Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_32847 Sequoiadendron giganteum HOM05D003646 ORTHO05D004503 5.2e-56 220.7 104 100.0
Ciclev10015526m.g Citrus clementina HOM05D003646 ORTHO05D004503 2.9e-14 82.0 63 61.9
Prupe.3G305700 Prunus persica HOM05D003646 ORTHO05D004503 1.9e-13 79.3 89 48.3
Ca_26781_v3 Cicer arietinum L. HOM05D003646 ORTHO05D004503 3.2e-13 78.6 63 60.3
Atru.chr6.2563 Acer truncatum HOM05D003646 ORTHO05D004503 4.2e-13 78.2 63 58.7
arahy.Tifrunner.gnm1.ann1.415AAL Arachis hypogaea HOM05D003646 ORTHO05D004503 5.5e-13 77.8 63 58.7
arahy.Tifrunner.gnm1.ann1.ZHHZ35 Arachis hypogaea HOM05D003646 ORTHO05D004503 5.5e-13 77.8 63 58.7
Nitab4.5_0011569g0050 Nicotiana tabacum HOM05D003646 ORTHO05D004503 5.5e-13 77.8 63 58.7
Lj2g0025838 Lotus japonicus HOM05D003646 ORTHO05D004503 7.2e-13 77.4 63 58.7
Lalb_Chr21g0317451 Lupinus albus HOM05D003646 ORTHO05D004503 7.2e-13 77.4 63 58.7
Peaxi162Scf00420g00552 Petunia axillaris HOM05D003646 ORTHO05D004503 7.2e-13 77.4 63 57.1
Peaxi162Scf00692g00518 Petunia axillaris HOM05D003646 ORTHO05D004503 7.2e-13 77.4 63 57.1
QL02p071550 Quercus lobata HOM05D003646 ORTHO05D004503 7.2e-13 77.4 63 60.3
FvH4_6g53430 Fragaria vesca HOM05D003646 ORTHO05D004503 9.4e-13 77.0 63 57.1
FAN14G4384 Fragaria x ananassa HOM05D003646 ORTHO05D004503 9.4e-13 77.0 63 57.1
Gohir.D09G036700 Gossypium hirsutum HOM05D003646 ORTHO05D004503 9.4e-13 77.0 63 60.3
Gorai.006G041700 Gossypium raimondii HOM05D003646 ORTHO05D004503 9.4e-13 77.0 63 60.3
RcHm_v2.0_Chr2g0175501 Rosa chinensis HOM05D003646 ORTHO05D004503 9.4e-13 77.0 63 58.7
Gohir.A09G035500 Gossypium hirsutum HOM05D003646 ORTHO05D004503 1.2e-12 76.6 63 58.7
TWI36G1744 Tripterygium wilfordii HOM05D003646 ORTHO05D004503 1.2e-12 76.6 63 55.6
Glyma.05G078300 Glycine max HOM05D003646 ORTHO05D004503 1.6e-12 76.3 50 64.0
Lalb_Chr14g0363371 Lupinus albus HOM05D003646 ORTHO05D004503 1.6e-12 76.3 63 57.1
Sopen02g038740 Solanum pennellii HOM05D003646 ORTHO05D004503 1.6e-12 76.3 63 58.7
COL.COLO4_17205 Corchorus olitorius HOM05D003646 ORTHO05D004503 2.1e-12 75.9 63 60.3
Duzib187G0941 Durio zibethinus HOM05D003646 ORTHO05D004503 2.1e-12 75.9 63 60.3
Eucgr.J02338 Eucalyptus grandis HOM05D003646 ORTHO05D004503 2.1e-12 75.9 63 55.6
MD09G1011300 Malus domestica HOM05D003646 ORTHO05D004503 2.1e-12 75.9 89 46.1
Manes.17G103400 Manihot esculenta HOM05D003646 ORTHO05D004503 2.1e-12 75.9 63 57.1
Phvul.004G054200 Phaseolus vulgaris HOM05D003646 ORTHO05D004503 2.1e-12 75.9 63 57.1
SMO145G0143 Selaginella moellendorffii HOM05D003646 ORTHO05D004503 2.1e-12 75.9 63 55.6
Solyc02g094120.3 Solanum lycopersicum HOM05D003646 ORTHO05D004503 2.1e-12 75.9 63 58.7
MSTRG.24091 Avicennia marina HOM05D003646 ORTHO05D004503 2.7e-12 75.5 63 55.6
Ca_04435_v3 Cicer arietinum L. HOM05D003646 ORTHO05D004503 2.7e-12 75.5 63 57.1
DCAR_021791 Daucus carota HOM05D003646 ORTHO05D004503 2.7e-12 75.5 63 58.7
Glyma.19G071800 Glycine max HOM05D003646 ORTHO05D004503 2.7e-12 75.5 88 46.6
Manes.15G160200 Manihot esculenta HOM05D003646 ORTHO05D004503 2.7e-12 75.5 63 55.6
Medtr6g023975 Medicago truncatula HOM05D003646 ORTHO05D004503 2.7e-12 75.5 63 57.1
Medtr7g033410 Medicago truncatula HOM05D003646 ORTHO05D004503 2.7e-12 75.5 63 57.1
Psat1g086840 Pisum sativum HOM05D003646 ORTHO05D004503 2.7e-12 75.5 63 57.1
Sed0021199 Sechium edule HOM05D003646 ORTHO05D004503 2.7e-12 75.5 63 57.1
TPR.G16204 Trifolium pratense HOM05D003646 ORTHO05D004503 2.7e-12 75.5 63 57.1
VMungo0464G0965 Vigna mungo HOM05D003646 ORTHO05D004503 2.7e-12 75.5 63 57.1
FAN02G3516 Fragaria x ananassa HOM05D003646 ORTHO05D004503 3.6e-12 75.1 63 55.6
Lj1g0013072 Lotus japonicus HOM05D003646 ORTHO05D004503 3.6e-12 75.1 63 55.6
Psat3g164760 Pisum sativum HOM05D003646 ORTHO05D004503 3.6e-12 75.1 63 57.1
TAR622G1416 Trochodendron aralioides HOM05D003646 ORTHO05D004503 3.6e-12 75.1 63 57.1
FvH4_6g53351 Fragaria vesca HOM05D003646 ORTHO05D004503 4.6e-12 74.7 41 70.7
Thecc.04G035300 Theobroma cacao HOM05D003646 ORTHO05D004503 6.1e-12 74.3 63 57.1
TPR.G38353 Trifolium pratense HOM05D003646 ORTHO05D004503 6.1e-12 74.3 41 70.7
Actinidia04439 Actinidia chinensis HOM05D003646 ORTHO05D004503 7.9e-12 73.9 57 59.6
PGSC0003DMG400020212 Solanum tuberosum HOM05D003646 ORTHO05D004503 7.9e-12 73.9 63 57.1
Actinidia30882 Actinidia chinensis HOM05D003646 ORTHO05D004503 1.0e-11 73.6 57 57.9
Dinv33343 Davidia involucrata HOM05D003646 ORTHO05D004503 1.0e-11 73.6 41 70.7
Duzib147G0655 Durio zibethinus HOM05D003646 ORTHO05D004503 1.0e-11 73.6 63 57.1
Aa31LG5G11030 Aethionema arabicum HOM05D003646 ORTHO05D004503 1.4e-11 73.2 63 57.1
PGR083G0278 Punica granatum HOM05D003646 ORTHO05D004503 1.4e-11 73.2 57 61.4
Sc03g0006580 Simmondsia chinensis HOM05D003646 ORTHO05D004503 1.4e-11 73.2 63 57.1
BraA06t24320Z Brassica rapa HOM05D003646 ORTHO05D004503 1.8e-11 72.8 63 55.6
CANSAT64G2942 Cannabis sativa HOM05D003646 ORTHO05D004503 1.8e-11 72.8 63 55.6
Thhalv10022262m.g Eutrema salsugineum HOM05D003646 ORTHO05D004503 1.8e-11 72.8 63 55.6
Potri.001G330900 Populus trichocarpa HOM05D003646 ORTHO05D004503 1.8e-11 72.8 63 55.6
Aqoxy5G03396 Aquilegia oxysepala HOM05D003646 ORTHO05D004503 2.3e-11 72.4 63 57.1
BcaC05g25487 Brassica carinata HOM05D003646 ORTHO05D004503 2.3e-11 72.4 63 55.6
C05p13540 Brassica napus HOM05D003646 ORTHO05D004503 2.3e-11 72.4 63 55.6
BolC5t30091H Brassica oleracea HOM05D003646 ORTHO05D004503 2.3e-11 72.4 63 55.6
CiPaw.03G055000 Carya illinoinensis HOM05D003646 ORTHO05D004503 2.3e-11 72.4 63 54.0
AUR62003508 Chenopodium quinoa HOM05D003646 ORTHO05D004503 2.3e-11 72.4 63 55.6
Haze_14869 Corylus avellana HOM05D003646 ORTHO05D004503 2.3e-11 72.4 63 57.1
MELO3C004917.2 Cucumis melo HOM05D003646 ORTHO05D004503 2.3e-11 72.4 41 70.7
MELO3C008194.2 Cucumis melo HOM05D003646 ORTHO05D004503 2.3e-11 72.4 63 54.0
CsaV3_1G013880 Cucumis sativus L. HOM05D003646 ORTHO05D004503 2.3e-11 72.4 41 70.7
Lj7A608G42 Lonicera japonica HOM05D003646 ORTHO05D004503 2.3e-11 72.4 63 55.6
Os08g0530400 Oryza sativa ssp. japonica HOM05D003646 ORTHO05D004503 2.3e-11 72.4 63 54.0
RcHm_v2.0_Chr2g0136551 Rosa chinensis HOM05D003646 ORTHO05D004503 2.3e-11 72.4 41 70.7
Hund30535 Selenicereus undatus HOM05D003646 ORTHO05D004503 2.3e-11 72.4 63 52.4
Hund30536 Selenicereus undatus HOM05D003646 ORTHO05D004503 2.3e-11 72.4 63 52.4
Zm00001eb036560 Zea mays HOM05D003646 ORTHO05D004503 2.3e-11 72.4 63 55.6
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 3.0e-11 72.0 63 52.4
Hma1.2p1_0279F.1_g112713 Hydrangea macrophylla HOM05D003646 ORTHO05D004503 3.0e-11 72.0 68 51.5
Hma1.2p1_2636F.1_g325820 Hydrangea macrophylla HOM05D003646 ORTHO05D004503 3.0e-11 72.0 68 51.5
GSVIVG01033099001 Vitis vinifera HOM05D003646 ORTHO05D004503 3.0e-11 72.0 63 52.4
AL3G10220 Arabidopsis lyrata HOM05D003646 ORTHO05D004503 3.9e-11 71.6 63 54.0
AT3G01910 Arabidopsis thaliana HOM05D003646 ORTHO05D004503 3.9e-11 71.6 63 54.0
A06p11420 Brassica napus HOM05D003646 ORTHO05D004503 5.1e-11 71.2 63 54.0
Cpa.g.sc171.20 Carica papaya HOM05D003646 ORTHO05D004503 5.1e-11 71.2 63 55.6
ClCG03G002950 Citrullus lanatus HOM05D003646 ORTHO05D004503 5.1e-11 71.2 63 54.0
BcaC03g16939 Brassica carinata HOM05D003646 ORTHO05D004503 6.7e-11 70.9 63 54.0
C02p48410 Brassica napus HOM05D003646 ORTHO05D004503 6.7e-11 70.9 63 54.0
BolC2t10871H Brassica oleracea HOM05D003646 ORTHO05D004503 6.7e-11 70.9 63 54.0
CAN.G473.96 Capsicum annuum HOM05D003646 ORTHO05D004503 6.7e-11 70.9 57 57.9
Cfa007232 Carpinus fangiana HOM05D003646 ORTHO05D004503 6.7e-11 70.9 63 55.6
AUR62017819 Chenopodium quinoa HOM05D003646 ORTHO05D004503 6.7e-11 70.9 57 59.6
PSO017G2867 Papaver somniferum HOM05D003646 ORTHO05D004503 6.7e-11 70.9 63 54.0
PSO478G1257 Papaver somniferum HOM05D003646 ORTHO05D004503 6.7e-11 70.9 63 54.0
Sp3g00180 Schrenkiella parvula HOM05D003646 ORTHO05D004503 6.7e-11 70.9 63 54.0
THA.LOC104821116 Tarenaya hassleriana HOM05D003646 ORTHO05D004503 6.7e-11 70.9 63 55.6
ClCG11G007080 Citrullus lanatus HOM05D003646 ORTHO05D004503 8.8e-11 70.5 42 66.7
TAR374G0357 Trochodendron aralioides HOM05D003646 ORTHO05D004503 8.8e-11 70.5 63 52.4
HPP92_007003 Vanilla planifolia HOM05D003646 ORTHO05D004503 8.8e-11 70.5 63 52.4
Carub.0003s0017 Capsella rubella HOM05D003646 ORTHO05D004503 1.1e-10 70.1 63 54.0
CARHR075040 Cardamine hirsuta HOM05D003646 ORTHO05D004503 1.1e-10 70.1 63 54.0
Nn3g16489 Nelumbo nucifera HOM05D003646 ORTHO05D004503 1.1e-10 70.1 63 52.4
Oeu035221.1 Olea europaea HOM05D003646 ORTHO05D004503 1.1e-10 70.1 63 54.0
BcaC05g25479 Brassica carinata HOM05D003646 ORTHO05D004503 1.5e-10 69.7 63 52.4
A02p30850 Brassica napus HOM05D003646 ORTHO05D004503 1.5e-10 69.7 63 52.4
BraA02t08098Z Brassica rapa HOM05D003646 ORTHO05D004503 1.5e-10 69.7 63 52.4
Rhsim08G0043500 Rhododendron simsii HOM05D003646 ORTHO05D004503 1.5e-10 69.7 63 52.4
TWI56G0364 Tripterygium wilfordii HOM05D003646 ORTHO05D004503 1.5e-10 69.7 63 52.4
unitig_578.g15929 Utricularia gibba HOM05D003646 ORTHO05D004503 1.5e-10 69.7 63 54.0
Migut.K01461 Erythranthe guttata HOM05D003646 ORTHO05D004503 2.0e-10 69.3 63 54.0
HanXRQChr07g0198211 Helianthus annuus HOM05D003646 ORTHO05D004503 2.0e-10 69.3 63 54.0
SalBow7G3637 Salvia bowleyana HOM05D003646 ORTHO05D004503 2.0e-10 69.3 63 52.4
Nitab4.5_0002050g0110 Nicotiana tabacum HOM05D003646 ORTHO05D004503 2.5e-10 68.9 75 49.3
Oeu013941.2 Olea europaea HOM05D003646 ORTHO05D004503 3.3e-10 68.6 41 68.3
Sabra16G0211900 Salix brachista HOM05D003646 ORTHO05D004503 3.3e-10 68.6 63 52.4
SGA_v2.0_scaffold253G45201 Striga asiatica HOM05D003646 ORTHO05D004503 3.3e-10 68.6 63 52.4
Ah.03g147470 Amaranthus hybridus HOM05D003646 ORTHO05D004503 4.3e-10 68.2 63 52.4
CSS0009384 Camellia sinensis var. sinensis HOM05D003646 ORTHO05D004503 4.3e-10 68.2 63 47.6
CDE02G1734 Ceratophyllum demersum HOM05D003646 ORTHO05D004503 4.3e-10 68.2 63 54.0
Peaxi162Scf01327g00121 Petunia axillaris HOM05D003646 ORTHO05D004503 4.3e-10 68.2 40 70.0
vmacro18339 Vaccinium macrocarpon HOM05D003646 ORTHO05D004503 4.3e-10 68.2 63 52.4
ATR0561G114 Amborella trichopoda HOM05D003646 ORTHO05D004503 5.7e-10 67.8 65 50.8
CSS0046571 Camellia sinensis var. sinensis HOM05D003646 ORTHO05D004503 5.7e-10 67.8 63 50.8
SGA_v2.0_scaffold154G37169 Striga asiatica HOM05D003646 ORTHO05D004503 5.7e-10 67.8 57 52.6
Rhsim12G0099200 Rhododendron simsii HOM05D003646 ORTHO05D004503 7.4e-10 67.4 63 54.0
Cc07_g00790 Coffea canephora HOM05D003646 ORTHO05D004503 1.3e-09 66.6 63 50.8
Gohir.A07G227900 Gossypium hirsutum HOM05D003646 ORTHO05D004503 1.3e-09 66.6 40 67.5
Gorai.001G270800 Gossypium raimondii HOM05D003646 ORTHO05D004503 1.3e-09 66.6 41 65.9
MD16G1118100 Malus domestica HOM05D003646 ORTHO05D004503 1.3e-09 66.6 63 52.4
Pp3c4_10110 Physcomitrium patens HOM05D003646 ORTHO05D004503 1.3e-09 66.6 68 45.6
AagrBONN_evm.TU.Sc2ySwM_228.2970 Anthoceros agrestis HOM05D003646 ORTHO05D004503 1.7e-09 66.2 63 44.4
ECA238G3019 Erigeron canadensis HOM05D003646 ORTHO05D004503 1.7e-09 66.2 63 52.4
QL03p053648 Quercus lobata HOM05D003646 ORTHO05D004503 1.7e-09 66.2 63 50.8
CSS0031819 Camellia sinensis var. sinensis HOM05D003646 ORTHO05D004503 2.2e-09 65.9 63 49.2
Gohir.D07G235000 Gossypium hirsutum HOM05D003646 ORTHO05D004503 2.2e-09 65.9 63 52.4
HanXRQChr14g0450741 Helianthus annuus HOM05D003646 ORTHO05D004503 2.2e-09 65.9 63 52.4
Mapoly0004s0050 Marchantia polymorpha HOM05D003646 ORTHO05D004503 2.2e-09 65.9 63 49.2
CDE05G3065 Ceratophyllum demersum HOM05D003646 ORTHO05D004503 2.8e-09 65.5 63 54.0
Prupe.1G227000 Prunus persica HOM05D003646 ORTHO05D004503 2.8e-09 65.5 63 50.8
SalBow4G1548 Salvia bowleyana HOM05D003646 ORTHO05D004503 2.8e-09 65.5 63 50.8
EL10Ac6g15361 Beta vulgaris HOM05D003646 ORTHO05D004503 3.7e-09 65.1 63 47.6
FvH4_4g23890 Fragaria vesca HOM05D003646 ORTHO05D004503 3.7e-09 65.1 63 50.8
FAN07G1027 Fragaria x ananassa HOM05D003646 ORTHO05D004503 3.7e-09 65.1 63 50.8
FAN12G1917 Fragaria x ananassa HOM05D003646 ORTHO05D004503 3.7e-09 65.1 63 50.8
FAN17G0152 Fragaria x ananassa HOM05D003646 ORTHO05D004503 3.7e-09 65.1 63 50.8
SHI03945 Sapria himalayana HOM05D000105 ORTHO05D000023 3.7e-09 65.1 63 52.4
FAN12G1434 Fragaria x ananassa HOM05D003646 ORTHO05D004503 4.8e-09 64.7 41 61.0
FvH4_4g22980 Fragaria vesca HOM05D003646 ORTHO05D004503 8.2e-09 63.9 41 61.0
Os12g0442800 Oryza sativa ssp. japonica HOM05D003646 ORTHO05D004503 1.1e-08 63.5 63 47.6
RcHm_v2.0_Chr3g0459691 Rosa chinensis HOM05D003646 ORTHO05D004503 1.4e-08 63.2 41 61.0
TPR.G11255 Trifolium pratense HOM05D003646 ORTHO05D004503 2.4e-08 62.4 41 58.5
CBR_g21855 Chara braunii HOM05D003646 ORTHO05D004503 6.9e-08 60.8 63 38.1
Lsat_1_v5_gn_2_92941 Lactuca sativa HOM05D003646 ORTHO05D004503 1.5e-07 59.7 63 52.4
MBI07_g34622_MAGBIO Magnolia biondii HOM05D003646 ORTHO05D004503 3.4e-07 58.5 91 37.4
Pp3c15_16350 Physcomitrium patens HOM05D003646 ORTHO05D004503 1.3e-06 56.6 68 39.7


User provided reference genes

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