Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.3e-119 433.3 255 100.0
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 6.3e-111 404.4 255 91.8
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 8.4e-39 164.9 137 65.7
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 1.9e-38 163.7 137 65.0
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 3.2e-38 162.9 137 65.7
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 3.2e-38 162.9 137 65.7
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 3.2e-38 162.9 137 65.0
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 3.2e-38 162.9 137 66.4
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 4.2e-38 162.5 137 65.0
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 4.2e-38 162.5 137 65.0
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 4.2e-38 162.5 137 65.0
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 4.2e-38 162.5 137 65.0
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 4.2e-38 162.5 137 65.0
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 4.2e-38 162.5 137 65.0
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 5.4e-38 162.2 137 66.4
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 7.1e-38 161.8 137 65.7
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 7.1e-38 161.8 137 65.7
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 9.3e-38 161.4 137 65.0
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 9.3e-38 161.4 137 65.0
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 1.2e-37 161.0 140 64.3
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 1.2e-37 161.0 137 64.2
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 1.6e-37 160.6 137 65.0
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 1.6e-37 160.6 137 65.0
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 1.6e-37 160.6 137 63.5
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 1.6e-37 160.6 137 63.5
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 1.6e-37 160.6 136 65.4
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.6e-37 160.6 137 63.5
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 2.1e-37 160.2 137 65.7
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 2.1e-37 160.2 137 65.0
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 2.1e-37 160.2 137 64.2
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 2.1e-37 160.2 137 63.5
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 2.1e-37 160.2 136 63.2
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 2.1e-37 160.2 137 64.2
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 2.7e-37 159.8 137 64.2
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 2.7e-37 159.8 137 64.2
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 3.5e-37 159.5 137 65.7
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 3.5e-37 159.5 137 62.8
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 3.5e-37 159.5 137 62.8
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 3.5e-37 159.5 137 64.2
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 3.5e-37 159.5 137 63.5
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 3.5e-37 159.5 137 63.5
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 4.6e-37 159.1 137 65.0
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 4.6e-37 159.1 137 64.2
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 6.0e-37 158.7 137 64.2
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 6.0e-37 158.7 137 65.7
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 6.0e-37 158.7 137 63.5
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 6.0e-37 158.7 137 63.5
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 6.0e-37 158.7 137 62.8
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 7.8e-37 158.3 137 62.0
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 7.8e-37 158.3 137 63.5
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 7.8e-37 158.3 137 62.0
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 1.0e-36 157.9 137 62.0
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 1.0e-36 157.9 137 62.8
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 1.0e-36 157.9 137 62.8
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 1.0e-36 157.9 137 64.2
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 1.0e-36 157.9 136 64.0
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 1.3e-36 157.5 137 63.5
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 1.3e-36 157.5 137 65.7
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 1.3e-36 157.5 137 62.8
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 1.7e-36 157.1 137 63.5
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 1.7e-36 157.1 137 64.2
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 1.7e-36 157.1 137 62.8
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 2.3e-36 156.8 137 65.7
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 2.3e-36 156.8 137 63.5
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 3.0e-36 156.4 137 65.7
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 3.0e-36 156.4 137 65.0
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 3.0e-36 156.4 135 65.2
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 3.0e-36 156.4 137 63.5
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 3.9e-36 156.0 137 62.8
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 3.9e-36 156.0 137 61.3
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 3.9e-36 156.0 137 62.8
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 3.9e-36 156.0 137 62.8
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 5.1e-36 155.6 137 65.7
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 6.6e-36 155.2 137 61.3
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 6.6e-36 155.2 137 64.2
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 6.6e-36 155.2 137 62.8
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 8.7e-36 154.8 139 63.3
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 8.7e-36 154.8 137 62.8
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 8.7e-36 154.8 137 62.8
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 8.7e-36 154.8 137 65.0
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 1.1e-35 154.5 137 63.5
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 1.1e-35 154.5 137 62.0
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 1.5e-35 154.1 137 62.0
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 1.5e-35 154.1 137 62.8
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 1.5e-35 154.1 137 62.0
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 1.5e-35 154.1 137 65.0
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 1.9e-35 153.7 137 62.8
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 1.9e-35 153.7 139 64.7
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 2.5e-35 153.3 137 62.0
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 3.3e-35 152.9 137 61.3
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 3.3e-35 152.9 137 61.3
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 3.3e-35 152.9 137 62.8
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 4.3e-35 152.5 137 62.8
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 4.3e-35 152.5 137 62.0
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 4.3e-35 152.5 137 62.8
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 7.3e-35 151.8 139 62.6
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 9.6e-35 151.4 139 62.6
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 9.6e-35 151.4 137 63.5
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 9.6e-35 151.4 137 61.3
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 9.6e-35 151.4 136 62.5
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 9.6e-35 151.4 137 63.5
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 1.3e-34 151.0 139 61.9
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 5.3e-33 145.6 137 57.7
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 1.2e-32 144.4 137 59.1
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 1.5e-32 144.1 137 59.1
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 1.3e-31 141.0 137 59.9
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 5.4e-30 135.6 149 55.7
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 5.4e-30 135.6 98 70.4
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 1.6e-29 134.0 99 70.7
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 1.6e-29 134.0 98 68.4
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 4.3e-27 125.9 108 61.1
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 4.0e-25 119.4 139 52.5
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 4.0e-25 119.4 142 50.0
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 2.0e-24 117.1 150 49.3
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 2.2e-23 113.6 96 64.6
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 4.9e-23 112.5 96 63.5
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 6.0e-21 105.5 82 67.1
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 3.1e-17 93.2 72 65.3
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 5.3e-17 92.4 134 45.5
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 1.0e-15 88.2 130 43.8
SEGI_21530 Sequoiadendron giganteum HOM05D002771 ORTHO05D007106 3.8e-15 86.3 41 95.1
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 9.3e-14 81.6 130 41.5
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 4.6e-13 79.3 130 40.8
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 6.0e-13 79.0 73 52.1
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 7.4e-11 72.0 67 61.2
SEGI_03008 Sequoiadendron giganteum HOM05D002176 ORTHO05D015764 1.6e-10 70.9 78 65.4
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 3.7e-10 69.7 56 66.1
SEGI_24148 Sequoiadendron giganteum HOM05D000793 ORTHO05D000783 1.0e-07 61.6 41 73.2
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 9.3e-06 55.1 42 66.7
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 9.3e-06 55.1 44 63.6
SEGI_04134 Sequoiadendron giganteum HOM05D000005 ORTHO05D000239 9.3e-06 55.1 36 69.4


User provided reference genes

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