Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_32331 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 8.2e-91 337.0 169 100.0
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 4.8e-67 258.1 129 100.0
Dinv17619 Davidia involucrata HOM05D003933 ORTHO05D004746 8.9e-21 104.4 115 49.6
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 5.8e-20 101.7 108 51.9
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 1.3e-19 100.5 108 51.9
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 8.3e-19 97.8 110 51.8
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 1.1e-18 97.4 103 51.5
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 1.4e-18 97.1 102 48.0
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 1.4e-18 97.1 114 51.8
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 1.4e-18 97.1 108 48.1
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 1.9e-18 96.7 116 49.1
CDE08G1244 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 1.9e-18 96.7 111 48.6
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 1.9e-18 96.7 105 51.4
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 3.2e-18 95.9 114 48.2
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 3.2e-18 95.9 114 51.8
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 4.1e-18 95.5 116 46.6
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 4.1e-18 95.5 116 46.6
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 5.4e-18 95.1 115 47.8
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 5.4e-18 95.1 120 46.7
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 7.0e-18 94.7 116 46.6
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 7.0e-18 94.7 110 48.2
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 7.0e-18 94.7 109 47.7
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 7.0e-18 94.7 116 46.6
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 9.2e-18 94.4 113 46.0
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 1.2e-17 94.0 101 52.5
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 1.2e-17 94.0 113 46.9
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 1.6e-17 93.6 120 40.8
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 1.6e-17 93.6 110 50.0
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 2.7e-17 92.8 110 46.4
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 2.7e-17 92.8 110 50.9
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 3.5e-17 92.4 110 45.5
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 4.6e-17 92.0 120 40.8
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 4.6e-17 92.0 107 48.6
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 4.6e-17 92.0 109 49.5
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 4.6e-17 92.0 109 49.5
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 6.0e-17 91.7 113 47.8
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 6.0e-17 91.7 113 45.1
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 6.0e-17 91.7 108 48.1
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 7.8e-17 91.3 107 47.7
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 1.0e-16 90.9 113 44.2
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 1.0e-16 90.9 110 48.2
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 1.3e-16 90.5 120 45.0
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 1.3e-16 90.5 107 45.8
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 1.7e-16 90.1 99 51.5
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 1.7e-16 90.1 100 52.0
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 2.3e-16 89.7 105 49.5
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 2.3e-16 89.7 106 45.3
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 2.3e-16 89.7 107 46.7
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 2.3e-16 89.7 120 39.2
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 3.0e-16 89.4 116 47.4
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 3.0e-16 89.4 114 42.1
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 3.0e-16 89.4 112 47.3
Oeu044350.1 Olea europaea HOM05D003933 ORTHO05D004746 3.0e-16 89.4 112 46.4
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 3.0e-16 89.4 107 47.7
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 3.9e-16 89.0 110 47.3
Nn7g37760 Nelumbo nucifera HOM05D003933 ORTHO05D004746 3.9e-16 89.0 120 42.5
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 5.1e-16 88.6 110 44.5
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 5.1e-16 88.6 114 46.5
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 6.6e-16 88.2 117 43.6
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 6.6e-16 88.2 112 46.4
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 8.6e-16 87.8 115 43.5
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 8.6e-16 87.8 105 48.6
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 8.6e-16 87.8 114 50.0
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 8.6e-16 87.8 100 50.0
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 1.1e-15 87.4 121 43.8
Sc10g0005100 Simmondsia chinensis HOM05D003933 ORTHO05D004746 1.1e-15 87.4 127 43.3
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 1.5e-15 87.0 114 45.6
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.5e-15 87.0 108 46.3
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 1.5e-15 87.0 101 47.5
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 1.5e-15 87.0 112 46.4
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 1.5e-15 87.0 109 45.9
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 1.9e-15 86.7 113 41.6
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 1.9e-15 86.7 111 46.8
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 1.9e-15 86.7 115 43.5
HPP92_008573 Vanilla planifolia HOM05D003933 ORTHO05D004746 1.9e-15 86.7 106 45.3
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 3.3e-15 85.9 117 40.2
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 4.3e-15 85.5 99 47.5
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 4.3e-15 85.5 120 43.3
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 4.3e-15 85.5 116 44.8
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 9.5e-15 84.3 111 44.1
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 9.5e-15 84.3 101 49.5
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 9.5e-15 84.3 103 48.5
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 9.5e-15 84.3 114 45.6
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 9.5e-15 84.3 116 44.8
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 1.2e-14 84.0 108 47.2
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.6e-14 83.6 108 44.4
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 2.1e-14 83.2 109 45.0
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 2.8e-14 82.8 110 45.5
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 2.8e-14 82.8 108 45.4
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 2.8e-14 82.8 107 43.9
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 3.6e-14 82.4 120 37.5
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 3.6e-14 82.4 120 37.5
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 3.6e-14 82.4 100 42.0
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 3.6e-14 82.4 121 43.0
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 3.6e-14 82.4 121 43.0
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 4.7e-14 82.0 98 49.0
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 6.2e-14 81.6 98 43.9
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 6.2e-14 81.6 103 43.7
Sp6g34690 Schrenkiella parvula HOM05D003933 ORTHO05D004746 6.2e-14 81.6 108 39.8
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 8.1e-14 81.3 100 41.0
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 8.1e-14 81.3 104 45.2
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 8.1e-14 81.3 108 45.4
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 1.4e-13 80.5 97 47.4
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 1.4e-13 80.5 106 44.3
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 2.3e-13 79.7 111 44.1
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 2.3e-13 79.7 103 43.7
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 2.3e-13 79.7 112 43.8
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 3.1e-13 79.3 95 43.2
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 1.5e-12 77.0 83 48.2
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.5e-12 77.0 95 48.4
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 2.6e-12 76.3 98 39.8
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 2.6e-12 76.3 95 47.4
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 2.6e-12 76.3 95 47.4
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 4.4e-12 75.5 93 40.9
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 4.4e-12 75.5 93 40.9
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 5.8e-12 75.1 71 53.5
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 3.7e-11 72.4 114 40.4
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 3.7e-11 72.4 94 39.4
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 3.7e-11 72.4 71 53.5
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 4.9e-11 72.0 91 45.1
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 1.1e-10 70.9 78 42.3
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 1.1e-10 70.9 78 42.3
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 2.4e-10 69.7 83 43.4
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 3.2e-10 69.3 102 41.2
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 3.2e-10 69.3 78 41.0
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 4.1e-10 68.9 114 38.6
Pp3c10_5850 Physcomitrium patens HOM05D003933 ORTHO05D004746 4.1e-10 68.9 116 36.2
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 9.2e-10 67.8 96 42.7
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 9.2e-10 67.8 129 38.0
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 1.6e-09 67.0 124 37.1
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 2.1e-09 66.6 83 42.2
MBI06_g42297_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 2.7e-09 66.2 91 45.1
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 2.7e-09 66.2 89 47.2
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 1.3e-08 63.9 98 41.8
Sed0007936 Sechium edule HOM05D003933 ORTHO05D004746 1.6e-06 57.0 108 36.1
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 2.1e-06 56.6 69 49.3
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 3.6e-06 55.8 71 38.0
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 6.2e-06 55.1 68 41.2
FAN17G2963 Fragaria x ananassa HOM05D003933 ORTHO05D004746 6.2e-06 55.1 81 40.7


User provided reference genes

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