Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_31971 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 2.1e-125 452.6 263 100.0
Gorai.001G018900 Gossypium raimondii HOM05D005425 ORTHO05D006686 1.9e-46 190.3 126 79.4
Gohir.A07G018500 Gossypium hirsutum HOM05D005425 ORTHO05D006686 4.3e-46 189.1 126 78.6
Gohir.D07G018300 Gossypium hirsutum HOM05D005425 ORTHO05D006686 1.6e-45 187.2 126 78.6
Ca_21353_v3 Cicer arietinum L. HOM05D005425 ORTHO05D006686 1.1e-44 184.5 176 64.8
Medtr4g123593 Medicago truncatula HOM05D005425 ORTHO05D006686 1.1e-44 184.5 190 66.8
Lj4g0004112 Lotus japonicus HOM05D005425 ORTHO05D006686 1.4e-44 184.1 111 82.9
Eucgr.C00752 Eucalyptus grandis HOM05D005425 ORTHO05D006686 4.0e-44 182.6 120 77.5
Psat4g020320 Pisum sativum HOM05D005425 ORTHO05D006686 4.0e-44 182.6 119 78.2
Glyma.13G116300 Glycine max HOM05D005425 ORTHO05D006686 6.8e-44 181.8 120 76.7
TWI34G0652 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 1.2e-43 181.0 121 77.7
COL.COLO4_21175 Corchorus olitorius HOM05D005425 ORTHO05D006686 1.5e-43 180.6 215 56.3
ECA247G3713 Erigeron canadensis HOM05D005425 ORTHO05D006686 2.6e-43 179.9 158 70.9
Glyma.17G043500 Glycine max HOM05D005425 ORTHO05D006686 2.6e-43 179.9 120 75.8
TWI63G1799 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 2.6e-43 179.9 115 78.3
Potri.006G217400 Populus trichocarpa HOM05D005425 ORTHO05D006686 3.4e-43 179.5 187 59.4
Duzib150G0231 Durio zibethinus HOM05D005425 ORTHO05D006686 4.4e-43 179.1 126 72.2
MD15G1225900 Malus domestica HOM05D005425 ORTHO05D006686 5.8e-43 178.7 118 75.4
AUR62017596 Chenopodium quinoa HOM05D005425 ORTHO05D006686 7.5e-43 178.3 114 78.1
HanXRQChr02g0040411 Helianthus annuus HOM05D005425 ORTHO05D006686 7.5e-43 178.3 115 76.5
arahy.Tifrunner.gnm1.ann1.A16VYK Arachis hypogaea HOM05D005425 ORTHO05D006686 9.9e-43 177.9 242 57.4
MD02G1106000 Malus domestica HOM05D005425 ORTHO05D006686 9.9e-43 177.9 116 75.9
DCAR_012869 Daucus carota HOM05D005425 ORTHO05D006686 1.3e-42 177.6 182 63.2
Cfa010679 Carpinus fangiana HOM05D005425 ORTHO05D006686 1.7e-42 177.2 115 77.4
arahy.Tifrunner.gnm1.ann1.I1NZHN Arachis hypogaea HOM05D005425 ORTHO05D006686 2.2e-42 176.8 242 57.0
EL10Ac9g22844 Beta vulgaris HOM05D005425 ORTHO05D006686 2.2e-42 176.8 112 77.7
AUR62015135 Chenopodium quinoa HOM05D005425 ORTHO05D006686 2.9e-42 176.4 121 74.4
ATR0006G051 Amborella trichopoda HOM05D005425 ORTHO05D006686 3.7e-42 176.0 107 83.2
Lalb_Chr07g0181511 Lupinus albus HOM05D005425 ORTHO05D006686 3.7e-42 176.0 113 77.9
Hund24245 Selenicereus undatus HOM05D000001 ORTHO05D000003 3.7e-42 176.0 192 55.7
Thecc.09G067100 Theobroma cacao HOM05D005425 ORTHO05D006686 4.9e-42 175.6 126 73.0
Zm00001eb068040 Zea mays HOM05D005425 ORTHO05D006686 4.9e-42 175.6 109 82.6
CANSAT56G0436 Cannabis sativa HOM05D005425 ORTHO05D006686 1.1e-41 174.5 104 81.7
CANSAT56G2296 Cannabis sativa HOM05D005425 ORTHO05D006686 1.1e-41 174.5 104 81.7
Haze_26083 Corylus avellana HOM05D005425 ORTHO05D006686 1.1e-41 174.5 118 76.3
VMungo1215G3244 Vigna mungo HOM05D005425 ORTHO05D006686 1.1e-41 174.5 113 77.9
Atru.chr7.1809 Acer truncatum HOM05D005425 ORTHO05D006686 1.4e-41 174.1 107 81.3
Os04g0653100 Oryza sativa ssp. japonica HOM05D005425 ORTHO05D006686 1.4e-41 174.1 109 80.7
Duzib168G1380 Durio zibethinus HOM05D005425 ORTHO05D006686 1.9e-41 173.7 179 64.2
Lj4P729T25 Lonicera japonica HOM05D005425 ORTHO05D006686 2.4e-41 173.3 107 78.5
Prupe.7G189100 Prunus persica HOM05D005425 ORTHO05D006686 2.4e-41 173.3 114 75.4
PGR044G1074 Punica granatum HOM05D005425 ORTHO05D006686 4.1e-41 172.6 107 79.4
Ciclev10009195m.g Citrus clementina HOM05D005425 ORTHO05D006686 5.4e-41 172.2 104 81.7
Sabra06G0167600 Salix brachista HOM05D005425 ORTHO05D006686 5.4e-41 172.2 117 78.6
Haze_03605 Corylus avellana HOM05D006517 ORTHO05D007886 7.1e-41 171.8 115 75.7
PSO675G8782 Papaver somniferum HOM05D005425 ORTHO05D006686 7.1e-41 171.8 114 74.6
TPR.G12630 Trifolium pratense HOM05D005425 ORTHO05D006686 7.1e-41 171.8 118 74.6
GSVIVG01000275001 Vitis vinifera HOM05D005425 ORTHO05D006686 1.2e-40 171.0 107 80.4
Aqoxy6G03062 Aquilegia oxysepala HOM05D005425 ORTHO05D006686 1.6e-40 170.6 112 75.0
Lalb_Chr12g0200431 Lupinus albus HOM05D005425 ORTHO05D006686 1.6e-40 170.6 109 78.9
CiPaw.03G198700 Carya illinoinensis HOM05D005425 ORTHO05D006686 2.1e-40 170.2 111 78.4
Cc01_g12410 Coffea canephora HOM05D005425 ORTHO05D006686 2.1e-40 170.2 111 78.4
PSO717G0103 Papaver somniferum HOM05D005425 ORTHO05D006686 2.1e-40 170.2 114 73.7
Dinv19577 Davidia involucrata HOM05D005425 ORTHO05D006686 2.7e-40 169.9 110 77.3
RcHm_v2.0_Chr2g0096571 Rosa chinensis HOM05D005425 ORTHO05D006686 2.7e-40 169.9 120 70.8
Manes.03G055300 Manihot esculenta HOM05D005425 ORTHO05D006686 4.6e-40 169.1 126 71.4
Lsat_1_v5_gn_1_2721 Lactuca sativa HOM05D005425 ORTHO05D006686 6.0e-40 168.7 114 72.8
Sed0015214 Sechium edule HOM05D005425 ORTHO05D006686 7.8e-40 168.3 121 72.7
CsaV3_1G041480 Cucumis sativus L. HOM05D005425 ORTHO05D006686 1.0e-39 167.9 119 73.9
vmacro16402 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 1.3e-39 167.5 112 75.0
Actinidia20626 Actinidia chinensis HOM05D005425 ORTHO05D006686 1.7e-39 167.2 107 77.6
Ah.01g013630 Amaranthus hybridus HOM05D005425 ORTHO05D006686 1.7e-39 167.2 114 71.9
Oeu023197.1 Olea europaea HOM05D005425 ORTHO05D006686 1.7e-39 167.2 113 77.0
Nn6g31504 Nelumbo nucifera HOM05D005425 ORTHO05D006686 2.3e-39 166.8 111 75.7
MSTRG.1593 Avicennia marina HOM05D005425 ORTHO05D006686 3.9e-39 166.0 119 72.3
Phvul.003G125400 Phaseolus vulgaris HOM05D005425 ORTHO05D006686 5.1e-39 165.6 108 77.8
Sc19g0002240 Simmondsia chinensis HOM05D005425 ORTHO05D006686 5.1e-39 165.6 108 75.9
CSS0042296 Camellia sinensis var. sinensis HOM05D005425 ORTHO05D006686 8.6e-39 164.9 103 81.6
Migut.C01372 Erythranthe guttata HOM05D005425 ORTHO05D006686 1.1e-38 164.5 111 74.8
HPP92_002368 Vanilla planifolia HOM05D005425 ORTHO05D006686 1.5e-38 164.1 124 69.4
Nitab4.5_0000610g0160 Nicotiana tabacum HOM05D005425 ORTHO05D006686 2.5e-38 163.3 126 69.0
Manes.16G088201 Manihot esculenta HOM05D005425 ORTHO05D006686 3.3e-38 162.9 105 76.2
Peaxi162Scf00406g00239 Petunia axillaris HOM05D005425 ORTHO05D006686 7.3e-38 161.8 122 71.3
HPP92_027595 Vanilla planifolia HOM05D005425 ORTHO05D006686 9.5e-38 161.4 124 68.5
SEGI_36327 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 2.8e-37 159.8 93 90.3
FvH4_1g09870 Fragaria vesca HOM05D005425 ORTHO05D006686 3.6e-37 159.5 111 71.2
FAN19G0780 Fragaria x ananassa HOM05D005425 ORTHO05D006686 3.6e-37 159.5 111 71.2
CAN.G764.11 Capsicum annuum HOM05D005425 ORTHO05D006686 4.7e-37 159.1 112 72.3
Pp3c23_11420 Physcomitrium patens HOM05D005425 ORTHO05D006686 4.7e-37 159.1 112 67.9
AL5G21490 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 6.2e-37 158.7 123 69.1
Sopen11g030870 Solanum pennellii HOM05D005425 ORTHO05D006686 6.2e-37 158.7 112 71.4
PGSC0003DMG401015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 6.2e-37 158.7 110 74.5
PGSC0003DMG402015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 6.2e-37 158.7 110 74.5
Solyc11g073240.2 Solanum lycopersicum HOM05D005425 ORTHO05D006686 1.1e-36 157.9 112 71.4
THA.LOC104810974 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 1.1e-36 157.9 110 72.7
TAR383G0806 Trochodendron aralioides HOM05D005425 ORTHO05D006686 1.8e-36 157.1 132 65.2
AT3G43520 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 4.0e-36 156.0 112 70.5
PGSC0003DMG400015542 Solanum tuberosum HOM05D005425 ORTHO05D006686 4.0e-36 156.0 109 73.4
Carub.0005s0927 Capsella rubella HOM05D005425 ORTHO05D006686 6.8e-36 155.2 112 69.6
HPP92_010993 Vanilla planifolia HOM05D005425 ORTHO05D006686 1.2e-35 154.5 120 65.8
Rhsim12G0137300 Rhododendron simsii HOM05D005425 ORTHO05D006686 2.0e-35 153.7 125 64.8
THA.LOC104799598 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 2.0e-35 153.7 110 70.9
Aa31LG4G13370 Aethionema arabicum HOM05D005425 ORTHO05D006686 3.4e-35 152.9 112 70.5
CDE11G0474 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 4.4e-35 152.5 117 64.1
QL11p003539 Quercus lobata HOM05D005425 ORTHO05D006686 4.4e-35 152.5 166 54.2
MBI13_g05972_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 5.8e-35 152.1 116 69.0
SMO347G0418 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 5.8e-35 152.1 113 68.1
unitig_578.g16119 Utricularia gibba HOM05D005425 ORTHO05D006686 5.8e-35 152.1 163 58.9
SGA_v2.0_scaffold118G32605 Striga asiatica HOM05D005425 ORTHO05D006686 1.3e-34 151.0 119 65.5
CARHR098710 Cardamine hirsuta HOM05D005425 ORTHO05D006686 3.8e-34 149.4 111 67.6
Pp3c23_5560 Physcomitrium patens HOM05D005425 ORTHO05D006686 3.8e-34 149.4 115 65.2
A06p26640 Brassica napus HOM05D005425 ORTHO05D006686 4.9e-34 149.1 114 67.5
BraA06t25598Z Brassica rapa HOM05D005425 ORTHO05D006686 4.9e-34 149.1 114 67.5
MBI13_g09074_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 8.4e-34 148.3 117 64.1
BcaB02g10778 Brassica carinata HOM05D005425 ORTHO05D006686 1.4e-33 147.5 107 70.1
BcaC01g02214 Brassica carinata HOM05D005425 ORTHO05D006686 2.4e-33 146.7 116 65.5
C03p67740 Brassica napus HOM05D005425 ORTHO05D006686 2.4e-33 146.7 116 65.5
BolSC21t60236H Brassica oleracea HOM05D005425 ORTHO05D006686 2.4e-33 146.7 116 65.5
AUR62026084 Chenopodium quinoa HOM05D005425 ORTHO05D006686 4.1e-33 146.0 109 67.9
Sp5g17760 Schrenkiella parvula HOM05D005425 ORTHO05D006686 4.1e-33 146.0 112 67.0
Ah.04g151490 Amaranthus hybridus HOM05D005425 ORTHO05D006686 1.2e-32 144.4 109 66.1
AagrBONN_evm.TU.Sc2ySwM_344.3815 Anthoceros agrestis HOM05D005425 ORTHO05D006686 4.6e-32 142.5 113 62.8
AUR62024499 Chenopodium quinoa HOM05D005425 ORTHO05D006686 4.6e-32 142.5 109 67.0
THA.LOC104804448 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 4.6e-32 142.5 107 68.2
SMO351G0348 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 6.0e-32 142.1 107 64.5
EL10Ac3g07129 Beta vulgaris HOM05D005425 ORTHO05D006686 7.8e-32 141.7 112 64.3
Sc13g0001610 Simmondsia chinensis HOM05D005425 ORTHO05D006686 3.0e-31 139.8 109 66.1
FAN23G2130 Fragaria x ananassa HOM05D005425 ORTHO05D006686 1.5e-30 137.5 94 72.3
FAN28G1834 Fragaria x ananassa HOM05D005425 ORTHO05D006686 1.5e-30 137.5 94 72.3
CDE05G1879 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 2.1e-29 133.7 99 66.7
Sp4g06390 Schrenkiella parvula HOM05D005425 ORTHO05D006686 2.1e-29 133.7 108 63.9
AT2G26240 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 3.6e-29 132.9 108 62.0
BcaC07g40833 Brassica carinata HOM05D005425 ORTHO05D006686 8.1e-29 131.7 108 62.0
CARHR115050 Cardamine hirsuta HOM05D005425 ORTHO05D006686 8.1e-29 131.7 108 62.0
Mapoly0059s0086 Marchantia polymorpha HOM05D005425 ORTHO05D006686 8.1e-29 131.7 95 70.5
BcaB08g35283 Brassica carinata HOM05D005425 ORTHO05D006686 1.1e-28 131.3 108 62.0
A09p55370 Brassica napus HOM05D000181 ORTHO05D004115 1.8e-28 130.6 108 61.1
C08p38290 Brassica napus HOM05D000181 ORTHO05D004115 1.8e-28 130.6 108 61.1
BolC8t51404H Brassica oleracea HOM05D005425 ORTHO05D006686 1.8e-28 130.6 108 61.1
BraA09t40938Z Brassica rapa HOM05D005425 ORTHO05D006686 2.4e-28 130.2 107 61.7
AL4G18820 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 3.1e-28 129.8 108 61.1
Carub.0004s0606 Capsella rubella HOM05D005425 ORTHO05D006686 4.0e-28 129.4 105 63.8
vmacro13523 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 3.4e-27 126.3 103 65.0
Aa31LG5G9560 Aethionema arabicum HOM05D005425 ORTHO05D006686 3.8e-26 122.9 111 59.5
PGR142G0340 Punica granatum HOM05D005425 ORTHO05D006686 6.4e-26 122.1 114 58.8
Thhalv10002166m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 1.4e-20 104.4 86 60.5
CBR_g16036 Chara braunii HOM05D005425 ORTHO05D006686 3.4e-19 99.8 105 49.5
Thhalv10002673m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 3.4e-19 99.8 78 69.2
Zm00001eb432380 Zea mays HOM05D005425 ORTHO05D006686 3.9e-15 86.3 84 57.1
Oeu020536.1 Olea europaea HOM05D005425 ORTHO05D006686 9.3e-09 65.1 74 50.0
unitig_62.g23280 Utricularia gibba HOM05D004888 ORTHO05D005792 4.6e-08 62.8 99 42.4
Migut.M01776 Erythranthe guttata HOM05D004888 ORTHO05D005792 7.9e-08 62.0 101 39.6
FvH4_1g06370 Fragaria vesca HOM05D005425 ORTHO05D046282 7.9e-08 62.0 65 55.4
SGA_v2.0_scaffold8G04307 Striga asiatica HOM05D004888 ORTHO05D005792 7.9e-08 62.0 101 39.6
C06p06010 Brassica napus HOM05D004888 ORTHO05D005792 2.3e-07 60.5 103 40.8
BolC6t35714H Brassica oleracea HOM05D004888 ORTHO05D005792 2.3e-07 60.5 103 40.8
BraA06t23494Z Brassica rapa HOM05D004888 ORTHO05D005792 2.3e-07 60.5 103 40.8
FAN19G2796 Fragaria x ananassa HOM05D005425 ORTHO05D046282 2.3e-07 60.5 65 53.8
MBI18_g42744_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 2.3e-07 60.5 96 42.7
Zm00001eb041420 Zea mays HOM05D001962 ORTHO05D002236 3.9e-07 59.7 35 85.7
BcaB07g33513 Brassica carinata HOM05D004888 ORTHO05D005792 5.1e-07 59.3 102 40.2
A06p02870 Brassica napus HOM05D004888 ORTHO05D005792 5.1e-07 59.3 102 40.2
MSTRG.6911 Avicennia marina HOM05D004888 ORTHO05D005792 6.7e-07 58.9 101 38.6
Peaxi162Scf00964g00141 Petunia axillaris HOM05D004888 ORTHO05D005792 6.7e-07 58.9 101 37.6
Rhsim06G0216300 Rhododendron simsii HOM05D004888 ORTHO05D005792 6.7e-07 58.9 101 37.6
BcaC08g43255 Brassica carinata HOM05D004888 ORTHO05D005792 8.7e-07 58.5 103 38.8
QL08p010712 Quercus lobata HOM05D004888 ORTHO05D005792 8.7e-07 58.5 101 38.6
QL08p011155 Quercus lobata HOM05D004888 ORTHO05D005792 8.7e-07 58.5 101 38.6
CAN.G1781.4 Capsicum annuum HOM05D004888 ORTHO05D005792 1.5e-06 57.8 106 36.8
DCAR_010046 Daucus carota HOM05D004888 ORTHO05D005792 1.9e-06 57.4 99 38.4
Potri.011G138100 Populus trichocarpa HOM05D004888 ORTHO05D005792 1.9e-06 57.4 101 35.6
CSS0004402 Camellia sinensis var. sinensis HOM05D004888 ORTHO05D005792 2.5e-06 57.0 101 36.6
Duzib213G0117 Durio zibethinus HOM05D004888 ORTHO05D005792 2.5e-06 57.0 101 37.6
Manes.03G124500 Manihot esculenta HOM05D004888 ORTHO05D005792 2.5e-06 57.0 101 35.6
Nitab4.5_0001393g0120 Nicotiana tabacum HOM05D004888 ORTHO05D005792 2.5e-06 57.0 101 36.6
Sopen07g032670 Solanum pennellii HOM05D004888 ORTHO05D005792 3.3e-06 56.6 107 35.5
PGSC0003DMG400014390 Solanum tuberosum HOM05D004888 ORTHO05D005792 3.3e-06 56.6 101 37.6
CBR_g50174 Chara braunii HOM05D004888 ORTHO05D005792 4.3e-06 56.2 98 36.7
vmacro11732 Vaccinium macrocarpon HOM05D004888 ORTHO05D005792 4.3e-06 56.2 101 37.6
Thecc.07G042500 Theobroma cacao HOM05D004888 ORTHO05D005792 5.6e-06 55.8 101 35.6
Lsat_1_v5_gn_7_108760 Lactuca sativa HOM05D004888 ORTHO05D005792 7.4e-06 55.5 103 38.8
Solyc10g006310.3 Solanum lycopersicum HOM05D004888 ORTHO05D005792 7.4e-06 55.5 106 34.9
Aa31LG8G7320 Aethionema arabicum HOM05D004888 ORTHO05D005792 9.6e-06 55.1 101 37.6
Nitab4.5_0003812g0040 Nicotiana tabacum HOM05D004888 ORTHO05D005792 9.6e-06 55.1 103 35.9
Potri.001G424000 Populus trichocarpa HOM05D004888 ORTHO05D005792 9.6e-06 55.1 101 34.7
Solyc07g064470.4 Solanum lycopersicum HOM05D004888 ORTHO05D005792 9.6e-06 55.1 107 34.6
Sopen10g002260 Solanum pennellii HOM05D004888 ORTHO05D005792 9.6e-06 55.1 106 34.9


User provided reference genes

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