Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_32055 Sequoiadendron giganteum HOM05D001081 ORTHO05D050959 3.0e-142 508.4 251 100.0
SEGI_32374 Sequoiadendron giganteum HOM05D001081 ORTHO05D050959 4.0e-41 172.6 106 78.3
Lj1C1018T17 Lonicera japonica HOM05D001081 ORTHO05D004708 2.2e-15 87.0 169 30.2
Cfa016233 Carpinus fangiana HOM05D001081 ORTHO05D004708 8.3e-15 85.1 116 39.7
CSS0032097 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D004708 2.4e-14 83.6 117 38.5
CARHR189240 Cardamine hirsuta HOM05D001081 ORTHO05D004708 5.4e-14 82.4 117 36.8
Eucgr.H05019 Eucalyptus grandis HOM05D001081 ORTHO05D004708 7.0e-14 82.0 121 39.7
A06p35070 Brassica napus HOM05D001081 ORTHO05D004708 1.2e-13 81.3 117 34.2
BolC7t44875H Brassica oleracea HOM05D001081 ORTHO05D004708 1.6e-13 80.9 121 33.9
BraA06t26428Z Brassica rapa HOM05D001081 ORTHO05D004708 1.6e-13 80.9 117 33.3
COL.COLO4_16768 Corchorus olitorius HOM05D001081 ORTHO05D004708 1.6e-13 80.9 166 30.1
Thhalv10003513m.g Eutrema salsugineum HOM05D001081 ORTHO05D004708 1.6e-13 80.9 115 37.4
Sp2g23080 Schrenkiella parvula HOM05D001081 ORTHO05D004708 1.6e-13 80.9 115 36.5
Eucgr.K00385 Eucalyptus grandis HOM05D001081 ORTHO05D004708 2.0e-13 80.5 115 39.1
MBI06_g13415_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D004708 2.7e-13 80.1 129 34.9
Nn1g00260 Nelumbo nucifera HOM05D001081 ORTHO05D004708 2.7e-13 80.1 114 36.0
PSO063G4550 Papaver somniferum HOM05D001081 ORTHO05D004708 3.5e-13 79.7 113 36.3
PSO781G0289 Papaver somniferum HOM05D001081 ORTHO05D004708 3.5e-13 79.7 113 37.2
Dinv35339 Davidia involucrata HOM05D001081 ORTHO05D004708 4.6e-13 79.3 114 35.1
Eucgr.G00091 Eucalyptus grandis HOM05D001081 ORTHO05D004708 4.6e-13 79.3 121 38.8
Thhalv10003512m.g Eutrema salsugineum HOM05D001081 ORTHO05D004708 5.9e-13 79.0 115 37.4
CARHR189250 Cardamine hirsuta HOM05D001081 ORTHO05D004708 7.8e-13 78.6 109 36.7
BcaNung01806 Brassica carinata HOM05D001081 ORTHO05D004708 1.3e-12 77.8 119 36.1
C07p43530 Brassica napus HOM05D001081 ORTHO05D004708 1.3e-12 77.8 119 36.1
BolC7t44880H Brassica oleracea HOM05D001081 ORTHO05D004708 1.3e-12 77.8 119 36.1
Eucgr.G00110 Eucalyptus grandis HOM05D001081 ORTHO05D004708 1.3e-12 77.8 113 38.1
AT5G24275 Arabidopsis thaliana HOM05D001081 ORTHO05D004708 1.7e-12 77.4 121 35.5
BcaNung01219 Brassica carinata HOM05D001081 ORTHO05D004708 1.7e-12 77.4 117 34.2
C07p43490 Brassica napus HOM05D001081 ORTHO05D004708 1.7e-12 77.4 117 34.2
BraA06t26425Z Brassica rapa HOM05D001081 ORTHO05D004708 1.7e-12 77.4 119 36.1
PSO170G6091 Papaver somniferum HOM05D001081 ORTHO05D004708 1.7e-12 77.4 113 35.4
Aqoxy4G01595 Aquilegia oxysepala HOM05D001081 ORTHO05D004708 3.0e-12 76.6 142 32.4
QL09p008772 Quercus lobata HOM05D001081 ORTHO05D004708 3.0e-12 76.6 114 32.5
QL09p008909 Quercus lobata HOM05D001081 ORTHO05D004708 3.0e-12 76.6 114 32.5
Sabra11G0071600 Salix brachista HOM05D001081 ORTHO05D004708 3.0e-12 76.6 117 35.9
TWI39G0445 Tripterygium wilfordii HOM05D001081 ORTHO05D004708 3.0e-12 76.6 117 35.0
Cpa.g.sc3.89 Carica papaya HOM05D001081 ORTHO05D004708 3.9e-12 76.3 114 40.4
Gohir.A11G015200 Gossypium hirsutum HOM05D001081 ORTHO05D004708 3.9e-12 76.3 197 30.5
Atru.chr12.2203 Acer truncatum HOM05D001081 ORTHO05D004708 5.0e-12 75.9 114 37.7
A06p35020 Brassica napus HOM05D001081 ORTHO05D004708 5.0e-12 75.9 117 35.0
Actinidia08651 Actinidia chinensis HOM05D001081 ORTHO05D004708 6.6e-12 75.5 117 34.2
CARHR189220 Cardamine hirsuta HOM05D001081 ORTHO05D004708 1.1e-11 74.7 112 34.8
AL6G35710 Arabidopsis lyrata HOM05D001081 ORTHO05D004708 1.5e-11 74.3 118 32.2
Ciclev10018477m.g Citrus clementina HOM05D001081 ORTHO05D004708 3.3e-11 73.2 117 32.5
Gohir.D11G015300 Gossypium hirsutum HOM05D001081 ORTHO05D004708 3.3e-11 73.2 111 36.0
GSVIVG01038555001 Vitis vinifera HOM05D001081 ORTHO05D004708 3.3e-11 73.2 114 36.8
TAR375G0280 Trochodendron aralioides HOM05D001081 ORTHO05D004708 4.3e-11 72.8 110 38.2
RcHm_v2.0_Chr1g0380531 Rosa chinensis HOM05D001081 ORTHO05D004708 5.6e-11 72.4 137 29.9
SGA_v2.0_scaffold192G40538 Striga asiatica HOM05D001081 ORTHO05D004708 5.6e-11 72.4 127 35.4
Aqoxy3G00072 Aquilegia oxysepala HOM05D001081 ORTHO05D004708 7.3e-11 72.0 143 32.2
Hma1.2p1_0404F.1_g145360 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 7.3e-11 72.0 120 33.3
Carub.0006s2205 Capsella rubella HOM05D001081 ORTHO05D004708 9.5e-11 71.6 116 35.3
THA.LOC104798901 Tarenaya hassleriana HOM05D001081 ORTHO05D004708 9.5e-11 71.6 126 31.7
Carub.0006s2203 Capsella rubella HOM05D001081 ORTHO05D004708 1.2e-10 71.2 119 31.9
HanXRQChr08g0225331 Helianthus annuus HOM05D001081 ORTHO05D004708 1.2e-10 71.2 132 29.5
Rhsim03G0209100 Rhododendron simsii HOM05D001081 ORTHO05D004708 1.2e-10 71.2 113 33.6
Ah.07g205570 Amaranthus hybridus HOM05D001081 ORTHO05D004708 1.6e-10 70.9 110 32.7
Migut.F00209 Erythranthe guttata HOM05D001081 ORTHO05D004708 1.6e-10 70.9 114 34.2
Pp3c8_21182 Physcomitrium patens HOM05D001081 ORTHO05D004708 2.1e-10 70.5 150 28.0
HanXRQChr08g0225271 Helianthus annuus HOM05D001081 ORTHO05D003320 2.8e-10 70.1 118 31.4
BcaNung01800 Brassica carinata HOM05D001081 ORTHO05D004708 3.6e-10 69.7 115 35.7
FvH4_7g31550 Fragaria vesca HOM05D001081 ORTHO05D004708 3.6e-10 69.7 113 35.4
Gorai.007G015700 Gossypium raimondii HOM05D001081 ORTHO05D004708 3.6e-10 69.7 111 36.9
Pp3c8_21170 Physcomitrium patens HOM05D001081 ORTHO05D004708 6.2e-10 68.9 152 26.3
Solyc03g083130.3 Solanum lycopersicum HOM05D001081 ORTHO05D004708 6.2e-10 68.9 141 31.9
Sopen03g022900 Solanum pennellii HOM05D001081 ORTHO05D004708 6.2e-10 68.9 141 31.9
Sabra12G0016000 Salix brachista HOM05D001081 ORTHO05D004708 8.0e-10 68.6 117 33.3
Thecc.03G199500 Theobroma cacao HOM05D001081 ORTHO05D004708 8.0e-10 68.6 117 31.6
Hund21007 Selenicereus undatus HOM05D001081 ORTHO05D004708 1.0e-09 68.2 114 31.6
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 1.8e-09 67.4 94 37.2
Potri.012G016100 Populus trichocarpa HOM05D001081 ORTHO05D004708 2.3e-09 67.0 129 34.1
CAN.G481.14 Capsicum annuum HOM05D001081 ORTHO05D004708 3.1e-09 66.6 134 29.9
Oeu041052.4 Olea europaea HOM05D001081 ORTHO05D004708 5.2e-09 65.9 114 31.6
Peaxi162Scf00740g00138 Petunia axillaris HOM05D001081 ORTHO05D004708 6.8e-09 65.5 134 28.4
DCAR_008928 Daucus carota HOM05D001081 ORTHO05D004708 1.2e-08 64.7 105 31.4
FAN03G0095 Fragaria x ananassa HOM05D001081 ORTHO05D004708 1.2e-08 64.7 113 33.6
Manes.01G183500 Manihot esculenta HOM05D001081 ORTHO05D004708 1.2e-08 64.7 120 31.7
SEGI_09597 Sequoiadendron giganteum HOM05D004461 ORTHO05D005543 1.5e-08 64.3 105 41.9
Nitab4.5_0000548g0110 Nicotiana tabacum HOM05D001081 ORTHO05D004708 2.6e-08 63.5 114 32.5
CANSAT21G0069 Cannabis sativa HOM05D001081 ORTHO05D004708 4.4e-08 62.8 122 31.1
AT5G24280 Arabidopsis thaliana HOM05D001081 ORTHO05D004708 5.8e-08 62.4 110 30.9
ECA233G5228 Erigeron canadensis HOM05D001081 ORTHO05D004708 9.8e-08 61.6 115 31.3
EL10Ac3g05278 Beta vulgaris HOM05D001081 ORTHO05D004708 1.3e-07 61.2 114 30.7
Medtr1g008050 Medicago truncatula HOM05D001081 ORTHO05D004708 1.7e-07 60.8 132 26.5
AUR62006087 Chenopodium quinoa HOM05D001081 ORTHO05D004708 2.9e-07 60.1 107 29.9
Lj4g0008522 Lotus japonicus HOM05D001081 ORTHO05D004708 2.9e-07 60.1 132 29.5
TPR.G12082 Trifolium pratense HOM05D001081 ORTHO05D004708 2.9e-07 60.1 132 29.5
Lsat_1_v5_gn_8_5261 Lactuca sativa HOM05D001081 ORTHO05D004708 2.4e-06 57.0 96 31.2


User provided reference genes

Program Settings