Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 7.9e-67 256.9 125 100.0
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 8.3e-16 87.4 91 50.5
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 6.0e-14 81.3 52 65.4
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 6.0e-14 81.3 52 65.4
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 7.8e-14 80.9 82 52.4
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 1.0e-13 80.5 69 53.6
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 1.0e-13 80.5 69 53.6
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.3e-13 80.1 52 65.4
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.3e-13 80.1 52 65.4
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 1.3e-13 80.1 79 50.6
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 1.7e-13 79.7 48 64.6
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 1.7e-13 79.7 48 68.8
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 3.0e-13 79.0 48 68.8
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 3.0e-13 79.0 49 65.3
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 3.0e-13 79.0 49 65.3
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 3.9e-13 78.6 51 62.7
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 3.9e-13 78.6 51 62.7
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 5.1e-13 78.2 52 63.5
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 5.1e-13 78.2 48 66.7
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 5.1e-13 78.2 48 62.5
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 5.1e-13 78.2 48 62.5
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 5.1e-13 78.2 53 67.9
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 6.6e-13 77.8 48 66.7
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 6.6e-13 77.8 48 66.7
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 6.6e-13 77.8 48 66.7
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 6.6e-13 77.8 48 66.7
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 6.6e-13 77.8 48 66.7
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 6.6e-13 77.8 48 66.7
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 6.6e-13 77.8 47 68.1
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 8.6e-13 77.4 48 64.6
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 8.6e-13 77.4 48 64.6
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 8.6e-13 77.4 48 64.6
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 8.6e-13 77.4 48 66.7
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 8.6e-13 77.4 48 66.7
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 8.6e-13 77.4 48 66.7
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 8.6e-13 77.4 48 66.7
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 1.1e-12 77.0 48 64.6
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 1.1e-12 77.0 53 58.5
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 1.1e-12 77.0 48 66.7
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 1.5e-12 76.6 51 60.8
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 1.5e-12 76.6 48 64.6
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 1.5e-12 76.6 65 52.3
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 1.5e-12 76.6 48 64.6
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 1.5e-12 76.6 49 63.3
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 1.5e-12 76.6 47 68.1
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 1.9e-12 76.3 48 64.6
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 1.9e-12 76.3 48 64.6
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 1.9e-12 76.3 48 64.6
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 2.5e-12 75.9 47 66.0
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 2.5e-12 75.9 49 63.3
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 3.3e-12 75.5 51 58.8
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 4.3e-12 75.1 54 57.4
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 4.3e-12 75.1 51 58.8
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 4.3e-12 75.1 47 66.0
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 4.3e-12 75.1 48 62.5
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 4.3e-12 75.1 48 62.5
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 4.3e-12 75.1 48 62.5
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 4.3e-12 75.1 48 62.5
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 4.3e-12 75.1 58 60.3
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 4.3e-12 75.1 48 62.5
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 4.3e-12 75.1 58 60.3
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 4.3e-12 75.1 59 59.3
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 4.3e-12 75.1 48 62.5
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 5.6e-12 74.7 49 61.2
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 5.6e-12 74.7 48 62.5
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 5.6e-12 74.7 47 63.8
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 5.6e-12 74.7 47 63.8
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 5.6e-12 74.7 44 68.2
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 5.6e-12 74.7 47 61.7
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 7.3e-12 74.3 47 63.8
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 7.3e-12 74.3 47 63.8
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 7.3e-12 74.3 48 62.5
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 7.3e-12 74.3 48 62.5
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 7.3e-12 74.3 48 62.5
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 7.3e-12 74.3 47 66.0
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 7.3e-12 74.3 47 66.0
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 9.5e-12 73.9 48 60.4
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 9.5e-12 73.9 48 60.4
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 9.5e-12 73.9 48 62.5
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 9.5e-12 73.9 48 60.4
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 9.5e-12 73.9 48 60.4
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 9.5e-12 73.9 48 62.5
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 9.5e-12 73.9 47 61.7
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 1.2e-11 73.6 48 62.5
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 1.2e-11 73.6 47 63.8
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 1.2e-11 73.6 48 62.5
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 1.2e-11 73.6 48 60.4
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 1.6e-11 73.2 47 61.7
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 1.6e-11 73.2 47 63.8
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 2.1e-11 72.8 48 58.3
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 2.1e-11 72.8 48 58.3
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 2.1e-11 72.8 48 58.3
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 2.1e-11 72.8 47 63.8
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 2.1e-11 72.8 60 55.0
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 2.1e-11 72.8 48 60.4
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 2.1e-11 72.8 47 61.7
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 2.8e-11 72.4 46 67.4
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 2.8e-11 72.4 47 61.7
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 2.8e-11 72.4 48 60.4
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 3.6e-11 72.0 48 58.3
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 4.7e-11 71.6 48 64.6
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 4.7e-11 71.6 46 65.2
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 4.7e-11 71.6 46 65.2
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 4.7e-11 71.6 47 61.7
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 4.7e-11 71.6 48 56.2
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 4.7e-11 71.6 46 65.2
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 8.1e-11 70.9 47 59.6
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 1.4e-10 70.1 85 44.7
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 4.0e-10 68.6 48 60.4
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 5.2e-10 68.2 42 66.7
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 6.8e-10 67.8 48 58.3
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 2.9e-08 62.4 46 56.5


User provided reference genes

Program Settings