Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_32564 Sequoiadendron giganteum HOM05D004685 ORTHO05D005412 8.0e-92 340.5 183 100.0
MBI07_g02901_MAGBIO Magnolia biondii HOM05D004685 ORTHO05D005412 1.4e-19 100.5 141 50.4
ATR0743G201 Amborella trichopoda HOM05D004685 ORTHO05D005412 2.6e-18 96.3 149 49.0
CAN.G31.7 Capsicum annuum HOM05D004685 ORTHO05D005412 3.2e-16 89.4 143 46.2
Solyc11g005010.3 Solanum lycopersicum HOM05D004685 ORTHO05D005412 3.2e-16 89.4 160 43.8
Manes.04G048500 Manihot esculenta HOM05D004685 ORTHO05D005412 4.2e-16 89.0 136 44.1
Nn1g09723 Nelumbo nucifera HOM05D004685 ORTHO05D005412 9.3e-16 87.8 161 40.4
TWI63G0381 Tripterygium wilfordii HOM05D004685 ORTHO05D005412 9.3e-16 87.8 136 44.9
Sopen11g001030 Solanum pennellii HOM05D004685 ORTHO05D005412 1.2e-15 87.4 160 43.1
Potri.007G134200 Populus trichocarpa HOM05D004685 ORTHO05D005412 1.6e-15 87.0 130 47.7
Manes.11G127300 Manihot esculenta HOM05D004685 ORTHO05D005412 2.7e-15 86.3 149 38.9
COL.COLO4_28386 Corchorus olitorius HOM05D004685 ORTHO05D005412 3.5e-15 85.9 136 43.4
Duzib212G0895 Durio zibethinus HOM05D004685 ORTHO05D005412 3.5e-15 85.9 136 44.1
Nitab4.5_0004047g0070 Nicotiana tabacum HOM05D004685 ORTHO05D005412 3.5e-15 85.9 143 45.5
Aqoxy2G04150 Aquilegia oxysepala HOM05D004685 ORTHO05D005412 4.6e-15 85.5 163 42.3
Rhsim09G0013500 Rhododendron simsii HOM05D004685 ORTHO05D005412 1.8e-14 83.6 141 45.4
Gorai.005G125700 Gossypium raimondii HOM05D004685 ORTHO05D005412 3.0e-14 82.8 143 42.7
Duzib268G0117 Durio zibethinus HOM05D004685 ORTHO05D005412 3.9e-14 82.4 143 44.8
Glyma.12G049600 Glycine max HOM05D004685 ORTHO05D005412 5.1e-14 82.0 141 41.8
TWI38G2236 Tripterygium wilfordii HOM05D004685 ORTHO05D005412 5.1e-14 82.0 136 43.4
Glyma.11G125000 Glycine max HOM05D004685 ORTHO05D005412 6.7e-14 81.6 141 42.6
Haze_01415 Corylus avellana HOM05D004685 ORTHO05D005412 8.7e-14 81.3 142 43.7
Gohir.A02G092700 Gossypium hirsutum HOM05D004685 ORTHO05D005412 8.7e-14 81.3 143 42.7
Gohir.D02G110800 Gossypium hirsutum HOM05D004685 ORTHO05D005412 8.7e-14 81.3 143 42.7
Sabra07G0108900 Salix brachista HOM05D004685 ORTHO05D005412 8.7e-14 81.3 161 44.7
Cfa015223 Carpinus fangiana HOM05D004685 ORTHO05D005412 1.9e-13 80.1 142 43.0
PSO017G4600 Papaver somniferum HOM05D004685 ORTHO05D005412 3.3e-13 79.3 139 46.0
Sc13g0007990 Simmondsia chinensis HOM05D004685 ORTHO05D005412 3.3e-13 79.3 139 40.3
Phvul.011G051800 Phaseolus vulgaris HOM05D004685 ORTHO05D005412 4.3e-13 79.0 167 38.9
CANSAT54G0526 Cannabis sativa HOM05D004685 ORTHO05D005412 5.7e-13 78.6 143 41.3
GSVIVG01038095001 Vitis vinifera HOM05D004685 ORTHO05D005412 5.7e-13 78.6 158 38.6
Glyma.13G346500 Glycine max HOM05D004685 ORTHO05D005412 7.4e-13 78.2 127 44.1
CSS0040744 Camellia sinensis var. sinensis HOM05D004685 ORTHO05D005412 9.7e-13 77.8 158 39.9
Oeu015936.3 Olea europaea HOM05D004685 ORTHO05D005412 9.7e-13 77.8 161 39.1
Thecc.04G171300 Theobroma cacao HOM05D004685 ORTHO05D005412 9.7e-13 77.8 139 42.4
Duzib151G0372 Durio zibethinus HOM05D004685 ORTHO05D005412 1.3e-12 77.4 139 41.7
vmacro21333 Vaccinium macrocarpon HOM05D004685 ORTHO05D005412 1.3e-12 77.4 123 45.5
Cpa.g.sc9.333 Carica papaya HOM05D004685 ORTHO05D005412 1.6e-12 77.0 162 39.5
Glyma.15G027700 Glycine max HOM05D004685 ORTHO05D005412 1.6e-12 77.0 127 43.3
Cc03_g11850 Coffea canephora HOM05D004685 ORTHO05D005412 2.2e-12 76.6 166 38.0
COL.COLO4_04541 Corchorus olitorius HOM05D001857 ORTHO05D006687 2.2e-12 76.6 138 42.0
PSO675G3484 Papaver somniferum HOM05D004685 ORTHO05D005412 2.2e-12 76.6 139 44.6
Medtr4g068180 Medicago truncatula HOM05D004685 ORTHO05D005412 8.2e-12 74.7 129 41.9
Os09g0515800 Oryza sativa ssp. japonica HOM05D004685 ORTHO05D005412 8.2e-12 74.7 146 38.4
Atru.chr4.1348 Acer truncatum HOM05D004685 ORTHO05D005412 1.4e-11 73.9 144 41.7
Migut.N03084 Erythranthe guttata HOM05D004685 ORTHO05D005412 1.4e-11 73.9 164 40.2
Prupe.4G179600 Prunus persica HOM05D004685 ORTHO05D005412 1.4e-11 73.9 163 38.7
Actinidia34572 Actinidia chinensis HOM05D004685 ORTHO05D005412 1.8e-11 73.6 145 42.1
QL10p052572 Quercus lobata HOM05D004685 ORTHO05D005412 1.8e-11 73.6 149 38.9
HPP92_012799 Vanilla planifolia HOM05D004685 ORTHO05D005412 1.8e-11 73.6 149 38.9
VMungo1127G1426 Vigna mungo HOM05D004685 ORTHO05D005412 1.8e-11 73.6 149 39.6
EL10Ac3g06030 Beta vulgaris HOM05D004685 ORTHO05D005412 2.4e-11 73.2 132 43.2
TPR.G34220 Trifolium pratense HOM05D004685 ORTHO05D005412 2.4e-11 73.2 131 39.7
Gohir.A10G141300 Gossypium hirsutum HOM05D004685 ORTHO05D005412 4.1e-11 72.4 156 38.5
Gohir.D10G125600 Gossypium hirsutum HOM05D004685 ORTHO05D005412 4.1e-11 72.4 134 42.5
Gorai.011G138600 Gossypium raimondii HOM05D004685 ORTHO05D005412 4.1e-11 72.4 134 42.5
Migut.G01286 Erythranthe guttata HOM05D004685 ORTHO05D005412 5.3e-11 72.0 163 38.7
Psat7g208360 Pisum sativum HOM05D004685 ORTHO05D005412 9.0e-11 71.2 143 39.9
TPR.G6599 Trifolium pratense HOM05D004685 ORTHO05D005412 9.0e-11 71.2 127 41.7
AagrBONN_evm.TU.Sc2ySwM_362.1685 Anthoceros agrestis HOM05D004685 ORTHO05D005412 1.2e-10 70.9 155 38.7
CiPaw.01G173200 Carya illinoinensis HOM05D004685 ORTHO05D005412 1.2e-10 70.9 164 36.0
AUR62002365 Chenopodium quinoa HOM05D004685 ORTHO05D005412 2.0e-10 70.1 138 41.3
Ca_01238_v3 Cicer arietinum L. HOM05D004685 ORTHO05D005412 2.0e-10 70.1 127 43.3
Phvul.005G155500 Phaseolus vulgaris HOM05D004685 ORTHO05D005412 2.0e-10 70.1 145 39.3
CDE04G1604 Ceratophyllum demersum HOM05D004685 ORTHO05D005412 2.6e-10 69.7 163 35.0
Prupe.1G201500 Prunus persica HOM05D004685 ORTHO05D005412 2.6e-10 69.7 162 38.9
Sed0003070 Sechium edule HOM05D004685 ORTHO05D005412 4.5e-10 68.9 129 42.6
DCAR_005442 Daucus carota HOM05D004685 ORTHO05D005412 1.0e-09 67.8 149 38.9
Eucgr.A00035 Eucalyptus grandis HOM05D004685 ORTHO05D005412 1.0e-09 67.8 127 40.2
FAN25G3192 Fragaria x ananassa HOM05D004685 ORTHO05D005412 1.3e-09 67.4 162 37.0
Medtr2g099380 Medicago truncatula HOM05D004685 ORTHO05D005412 1.7e-09 67.0 139 38.1
PGR014G0004 Punica granatum HOM05D004685 ORTHO05D005412 1.7e-09 67.0 139 36.7
PGR083G2412 Punica granatum HOM05D004685 ORTHO05D005412 1.7e-09 67.0 139 36.7
arahy.Tifrunner.gnm1.ann1.YPS1PN Arachis hypogaea HOM05D004685 ORTHO05D005412 2.2e-09 66.6 146 39.0
Lj3g0020450 Lotus japonicus HOM05D004685 ORTHO05D005412 2.2e-09 66.6 143 38.5
MD04G1046900 Malus domestica HOM05D004685 ORTHO05D005412 2.2e-09 66.6 153 37.3
SalBow6G3785 Salvia bowleyana HOM05D004685 ORTHO05D005412 2.2e-09 66.6 161 36.6
Sed0022333 Sechium edule HOM05D004685 ORTHO05D005412 2.2e-09 66.6 129 42.6
AUR62023820 Chenopodium quinoa HOM05D004685 ORTHO05D005412 2.9e-09 66.2 138 40.6
ClCG07G015070 Citrullus lanatus HOM05D004685 ORTHO05D005412 2.9e-09 66.2 156 39.7
arahy.Tifrunner.gnm1.ann1.D04CBC Arachis hypogaea HOM05D004685 ORTHO05D005412 3.8e-09 65.9 146 39.0
arahy.Tifrunner.gnm1.ann1.H82CQV Arachis hypogaea HOM05D004685 ORTHO05D005412 3.8e-09 65.9 141 38.3
FAN11G3422 Fragaria x ananassa HOM05D004685 ORTHO05D005412 5.0e-09 65.5 162 37.0
FAN16G2549 Fragaria x ananassa HOM05D004685 ORTHO05D005412 5.0e-09 65.5 142 41.5
FAN21G0673 Fragaria x ananassa HOM05D004685 ORTHO05D005412 5.0e-09 65.5 162 37.0
MD11G1250200 Malus domestica HOM05D004685 ORTHO05D005412 8.5e-09 64.7 166 38.0
arahy.Tifrunner.gnm1.ann1.0IGH5Q Arachis hypogaea HOM05D004685 ORTHO05D005412 1.4e-08 63.9 141 38.3
Ciclev10020095m.g Citrus clementina HOM05D004685 ORTHO05D005412 1.9e-08 63.5 129 38.8
MELO3C017779.2 Cucumis melo HOM05D004685 ORTHO05D005412 1.9e-08 63.5 129 40.3
Mapoly0111s0053 Marchantia polymorpha HOM05D004685 ORTHO05D005412 1.9e-08 63.5 156 38.5
RcHm_v2.0_Chr5g0033161 Rosa chinensis HOM05D004685 ORTHO05D005412 1.9e-08 63.5 160 36.9
CiPaw.02G103100 Carya illinoinensis HOM05D004685 ORTHO05D005412 3.2e-08 62.8 160 34.4
Lalb_Chr14g0372611 Lupinus albus HOM05D004685 ORTHO05D005412 3.2e-08 62.8 151 38.4
Zm00001eb191360 Zea mays HOM05D004685 ORTHO05D005412 3.2e-08 62.8 149 36.9
Lsat_1_v5_gn_3_104860 Lactuca sativa HOM05D004685 ORTHO05D005412 5.5e-08 62.0 168 36.9
MD03G1229700 Malus domestica HOM05D004685 ORTHO05D005412 5.5e-08 62.0 161 37.3
Hund12396 Selenicereus undatus HOM05D004685 ORTHO05D005412 5.5e-08 62.0 141 42.6
CsaV3_4G002620 Cucumis sativus L. HOM05D004685 ORTHO05D005412 7.2e-08 61.6 127 40.2
VMungo1080G1803 Vigna mungo HOM05D004685 ORTHO05D005412 1.2e-07 60.8 144 37.5
SGA_v2.0_scaffold25G10992 Striga asiatica HOM05D004685 ORTHO05D005412 1.6e-07 60.5 149 36.9
TAR362G0066 Trochodendron aralioides HOM05D004685 ORTHO05D005412 2.7e-07 59.7 141 36.9
A04p23420 Brassica napus HOM05D004685 ORTHO05D005412 3.6e-07 59.3 164 35.4
C04p59720 Brassica napus HOM05D004685 ORTHO05D005412 3.6e-07 59.3 164 35.4
HanXRQChr14g0433711 Helianthus annuus HOM05D004685 ORTHO05D005412 4.6e-07 58.9 168 33.9
Lalb_Chr24g0396631 Lupinus albus HOM05D004685 ORTHO05D005412 6.1e-07 58.5 140 36.4
Thhalv10016666m.g Eutrema salsugineum HOM05D004685 ORTHO05D005412 7.9e-07 58.2 144 38.9
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 1.8e-06 57.0 143 37.1
BraA04t17869Z Brassica rapa HOM05D004685 ORTHO05D005412 1.8e-06 57.0 164 34.8
Carub.0004s1189 Capsella rubella HOM05D004685 ORTHO05D005412 1.8e-06 57.0 139 38.1
AL4G25610 Arabidopsis lyrata HOM05D004685 ORTHO05D005412 2.3e-06 56.6 143 37.1
AT2G30710 Arabidopsis thaliana HOM05D004685 ORTHO05D005412 3.0e-06 56.2 143 37.1
Lalb_Chr22g0352021 Lupinus albus HOM05D004685 ORTHO05D005412 3.9e-06 55.8 127 36.2
Sp4g13230 Schrenkiella parvula HOM05D004685 ORTHO05D005412 3.9e-06 55.8 144 37.5
THA.LOC104815520 Tarenaya hassleriana HOM05D004685 ORTHO05D005412 3.9e-06 55.8 141 35.5
BolC4t27480H Brassica oleracea HOM05D002568 ORTHO05D005412 6.7e-06 55.1 149 35.6


User provided reference genes

Program Settings