Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_32352 Sequoiadendron giganteum HOM05D003380 ORTHO05D018146 2.5e-59 231.9 115 100.0
CiPaw.08G021300 Carya illinoinensis HOM05D003380 ORTHO05D004232 5.5e-22 107.8 70 77.1
GSVIVG01035567001 Vitis vinifera HOM05D003380 ORTHO05D004232 1.6e-21 106.3 70 77.1
Hund19388 Selenicereus undatus HOM05D003380 ORTHO05D004232 2.7e-21 105.5 69 78.3
MD08G1124600 Malus domestica HOM05D003380 ORTHO05D004232 3.5e-21 105.1 70 78.6
Cfa013309 Carpinus fangiana HOM05D003380 ORTHO05D004232 4.6e-21 104.8 70 77.1
Duzib168G0804 Durio zibethinus HOM05D003380 ORTHO05D004232 4.6e-21 104.8 70 77.1
CiPaw.07G209900 Carya illinoinensis HOM05D003380 ORTHO05D004232 6.1e-21 104.4 70 77.1
DCAR_000674 Daucus carota HOM05D003380 ORTHO05D004232 6.1e-21 104.4 70 77.1
DCAR_004564 Daucus carota HOM05D003380 ORTHO05D004232 6.1e-21 104.4 70 77.1
Duzib150G0262 Durio zibethinus HOM05D003380 ORTHO05D004232 6.1e-21 104.4 70 75.7
MBI13_g34299_MAGBIO Magnolia biondii HOM05D003380 ORTHO05D004232 6.1e-21 104.4 70 77.1
COL.COLO4_18628 Corchorus olitorius HOM05D003380 ORTHO05D004232 7.9e-21 104.0 69 78.3
Thecc.09G002600 Theobroma cacao HOM05D003380 ORTHO05D004232 7.9e-21 104.0 70 75.7
Cfa010143 Carpinus fangiana HOM05D003380 ORTHO05D004232 1.0e-20 103.6 70 75.7
Haze_21791 Corylus avellana HOM05D003380 ORTHO05D004232 1.3e-20 103.2 70 75.7
Manes.03G001100 Manihot esculenta HOM05D003380 ORTHO05D004232 1.3e-20 103.2 70 75.7
CANSAT25G3289 Cannabis sativa HOM05D003380 ORTHO05D004232 1.8e-20 102.8 69 75.4
Eucgr.C02133 Eucalyptus grandis HOM05D003380 ORTHO05D004232 1.8e-20 102.8 67 79.1
MD15G1103300 Malus domestica HOM05D003380 ORTHO05D004232 1.8e-20 102.8 68 77.9
QL12p025844 Quercus lobata HOM05D003380 ORTHO05D004232 1.8e-20 102.8 69 75.4
Sc06g0001250 Simmondsia chinensis HOM05D003380 ORTHO05D004232 1.8e-20 102.8 67 79.1
THA.LOC104803586 Tarenaya hassleriana HOM05D003380 ORTHO05D004232 1.8e-20 102.8 67 79.1
THA.LOC104819924 Tarenaya hassleriana HOM05D003380 ORTHO05D004232 1.8e-20 102.8 67 79.1
Cpa.g.sc148.3 Carica papaya HOM05D003380 ORTHO05D004232 2.3e-20 102.4 70 75.7
HanXRQChr03g0067311 Helianthus annuus HOM05D003380 ORTHO05D004232 2.3e-20 102.4 57 86.0
Lalb_Chr08g0243471 Lupinus albus HOM05D003380 ORTHO05D004232 2.3e-20 102.4 67 76.1
Gohir.A13G181700 Gossypium hirsutum HOM05D003380 ORTHO05D004232 3.0e-20 102.1 70 75.7
MELO3C000704.2 Cucumis melo HOM05D003380 ORTHO05D018146 3.9e-20 101.7 70 75.7
Rhsim01G0218400 Rhododendron simsii HOM05D003380 ORTHO05D004232 3.9e-20 101.7 67 76.1
Sed0022704 Sechium edule HOM05D003380 ORTHO05D004232 3.9e-20 101.7 70 75.7
TWI63G0177 Tripterygium wilfordii HOM05D003380 ORTHO05D004232 3.9e-20 101.7 70 72.9
Prupe.1G456200 Prunus persica HOM05D003380 ORTHO05D004232 5.1e-20 101.3 69 75.4
Hund03262 Selenicereus undatus HOM05D003380 ORTHO05D004232 5.1e-20 101.3 70 75.7
TWI34G1105 Tripterygium wilfordii HOM05D003380 ORTHO05D004232 5.1e-20 101.3 70 72.9
Gohir.D05G068600 Gossypium hirsutum HOM05D003380 ORTHO05D004232 6.7e-20 100.9 70 74.3
Gorai.009G069600 Gossypium raimondii HOM05D003380 ORTHO05D004232 6.7e-20 100.9 70 74.3
Sp7g29150 Schrenkiella parvula HOM05D003380 ORTHO05D004232 6.7e-20 100.9 67 79.1
TAR383G0138 Trochodendron aralioides HOM05D003380 ORTHO05D004232 6.7e-20 100.9 67 76.1
TAR636G3035 Trochodendron aralioides HOM05D003380 ORTHO05D004232 6.7e-20 100.9 57 86.0
Aa31LG2G19070 Aethionema arabicum HOM05D003380 ORTHO05D004232 8.7e-20 100.5 66 80.3
CANSAT64G1923 Cannabis sativa HOM05D003380 ORTHO05D018146 8.7e-20 100.5 69 73.9
ClCG08G012530 Citrullus lanatus HOM05D003380 ORTHO05D004232 8.7e-20 100.5 70 74.3
CsaV3_2G031230 Cucumis sativus L. HOM05D003380 ORTHO05D004232 8.7e-20 100.5 70 74.3
Gohir.D13G185700 Gossypium hirsutum HOM05D003380 ORTHO05D004232 8.7e-20 100.5 70 75.7
Gorai.013G211700 Gossypium raimondii HOM05D003380 ORTHO05D004232 8.7e-20 100.5 70 75.7
RhsimUnG0051400 Rhododendron simsii HOM05D003380 ORTHO05D004232 8.7e-20 100.5 67 76.1
Actinidia02482 Actinidia chinensis HOM05D003380 ORTHO05D004232 1.1e-19 100.1 67 76.1
arahy.Tifrunner.gnm1.ann1.21Q806 Arachis hypogaea HOM05D003380 ORTHO05D004232 1.1e-19 100.1 67 77.6
arahy.Tifrunner.gnm1.ann1.AGKE2S Arachis hypogaea HOM05D003380 ORTHO05D004232 1.1e-19 100.1 67 77.6
A03p60610 Brassica napus HOM05D003380 ORTHO05D004232 1.1e-19 100.1 70 75.7
C07p58510 Brassica napus HOM05D003380 ORTHO05D004232 1.1e-19 100.1 70 75.7
BraA03t15102Z Brassica rapa HOM05D003380 ORTHO05D004232 1.1e-19 100.1 70 75.7
ECA240G0102 Erigeron canadensis HOM05D003380 ORTHO05D004232 1.1e-19 100.1 70 72.9
Hma1.2p1_0443F.1_g154000 Hydrangea macrophylla HOM05D003380 ORTHO05D004232 1.1e-19 100.1 70 75.7
Lj1g0002632 Lotus japonicus HOM05D003380 ORTHO05D004232 1.1e-19 100.1 67 77.6
Lalb_Chr23g0269261 Lupinus albus HOM05D003380 ORTHO05D004232 1.1e-19 100.1 67 77.6
Sed0024231 Sechium edule HOM05D003380 ORTHO05D004232 1.1e-19 100.1 70 72.9
CARHR239170 Cardamine hirsuta HOM05D003380 ORTHO05D004232 1.5e-19 99.8 63 79.4
vmacro15777 Vaccinium macrocarpon HOM05D003380 ORTHO05D004232 1.5e-19 99.8 57 84.2
AL7G20780 Arabidopsis lyrata HOM05D003380 ORTHO05D004232 1.9e-19 99.4 67 77.6
AT4G31300 Arabidopsis thaliana HOM05D003380 ORTHO05D004232 1.9e-19 99.4 67 77.6
BcaB03g12688 Brassica carinata HOM05D003380 ORTHO05D004232 1.9e-19 99.4 67 77.6
BcaC01g01103 Brassica carinata HOM05D003380 ORTHO05D004232 1.9e-19 99.4 67 77.6
BcaC09g51907 Brassica carinata HOM05D003380 ORTHO05D004232 1.9e-19 99.4 67 77.6
BcaNung05317 Brassica carinata HOM05D003380 ORTHO05D004232 1.9e-19 99.4 67 77.6
A01p07000 Brassica napus HOM05D003380 ORTHO05D004232 1.9e-19 99.4 67 77.6
A08p18700 Brassica napus HOM05D003380 ORTHO05D004232 1.9e-19 99.4 67 77.6
C01p07730 Brassica napus HOM05D003380 ORTHO05D004232 1.9e-19 99.4 67 77.6
C03p88100 Brassica napus HOM05D003380 ORTHO05D004232 1.9e-19 99.4 67 77.6
BolC1t00756H Brassica oleracea HOM05D003380 ORTHO05D004232 1.9e-19 99.4 67 77.6
BolC3t21119H Brassica oleracea HOM05D003380 ORTHO05D004232 1.9e-19 99.4 67 77.6
BraA01t00651Z Brassica rapa HOM05D003380 ORTHO05D004232 1.9e-19 99.4 67 77.6
BraA08t33831Z Brassica rapa HOM05D003380 ORTHO05D004232 1.9e-19 99.4 67 77.6
Carub.0007s0926 Capsella rubella HOM05D003380 ORTHO05D004232 1.9e-19 99.4 67 77.6
Thhalv10026126m.g Eutrema salsugineum HOM05D003380 ORTHO05D004232 1.9e-19 99.4 67 77.6
FvH4_2g36480 Fragaria vesca HOM05D003380 ORTHO05D004232 1.9e-19 99.4 57 86.0
FAN15G0754 Fragaria x ananassa HOM05D003380 ORTHO05D004232 1.9e-19 99.4 57 86.0
FAN20G0682 Fragaria x ananassa HOM05D003380 ORTHO05D004232 1.9e-19 99.4 57 86.0
Nn1g03129 Nelumbo nucifera HOM05D003380 ORTHO05D004232 1.9e-19 99.4 57 84.2
Nn3g19887 Nelumbo nucifera HOM05D003380 ORTHO05D004232 1.9e-19 99.4 57 84.2
Rhsim03G0268700 Rhododendron simsii HOM05D003380 ORTHO05D004232 1.9e-19 99.4 57 82.5
Ah.09g234230 Amaranthus hybridus HOM05D003380 ORTHO05D004232 2.5e-19 99.0 63 77.8
Dinv12605 Davidia involucrata HOM05D003380 ORTHO05D004232 2.5e-19 99.0 67 76.1
Lsat_1_v5_gn_5_56460 Lactuca sativa HOM05D003380 ORTHO05D004232 2.5e-19 99.0 67 74.6
PSO170G5091 Papaver somniferum HOM05D003380 ORTHO05D004232 2.5e-19 99.0 70 74.3
PSO210G2204 Papaver somniferum HOM05D003380 ORTHO05D004232 2.5e-19 99.0 70 74.3
Actinidia38523 Actinidia chinensis HOM05D003380 ORTHO05D004232 3.3e-19 98.6 68 73.5
Ca_15639_v3 Cicer arietinum L. HOM05D003380 ORTHO05D004232 3.3e-19 98.6 69 72.5
Medtr3g109210 Medicago truncatula HOM05D003380 ORTHO05D004232 3.3e-19 98.6 67 74.6
TPR.G12492 Trifolium pratense HOM05D003380 ORTHO05D004232 3.3e-19 98.6 69 72.5
Ciclev10009349m.g Citrus clementina HOM05D003380 ORTHO05D004232 4.3e-19 98.2 70 72.9
HanXRQChr03g0081271 Helianthus annuus HOM05D003380 ORTHO05D004232 4.3e-19 98.2 67 74.6
MD13G1234400 Malus domestica HOM05D003380 ORTHO05D004232 4.3e-19 98.2 57 82.5
Phvul.009G103400 Phaseolus vulgaris HOM05D003380 ORTHO05D004232 4.3e-19 98.2 67 76.1
Prupe.1G065200 Prunus persica HOM05D003380 ORTHO05D004232 4.3e-19 98.2 57 82.5
VMungo1309G0072 Vigna mungo HOM05D003380 ORTHO05D004232 4.3e-19 98.2 67 77.6
GSVIVG01032253001 Vitis vinifera HOM05D003380 ORTHO05D004232 5.7e-19 97.8 67 74.6
FvH4_7g10810 Fragaria vesca HOM05D003380 ORTHO05D004232 7.4e-19 97.4 57 84.2
FAN03G3318 Fragaria x ananassa HOM05D003380 ORTHO05D004232 7.4e-19 97.4 57 84.2
Glyma.04G077400 Glycine max HOM05D003380 ORTHO05D004232 7.4e-19 97.4 67 76.1
TAR383G1016 Trochodendron aralioides HOM05D003380 ORTHO05D004232 7.4e-19 97.4 67 74.6
Glyma.06G078500 Glycine max HOM05D003380 ORTHO05D004232 9.7e-19 97.1 55 83.6
Gohir.A05G066200 Gossypium hirsutum HOM05D003380 ORTHO05D004232 9.7e-19 97.1 70 71.4
Oeu021030.1 Olea europaea HOM05D003380 ORTHO05D004232 9.7e-19 97.1 70 74.3
QL01p024860 Quercus lobata HOM05D003380 ORTHO05D018146 9.7e-19 97.1 69 72.5
Nitab4.5_0000899g0140 Nicotiana tabacum HOM05D003380 ORTHO05D004232 1.6e-18 96.3 67 74.6
Nitab4.5_0001535g0020 Nicotiana tabacum HOM05D003380 ORTHO05D004232 1.6e-18 96.3 67 74.6
Atru.chr7.2688 Acer truncatum HOM05D003380 ORTHO05D018146 2.2e-18 95.9 94 54.3
Dinv26471 Davidia involucrata HOM05D003380 ORTHO05D004232 2.2e-18 95.9 67 74.6
FAN06G1260 Fragaria x ananassa HOM05D003380 ORTHO05D004232 2.2e-18 95.9 57 82.5
FAN06G5002 Fragaria x ananassa HOM05D003380 ORTHO05D004232 2.2e-18 95.9 57 82.5
Psat5g024560 Pisum sativum HOM05D003380 ORTHO05D004232 2.2e-18 95.9 69 71.0
Migut.L01915 Erythranthe guttata HOM05D003380 ORTHO05D004232 2.8e-18 95.5 67 73.1
Atru.chr13.1615 Acer truncatum HOM05D003380 ORTHO05D004232 3.7e-18 95.1 70 71.4
Atru.chr7.2666 Acer truncatum HOM05D003380 ORTHO05D004232 3.7e-18 95.1 70 71.4
Atru.chr7.2690 Acer truncatum HOM05D003380 ORTHO05D004232 3.7e-18 95.1 70 71.4
Oeu036948.2 Olea europaea HOM05D003380 ORTHO05D004232 3.7e-18 95.1 57 82.5
SalBow6G4635 Salvia bowleyana HOM05D003380 ORTHO05D004232 3.7e-18 95.1 67 73.1
AUR62020647 Chenopodium quinoa HOM05D003380 ORTHO05D004232 4.8e-18 94.7 66 74.2
AUR62038728 Chenopodium quinoa HOM05D003380 ORTHO05D004232 4.8e-18 94.7 66 74.2
unitig_578.g16397 Utricularia gibba HOM05D003380 ORTHO05D004232 4.8e-18 94.7 67 74.6
CAN.G228.7 Capsicum annuum HOM05D003380 ORTHO05D004232 6.3e-18 94.4 67 73.1
MD16G1239000 Malus domestica HOM05D003380 ORTHO05D004232 6.3e-18 94.4 57 78.9
PGR044G1928 Punica granatum HOM05D003380 ORTHO05D004232 6.3e-18 94.4 70 70.0
RcHm_v2.0_Chr6g0305401 Rosa chinensis HOM05D003380 ORTHO05D004232 6.3e-18 94.4 57 82.5
CSS0000176 Camellia sinensis var. sinensis HOM05D003380 ORTHO05D004232 8.2e-18 94.0 57 80.7
Peaxi162Scf00320g00122 Petunia axillaris HOM05D003380 ORTHO05D004232 1.1e-17 93.6 67 73.1
MSTRG.10467 Avicennia marina HOM05D003380 ORTHO05D004232 1.4e-17 93.2 67 71.6
Lj4A319G22 Lonicera japonica HOM05D003380 ORTHO05D004232 1.4e-17 93.2 57 80.7
Zm00001eb270240 Zea mays HOM05D003380 ORTHO05D004232 1.4e-17 93.2 57 77.2
Zm00001eb377530 Zea mays HOM05D003380 ORTHO05D004232 1.4e-17 93.2 57 77.2
Aqoxy7G02672 Aquilegia oxysepala HOM05D003380 ORTHO05D004232 1.8e-17 92.8 57 77.2
BolC7t46306H Brassica oleracea HOM05D003380 ORTHO05D004232 2.4e-17 92.4 79 67.1
Potri.006G077900 Populus trichocarpa HOM05D003380 ORTHO05D004232 2.4e-17 92.4 67 71.6
Sopen07g005910 Solanum pennellii HOM05D003380 ORTHO05D004232 2.4e-17 92.4 67 71.6
PGSC0003DMG400009772 Solanum tuberosum HOM05D003380 ORTHO05D004232 2.4e-17 92.4 67 71.6
HPP92_004718 Vanilla planifolia HOM05D003380 ORTHO05D004232 2.4e-17 92.4 70 70.0
Solyc07g016200.3 Solanum lycopersicum HOM05D003380 ORTHO05D004232 3.1e-17 92.0 67 70.1
Cc00_g00190 Coffea canephora HOM05D003380 ORTHO05D004232 4.1e-17 91.7 57 78.9
Migut.J00835 Erythranthe guttata HOM05D003380 ORTHO05D004232 4.1e-17 91.7 67 70.1
Os06g0139900 Oryza sativa ssp. japonica HOM05D003380 ORTHO05D004232 5.3e-17 91.3 57 75.4
Potri.018G145900 Populus trichocarpa HOM05D003380 ORTHO05D004232 6.9e-17 90.9 67 70.1
Sabra18G0120300 Salix brachista HOM05D003380 ORTHO05D004232 6.9e-17 90.9 67 70.1
Sabra18G0127800 Salix brachista HOM05D003380 ORTHO05D004232 6.9e-17 90.9 67 70.1
Sabra06G0058900 Salix brachista HOM05D003380 ORTHO05D004232 9.0e-17 90.5 67 70.1
SGA_v2.0_scaffold21G09610 Striga asiatica HOM05D003380 ORTHO05D004232 9.0e-17 90.5 61 72.1
ATR0626G170 Amborella trichopoda HOM05D003380 ORTHO05D004232 1.5e-16 89.7 64 75.0
Lj6C279G2 Lonicera japonica HOM05D003380 ORTHO05D004232 2.6e-16 89.0 57 77.2
Os02g0770000 Oryza sativa ssp. japonica HOM05D003380 ORTHO05D004232 2.6e-16 89.0 57 75.4
CAN.G106.10 Capsicum annuum HOM05D003380 ORTHO05D004232 3.4e-16 88.6 67 70.1
Nitab4.5_0000404g0220 Nicotiana tabacum HOM05D003380 ORTHO05D004232 5.9e-16 87.8 57 77.2
Nitab4.5_0007423g0010 Nicotiana tabacum HOM05D003380 ORTHO05D004232 5.9e-16 87.8 57 77.2
SGA_v2.0_scaffold450G51802 Striga asiatica HOM05D003380 ORTHO05D004232 1.7e-15 86.3 61 68.9
Mapoly0016s0041 Marchantia polymorpha HOM05D003380 ORTHO05D004232 6.5e-15 84.3 55 72.7
PGSC0003DMG400013685 Solanum tuberosum HOM05D003380 ORTHO05D004232 6.5e-15 84.3 57 75.4
Lj6A275T62 Lonicera japonica HOM05D003380 ORTHO05D004232 1.1e-14 83.6 53 77.4
ATR0796G318 Amborella trichopoda HOM05D003380 ORTHO05D018146 1.9e-14 82.8 68 63.2
AagrBONN_evm.TU.Sc2ySwM_228.613 Anthoceros agrestis HOM05D003380 ORTHO05D004232 1.9e-14 82.8 65 64.6
EL10Ac2g03687 Beta vulgaris HOM05D003380 ORTHO05D004232 4.2e-14 81.6 65 66.2
Pp3c18_17380 Physcomitrium patens HOM05D003380 ORTHO05D004232 7.2e-14 80.9 52 75.0
A05p03280 Brassica napus HOM05D003380 ORTHO05D018146 3.6e-13 78.6 57 71.9
BraA05t19317Z Brassica rapa HOM05D003380 ORTHO05D018146 3.6e-13 78.6 57 71.9
SMO117G0031 Selaginella moellendorffii HOM05D003380 ORTHO05D004232 5.1e-12 74.7 50 70.0
CBR_g55787 Chara braunii HOM05D003380 ORTHO05D004232 3.8e-07 58.5 53 52.8
Atru.chr1.909 Acer truncatum HOM05D003380 ORTHO05D004232 4.2e-06 55.1 36 75.0


User provided reference genes

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