Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 0.0e+00 1101.3 574 100.0
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 1.3e-225 786.6 515 77.9
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 7.3e-224 780.8 489 80.8
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 1.6e-223 779.6 543 73.7
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 2.8e-223 778.9 586 70.6
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 1.0e-222 776.9 543 73.7
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 3.0e-222 775.4 487 81.1
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 6.8e-222 774.2 511 77.1
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 8.9e-222 773.9 496 79.2
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 8.9e-222 773.9 506 77.7
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 8.9e-222 773.9 507 76.9
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 8.9e-222 773.9 507 76.9
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 1.2e-221 773.5 506 77.7
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 1.2e-221 773.5 489 80.0
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 2.0e-221 772.7 507 76.9
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 2.6e-221 772.3 502 78.1
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 3.4e-221 771.9 571 71.1
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 9.8e-221 770.4 498 79.1
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 9.8e-221 770.4 496 79.0
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 9.8e-221 770.4 489 79.1
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 1.7e-220 769.6 534 74.5
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 1.7e-220 769.6 502 77.3
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 2.2e-220 769.2 489 78.9
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 3.7e-220 768.5 506 77.9
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 4.9e-220 768.1 502 77.7
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 4.9e-220 768.1 501 78.8
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 8.3e-220 767.3 494 79.1
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 8.3e-220 767.3 502 78.7
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 1.8e-219 766.1 506 77.5
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 2.4e-219 765.8 530 74.3
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 3.2e-219 765.4 503 77.1
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 5.4e-219 764.6 489 79.3
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 5.4e-219 764.6 501 77.0
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 7.0e-219 764.2 566 69.6
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 9.2e-219 763.8 488 78.9
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 1.2e-218 763.5 486 79.6
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 5.9e-218 761.1 507 76.1
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 7.8e-218 760.8 489 79.3
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 7.8e-218 760.8 520 75.0
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 1.3e-217 760.0 489 78.3
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 2.3e-217 759.2 569 69.2
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 2.3e-217 759.2 501 76.2
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 2.3e-217 759.2 502 76.9
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 3.0e-217 758.8 496 76.8
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 3.9e-217 758.4 569 68.9
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 3.9e-217 758.4 495 78.4
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 3.9e-217 758.4 489 77.3
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 6.6e-217 757.7 489 78.5
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 6.6e-217 757.7 494 76.9
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 8.6e-217 757.3 503 77.5
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 8.6e-217 757.3 489 77.7
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 8.6e-217 757.3 489 77.5
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 8.6e-217 757.3 530 74.3
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 1.5e-216 756.5 527 73.6
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 2.5e-216 755.7 489 77.5
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 3.3e-216 755.4 487 78.9
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 4.3e-216 755.0 528 73.5
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 7.3e-216 754.2 502 75.9
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 1.6e-215 753.1 528 73.5
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 2.8e-215 752.3 520 74.2
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 3.6e-215 751.9 570 67.5
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 3.6e-215 751.9 570 67.7
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 3.6e-215 751.9 520 74.2
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 4.7e-215 751.5 488 77.7
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 6.2e-215 751.1 574 67.2
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 6.2e-215 751.1 489 79.1
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 8.0e-215 750.7 520 74.8
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 1.0e-214 750.4 575 67.5
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 1.0e-214 750.4 502 76.5
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 1.4e-214 750.0 516 74.6
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 1.4e-214 750.0 496 76.0
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 1.4e-214 750.0 507 75.9
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 1.8e-214 749.6 574 67.2
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 2.3e-214 749.2 497 77.3
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 3.1e-214 748.8 571 68.0
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 1.2e-213 746.9 501 75.6
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.0e-213 746.1 544 72.6
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 3.4e-213 745.3 540 72.4
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 7.5e-213 744.2 528 71.6
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 7.5e-213 744.2 487 77.2
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 7.5e-213 744.2 519 73.8
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 2.2e-212 742.7 497 74.6
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 2.9e-212 742.3 524 71.0
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 3.7e-212 741.9 482 77.8
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 8.3e-212 740.7 501 74.7
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 3.2e-211 738.8 518 73.4
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 4.1e-211 738.4 528 72.9
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 5.4e-211 738.0 488 74.6
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 5.4e-211 738.0 526 72.8
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 2.0e-210 736.1 516 71.5
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 1.0e-209 733.8 500 73.6
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 6.6e-209 731.1 524 69.8
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 1.1e-208 730.3 463 80.3
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 1.5e-208 729.9 515 70.9
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 9.5e-208 727.2 511 74.4
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 1.2e-207 726.9 453 80.8
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 1.2e-207 726.9 495 75.8
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 6.2e-207 724.5 490 75.1
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 8.9e-206 720.7 493 76.7
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.7e-204 716.5 486 75.7
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 2.2e-204 716.1 490 74.5
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 1.2e-202 710.3 507 71.8
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 4.6e-202 708.4 465 77.4
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 2.3e-201 706.1 494 73.7
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 6.6e-201 704.5 497 73.6
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 6.2e-199 698.0 433 82.4
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 8.1e-199 697.6 465 75.5
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 3.2e-195 685.6 436 79.8
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 2.8e-191 672.5 436 78.7
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 1.4e-190 670.2 485 70.9
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 4.3e-184 648.7 417 78.7
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 1.3e-183 647.1 433 77.4
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 6.9e-182 641.3 655 55.7
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 9.0e-182 641.0 505 66.7
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 1.5e-176 623.6 410 79.3
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.3e-175 620.5 510 64.5
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 6.2e-175 618.2 437 73.5
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.3e-172 610.5 394 79.9
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 8.7e-169 597.8 420 74.3
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 6.2e-167 591.7 395 75.4
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 1.7e-164 583.6 427 70.0
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 4.6e-162 575.5 389 75.6
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 1.0e-161 574.3 421 70.5
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 2.4e-158 563.1 425 67.8
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 2.3e-153 546.6 361 76.2
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 5.5e-147 525.4 573 52.2
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 2.3e-145 520.0 467 61.2
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 2.2e-143 513.5 502 58.8
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 3.1e-134 483.0 440 61.8
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 9.1e-134 481.5 314 75.8
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 2.7e-125 453.4 303 76.9
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 1.3e-124 451.1 354 64.1
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 4.2e-123 446.0 524 48.7
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 1.8e-121 440.7 293 75.8
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 5.7e-120 435.6 360 66.4
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 2.4e-110 403.7 259 78.8
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 5.4e-110 402.5 269 74.3
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 9.2e-110 401.7 282 73.0
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 2.7e-109 400.2 264 77.3
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 4.6e-85 319.7 213 77.0
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 2.4e-73 280.8 473 40.4
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 3.2e-70 270.4 248 60.5
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 1.3e-68 265.0 186 69.9
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 2.6e-64 250.8 493 36.9
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 5.1e-60 236.5 176 72.2
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 2.1e-58 231.1 164 70.7
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 7.6e-56 222.6 193 59.1
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 2.4e-49 201.1 144 72.9
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 5.7e-43 179.9 116 78.4
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 7.6e-40 169.5 125 68.0
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 4.8e-34 150.2 117 66.7
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 5.3e-33 146.7 96 76.0
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 7.7e-32 142.9 91 74.7
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 1.0e-31 142.5 109 72.5
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 2.0e-27 128.3 156 51.3
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 5.3e-25 120.2 95 66.3
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 1.3e-23 115.5 78 78.2
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 1.7e-23 115.2 90 64.4
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 1.7e-23 115.2 69 84.1
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 4.7e-21 107.1 79 65.8
arahy.Tifrunner.gnm1.ann1.38IWEY Arachis hypogaea HOM05D004179 ORTHO05D005248 1.3e-18 99.0 61 75.4
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 2.2e-18 98.2 68 73.5
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 1.0e-15 89.4 53 84.9
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 2.3e-12 78.2 140 36.4
HanXRQChr04g0106691 Helianthus annuus HOM05D004179 ORTHO05D020814 2.6e-11 74.7 53 67.9
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 1.1e-09 69.3 93 45.2
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 1.4e-09 68.9 58 62.1
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 1.6e-08 65.5 46 76.1
VMungo0720G0416 Vigna mungo HOM05D004179 ORTHO05D020814 2.5e-06 58.2 56 48.2
VMungo1215G0907 Vigna mungo HOM05D004179 ORTHO05D020814 7.2e-06 56.6 56 48.2


User provided reference genes

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