Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 2.9e-182 641.7 313 100.0
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 2.5e-125 452.6 231 93.9
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 5.2e-107 391.7 308 61.0
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 8.8e-107 391.0 309 62.5
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 2.0e-106 389.8 308 60.4
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 4.8e-105 385.2 335 57.9
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 6.3e-105 384.8 312 60.3
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 3.1e-104 382.5 305 61.3
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 5.3e-104 381.7 308 63.0
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 9.1e-104 380.9 304 60.2
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 4.5e-103 378.6 322 58.1
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 5.9e-103 378.3 308 59.7
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 7.7e-103 377.9 305 60.3
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 7.7e-103 377.9 307 58.6
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 1.3e-102 377.1 323 57.3
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 1.3e-102 377.1 313 59.1
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 1.7e-102 376.7 305 59.7
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 2.2e-102 376.3 305 59.7
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 3.8e-102 375.6 306 61.4
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 6.5e-102 374.8 330 56.4
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 6.5e-102 374.8 309 58.9
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 8.5e-102 374.4 308 61.0
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 1.9e-101 373.2 316 59.8
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 1.9e-101 373.2 308 60.7
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 3.2e-101 372.5 314 58.3
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 4.2e-101 372.1 305 60.3
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 4.2e-101 372.1 308 58.8
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 7.2e-101 371.3 313 59.7
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 9.4e-101 370.9 311 59.8
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 9.4e-101 370.9 304 58.6
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 1.2e-100 370.5 311 56.3
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 2.1e-100 369.8 309 59.2
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 2.1e-100 369.8 311 58.8
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 3.6e-100 369.0 307 59.3
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 3.6e-100 369.0 309 59.5
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 3.6e-100 369.0 309 60.2
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 4.7e-100 368.6 310 59.4
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 8.0e-100 367.9 303 59.1
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 1.4e-99 367.1 336 57.1
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 1.4e-99 367.1 303 60.1
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 1.4e-99 367.1 298 60.7
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 1.4e-99 367.1 307 59.6
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 1.8e-99 366.7 314 58.0
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 1.8e-99 366.7 314 58.0
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 4.0e-99 365.5 305 58.7
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 6.8e-99 364.8 301 56.8
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 1.2e-98 364.0 297 60.9
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 1.2e-98 364.0 315 55.9
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 1.5e-98 363.6 301 56.8
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 2.0e-98 363.2 314 57.6
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 2.0e-98 363.2 318 57.2
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 3.4e-98 362.5 307 59.0
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 5.7e-98 361.7 303 59.7
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 5.7e-98 361.7 314 56.7
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 7.5e-98 361.3 308 58.4
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 7.5e-98 361.3 306 59.8
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 7.5e-98 361.3 300 58.7
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 7.5e-98 361.3 303 57.4
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 9.8e-98 360.9 308 60.1
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 9.8e-98 360.9 306 60.5
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 9.8e-98 360.9 304 57.2
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 9.8e-98 360.9 303 58.7
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 1.3e-97 360.5 312 59.3
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 1.3e-97 360.5 303 57.8
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 1.3e-97 360.5 303 57.8
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 1.3e-97 360.5 302 58.6
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 1.7e-97 360.1 309 57.6
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 1.7e-97 360.1 303 58.1
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 2.2e-97 359.8 308 56.2
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 2.2e-97 359.8 306 57.5
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 2.2e-97 359.8 307 59.3
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 2.8e-97 359.4 315 55.2
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 3.7e-97 359.0 312 56.7
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 6.3e-97 358.2 303 58.4
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 8.3e-97 357.8 307 56.7
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 1.4e-96 357.1 315 55.2
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 2.4e-96 356.3 308 58.8
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 2.4e-96 356.3 303 57.1
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 2.4e-96 356.3 307 57.7
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 2.4e-96 356.3 307 56.4
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 4.1e-96 355.5 307 59.3
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 4.1e-96 355.5 306 56.2
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 5.4e-96 355.1 309 58.6
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 5.4e-96 355.1 310 56.5
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 5.4e-96 355.1 308 59.7
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 9.1e-96 354.4 306 58.2
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 1.6e-95 353.6 307 59.3
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 2.0e-95 353.2 305 55.4
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 3.5e-95 352.4 303 57.4
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 3.5e-95 352.4 308 57.5
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 3.5e-95 352.4 307 57.7
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 4.5e-95 352.1 316 58.2
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 1.7e-94 350.1 313 58.1
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 2.3e-94 349.7 312 58.3
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 5.5e-93 345.1 307 55.7
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 1.2e-92 344.0 306 57.5
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 9.2e-88 327.8 351 49.6
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 3.8e-86 322.4 322 51.2
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 6.6e-86 321.6 310 52.9
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 5.6e-85 318.5 277 56.3
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 6.1e-84 315.1 374 46.3
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 8.3e-81 304.7 271 57.9
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 9.2e-80 301.2 278 56.8
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 1.5e-74 283.9 340 45.9
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 5.8e-74 282.0 297 50.5
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 1.3e-73 280.8 225 59.6
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 1.9e-72 276.9 231 60.6
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 3.5e-71 272.7 276 53.3
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 7.8e-71 271.6 229 59.8
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 1.5e-58 230.7 215 54.4
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 2.0e-58 230.3 173 61.8
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 3.9e-54 216.1 195 53.8
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 3.9e-54 216.1 205 53.2
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 4.0e-51 206.1 182 55.5
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 1.1e-45 188.0 286 40.9
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 3.4e-42 176.4 154 56.5
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 1.6e-36 157.5 310 31.9
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 4.9e-33 146.0 229 39.7
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.1e-32 144.8 175 45.7
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 1.6e-31 141.0 145 53.1
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 1.5e-29 134.4 156 46.8
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 5.8e-26 122.5 300 32.0
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 5.8e-26 122.5 125 52.0
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 3.2e-24 116.7 97 56.7
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 3.3e-21 106.7 121 51.2
arahy.Tifrunner.gnm1.ann1.M1HUIQ Arachis hypogaea HOM05D005470 ORTHO05D006855 4.5e-18 96.3 120 49.2
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 1.3e-17 94.7 168 37.5
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 6.1e-15 85.9 63 65.1
Nn1g07786 Nelumbo nucifera HOM05D005470 ORTHO05D006855 1.0e-14 85.1 80 51.2
FAN15G3610 Fragaria x ananassa HOM05D005470 ORTHO05D006855 8.8e-14 82.0 74 50.0
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 1.5e-13 81.3 115 40.0
COL.COLO4_06654 Corchorus olitorius HOM05D005470 ORTHO05D006855 7.4e-13 79.0 63 52.4
MD05G1178000 Malus domestica HOM05D005470 ORTHO05D006855 2.4e-11 73.9 61 55.7
CAN.G122.7 Capsicum annuum HOM05D005470 ORTHO05D006855 5.3e-11 72.8 99 40.4
Atru.chr5.2015 Acer truncatum HOM05D005470 ORTHO05D006855 7.7e-10 68.9 81 50.6
arahy.Tifrunner.gnm1.ann1.GL96XS Arachis hypogaea HOM05D005470 ORTHO05D006855 1.3e-09 68.2 88 43.2
MELO3C014350.2 Cucumis melo HOM05D005470 ORTHO05D006855 3.2e-08 63.5 60 50.0
CSS0038259 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 7.9e-07 58.9 89 41.6
arahy.Tifrunner.gnm1.ann1.HRPB72 Arachis hypogaea HOM05D005470 ORTHO05D006855 1.4e-06 58.2 83 41.0


User provided reference genes

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