06p11610 Brassica napus HOM05D005137 ORTHO05D006478 9.2e-42 174.1 170 54.1
HPP92_025038 Vanilla planifolia HOM05D005137 ORTHO05D006478 1.2e-41 173.7 170 52.4
A08p08280 Brassica napus HOM05D005137 ORTHO05D006478 1.6e-41 173.3 170 55.3
Os05g0432500 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 1.6e-41 173.3 170 52.4
Hund16805 Selenicereus undatus HOM05D005137 ORTHO05D006478 1.6e-41 173.3 170 51.2
Sc01g0001710 Simmondsia chinensis HOM05D005137 ORTHO05D006478 1.6e-41 173.3 170 52.9
BcaB07g33131 Brassica carinata HOM05D005137 ORTHO05D006478 2.0e-41 172.9 170 54.1
ClCG02G007860 Citrullus lanatus HOM05D005137 ORTHO05D006478 2.0e-41 172.9 165 56.4
Hund27077 Selenicereus undatus HOM05D005137 ORTHO05D006478 2.0e-41 172.9 167 52.1
AUR62023580 Chenopodium quinoa HOM05D005137 ORTHO05D006478 2.7e-41 172.6 168 52.4
PSO063G4111 Papaver somniferum HOM05D005137 ORTHO05D006478 2.7e-41 172.6 173 53.2
Lj1g0006567 Lotus japonicus HOM05D005137 ORTHO05D006478 3.5e-41 172.2 170 51.8
Lalb_Chr03g0035851 Lupinus albus HOM05D005137 ORTHO05D006478 4.6e-41 171.8 170 51.8
FAN27G0578 Fragaria x ananassa HOM05D005137 ORTHO05D006478 6.0e-41 171.4 170 52.4
Psat5g109360 Pisum sativum HOM05D005137 ORTHO05D006478 7.8e-41 171.0 166 52.4
VMungo0464G1968 Vigna mungo HOM05D005137 ORTHO05D006478 7.8e-41 171.0 170 50.0
Aa31LG6G8420 Aethionema arabicum HOM05D005137 ORTHO05D006478 1.3e-40 170.2 179 50.3
BcaC08g43783 Brassica carinata HOM05D005137 ORTHO05D006478 1.3e-40 170.2 170 52.9
BolC6t36295H Brassica oleracea HOM05D005137 ORTHO05D006478 1.3e-40 170.2 170 52.9
BcaC05g27759 Brassica carinata HOM05D005137 ORTHO05D006478 2.3e-40 169.5 170 52.9
C05p37550 Brassica napus HOM05D005137 ORTHO05D006478 2.3e-40 169.5 170 52.9
Lalb_Chr01g0009971 Lupinus albus HOM05D005137 ORTHO05D006478 2.3e-40 169.5 170 51.8
SMO304G0014 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 1.1e-39 167.2 161 52.8
EL10Ac1g00786 Beta vulgaris HOM05D005137 ORTHO05D006478 7.3e-39 164.5 170 48.2
Zm00001eb174480 Zea mays HOM05D005137 ORTHO05D006478 9.5e-39 164.1 170 48.8
Os08g0104100 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 2.3e-37 159.5 168 48.2
BolC8t47866H Brassica oleracea HOM05D005137 ORTHO05D006478 4.0e-37 158.7 191 48.7
BraA08t32846Z Brassica rapa HOM05D005137 ORTHO05D006478 1.5e-36 156.8 199 46.7
Medtr1g083990 Medicago truncatula HOM05D001444 ORTHO05D006478 7.5e-36 154.5 180 47.2
BolC5t32496H Brassica oleracea HOM05D005137 ORTHO05D006478 9.8e-36 154.1 197 45.2
SMO115G0137 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 1.2e-33 147.1 122 53.3
CARHR033800 Cardamine hirsuta HOM05D005137 ORTHO05D006478 5.6e-31 138.3 139 52.5
Nitab4.5_0006579g0080 Nicotiana tabacum HOM05D005137 ORTHO05D006478 5.6e-31 138.3 170 46.5
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 3.6e-30 135.6 138 50.0
Glyma.16G216600 Glycine max HOM05D005137 ORTHO05D006478 6.2e-30 134.8 117 59.0
Cre02.g142150 Chlamydomonas reinhardtii HOM05D005137 ORTHO05D006478 1.3e-27 127.1 151 43.0
CAN.G21.12 Capsicum annuum HOM05D005137 ORTHO05D006478 8.4e-27 124.4 98 63.3
AUR62004663 Chenopodium quinoa HOM05D005137 ORTHO05D006478 1.1e-26 124.0 179 42.5
Actinidia32879 Actinidia chinensis HOM05D005137 ORTHO05D006478 2.7e-25 119.4 92 64.1
unitig_62.g23355 Utricularia gibba HOM05D005137 ORTHO05D006478 2.7e-25 119.4 175 45.1
Lj7P297T42 Lonicera japonica HOM05D005137 ORTHO05D006478 3.3e-23 112.5 83 66.3
COL.COLO4_35446 Corchorus olitorius HOM05D005137 ORTHO05D006478 5.6e-23 111.7 227 34.8
Peaxi162Scf00105g01425 Petunia axillaris HOM05D005137 ORTHO05D006478 5.6e-23 111.7 91 64.8
Rhsim06G0097400 Rhododendron simsii HOM05D005137 ORTHO05D006478 5.6e-23 111.7 82 67.1
QL02p034100 Quercus lobata HOM05D005137 ORTHO05D006478 9.6e-23 110.9 83 65.1
MCO05G717 Micromonas commoda HOM05D005137 ORTHO05D006478 1.5e-15 87.0 119 34.5
SGA_v2.0_scaffold386G50489 Striga asiatica HOM05D005137 ORTHO05D006478 1.9e-15 86.7 95 51.6
arahy.Tifrunner.gnm1.ann1.T3MISZ Arachis hypogaea HOM05D005137 ORTHO05D006478 1.6e-14 83.6 66 60.6
BraA09t38756Z Brassica rapa HOM05D005137 ORTHO05D006478 2.1e-14 83.2 99 43.4
Zm00001eb289230 Zea mays HOM05D005137 ORTHO05D006478 2.1e-14 83.2 90 50.0
QL02p034107 Quercus lobata HOM05D005137 ORTHO05D006478 1.8e-13 80.1 88 47.7
arahy.Tifrunner.gnm1.ann1.T6GVNL Arachis hypogaea HOM05D005137 ORTHO05D006478 3.0e-08 62.8 51 58.8
arahy.Tifrunner.gnm1.ann1.84LCSI Arachis hypogaea HOM05D005137 ORTHO05D013367 1.1e-07 60.8 45 64.4
SGA_v2.0_scaffold1053G53813 Striga asiatica HOM05D005137 ORTHO05D006478 4.3e-07 58.9 76 46.1
Dinv30978 Davidia involucrata HOM05D005137 ORTHO05D006478 9.6e-07 57.8 75 38.7
arahy.Tifrunner.gnm1.ann1.A3G9LL Arachis hypogaea HOM05D005137 ORTHO05D006478 4.8e-06 55.5 48 58.3


User provided reference genes

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