Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_31795 Sequoiadendron giganteum HOM05D004978 ORTHO05D005621 8.2e-134 480.3 231 100.0
ATR0665G047 Amborella trichopoda HOM05D004978 ORTHO05D005621 3.5e-20 102.8 100 53.0
Sc05g0001300 Simmondsia chinensis HOM05D004978 ORTHO05D005621 4.6e-20 102.4 108 50.9
Nn1g02459 Nelumbo nucifera HOM05D004978 ORTHO05D005621 3.0e-19 99.8 88 58.0
BcaB01g04842 Brassica carinata HOM05D004978 ORTHO05D005621 5.1e-19 99.0 95 50.5
QL01p000805 Quercus lobata HOM05D004978 ORTHO05D005621 6.7e-19 98.6 104 50.0
TWI12G0244 Tripterygium wilfordii HOM05D004978 ORTHO05D005621 8.7e-19 98.2 120 44.2
CDE02G4319 Ceratophyllum demersum HOM05D004978 ORTHO05D005621 1.9e-18 97.1 77 57.1
Dinv32884 Davidia involucrata HOM05D004978 ORTHO05D005621 1.9e-18 97.1 94 55.3
C03p11220 Brassica napus HOM05D004978 ORTHO05D005621 2.5e-18 96.7 89 53.9
BolC3t13593H Brassica oleracea HOM05D004978 ORTHO05D005621 2.5e-18 96.7 89 53.9
TWI75G1276 Tripterygium wilfordii HOM05D004978 ORTHO05D005621 2.5e-18 96.7 103 48.5
Aa31LG9G14570 Aethionema arabicum HOM05D004978 ORTHO05D005621 3.3e-18 96.3 89 55.1
A03p09660 Brassica napus HOM05D004978 ORTHO05D005621 3.3e-18 96.3 89 53.9
Thhalv10013262m.g Eutrema salsugineum HOM05D004978 ORTHO05D005621 5.6e-18 95.5 79 57.0
Rhsim01G0272000 Rhododendron simsii HOM05D004978 ORTHO05D005621 5.6e-18 95.5 99 47.5
BcaB01g04828 Brassica carinata HOM05D004978 ORTHO05D005621 7.4e-18 95.1 89 52.8
CsaV3_7G027890 Cucumis sativus L. HOM05D004978 ORTHO05D005621 7.4e-18 95.1 103 50.5
Sp6g24570 Schrenkiella parvula HOM05D004978 ORTHO05D005621 7.4e-18 95.1 77 58.4
Solyc09g065690.4 Solanum lycopersicum HOM05D004978 ORTHO05D005621 7.4e-18 95.1 75 57.3
AT5G19840 Arabidopsis thaliana HOM05D004978 ORTHO05D005621 9.6e-18 94.7 89 52.8
CARHR193040 Cardamine hirsuta HOM05D004978 ORTHO05D005621 9.6e-18 94.7 89 52.8
Peaxi162Scf00259g00051 Petunia axillaris HOM05D004978 ORTHO05D005621 9.6e-18 94.7 86 50.0
Sopen09g027430 Solanum pennellii HOM05D004978 ORTHO05D005621 9.6e-18 94.7 68 63.2
Carub.0006s1819 Capsella rubella HOM05D004978 ORTHO05D005621 1.3e-17 94.4 89 51.7
PGSC0003DMG400019310 Solanum tuberosum HOM05D004978 ORTHO05D005621 1.3e-17 94.4 75 57.3
GSVIVG01003120001 Vitis vinifera HOM05D004978 ORTHO05D005621 1.3e-17 94.4 94 53.2
Actinidia24924 Actinidia chinensis HOM05D004978 ORTHO05D005621 2.1e-17 93.6 104 47.1
Aqoxy5G00398 Aquilegia oxysepala HOM05D004978 ORTHO05D005621 2.1e-17 93.6 99 46.5
Gohir.D08G072400 Gossypium hirsutum HOM05D004978 ORTHO05D005621 2.1e-17 93.6 89 50.6
Gorai.004G076600 Gossypium raimondii HOM05D004978 ORTHO05D005621 2.1e-17 93.6 89 50.6
Manes.05G081900 Manihot esculenta HOM05D004978 ORTHO05D005621 2.1e-17 93.6 95 48.4
SGA_v2.0_scaffold1G00534 Striga asiatica HOM05D004978 ORTHO05D005621 2.1e-17 93.6 88 48.9
Zm00001eb370120 Zea mays HOM05D004978 ORTHO05D005621 2.1e-17 93.6 82 57.3
AL6G31360 Arabidopsis lyrata HOM05D004978 ORTHO05D005621 2.8e-17 93.2 89 51.7
BraA03t10282Z Brassica rapa HOM05D004978 ORTHO05D005621 2.8e-17 93.2 67 65.7
CAN.G433.6 Capsicum annuum HOM05D004978 ORTHO05D005621 2.8e-17 93.2 80 55.0
COL.COLO4_09187 Corchorus olitorius HOM05D004978 ORTHO05D005621 2.8e-17 93.2 95 47.4
Nitab4.5_0004115g0020 Nicotiana tabacum HOM05D004978 ORTHO05D005621 2.8e-17 93.2 99 46.5
PGR044G1133 Punica granatum HOM05D004978 ORTHO05D005621 2.8e-17 93.2 78 55.1
Duzib133G0140 Durio zibethinus HOM05D004978 ORTHO05D005621 3.7e-17 92.8 81 55.6
Lj2A1164T58 Lonicera japonica HOM05D004978 ORTHO05D005621 3.7e-17 92.8 83 50.6
TAR636G2873 Trochodendron aralioides HOM05D004978 ORTHO05D005621 3.7e-17 92.8 92 53.3
Atru.chr5.1521 Acer truncatum HOM05D004978 ORTHO05D005621 4.8e-17 92.4 68 63.2
PSO832G2480 Papaver somniferum HOM05D004978 ORTHO05D005621 4.8e-17 92.4 127 40.2
CANSAT25G0263 Cannabis sativa HOM05D004978 ORTHO05D005621 6.2e-17 92.0 103 46.6
ClCG09G007410 Citrullus lanatus HOM05D004978 ORTHO05D005621 6.2e-17 92.0 107 47.7
Haze_04642 Corylus avellana HOM05D004978 ORTHO05D005621 6.2e-17 92.0 114 43.0
ECA236G1829 Erigeron canadensis HOM05D004978 ORTHO05D005621 6.2e-17 92.0 68 61.8
Gohir.A08G063900 Gossypium hirsutum HOM05D004978 ORTHO05D005621 6.2e-17 92.0 89 49.4
vmacro14887 Vaccinium macrocarpon HOM05D004978 ORTHO05D005621 6.2e-17 92.0 79 53.2
Cfa006202 Carpinus fangiana HOM05D004978 ORTHO05D005621 8.2e-17 91.7 131 39.7
CiPaw.07G086800 Carya illinoinensis HOM05D004978 ORTHO05D005621 8.2e-17 91.7 88 51.1
AUR62011971 Chenopodium quinoa HOM05D004978 ORTHO05D005621 8.2e-17 91.7 68 63.2
PSO210G1189 Papaver somniferum HOM05D004978 ORTHO05D005621 8.2e-17 91.7 127 40.2
MELO3C015807.2 Cucumis melo HOM05D004978 ORTHO05D005621 1.1e-16 91.3 91 52.7
QL12p042266 Quercus lobata HOM05D004978 ORTHO05D005621 1.1e-16 91.3 81 55.6
Thecc.01G271500 Theobroma cacao HOM05D004978 ORTHO05D005621 1.1e-16 91.3 89 49.4
TPR.G34891 Trifolium pratense HOM05D004978 ORTHO05D005621 1.1e-16 91.3 68 61.8
arahy.Tifrunner.gnm1.ann1.54WUVN Arachis hypogaea HOM05D004978 ORTHO05D005621 1.4e-16 90.9 126 44.4
arahy.Tifrunner.gnm1.ann1.ZM38TH Arachis hypogaea HOM05D004978 ORTHO05D005621 1.4e-16 90.9 126 44.4
Sed0016751 Sechium edule HOM05D004978 ORTHO05D005621 1.4e-16 90.9 98 49.0
HPP92_022057 Vanilla planifolia HOM05D004978 ORTHO05D005621 1.8e-16 90.5 69 63.8
Ca_09727_v3 Cicer arietinum L. HOM05D004978 ORTHO05D005621 2.4e-16 90.1 67 62.7
Nitab4.5_0000459g0120 Nicotiana tabacum HOM05D004978 ORTHO05D005621 2.4e-16 90.1 99 45.5
Potri.005G215200 Populus trichocarpa HOM05D004978 ORTHO05D005621 2.4e-16 90.1 83 50.6
Sed0003895 Sechium edule HOM05D004978 ORTHO05D005621 3.1e-16 89.7 100 49.0
Hund09547 Selenicereus undatus HOM05D004978 ORTHO05D005621 4.0e-16 89.4 86 51.2
Cc01_g19000 Coffea canephora HOM05D004978 ORTHO05D005621 5.3e-16 89.0 135 37.0
Lalb_Chr02g0142521 Lupinus albus HOM05D004978 ORTHO05D005621 5.3e-16 89.0 67 61.2
AUR62032283 Chenopodium quinoa HOM05D004978 ORTHO05D005621 6.9e-16 88.6 68 61.8
MD03G1258100 Malus domestica HOM05D004978 ORTHO05D005621 6.9e-16 88.6 80 51.2
FvH4_2g22940 Fragaria vesca HOM05D004978 ORTHO05D005621 9.0e-16 88.2 88 48.9
FAN20G1006 Fragaria x ananassa HOM05D004978 ORTHO05D005621 9.0e-16 88.2 88 48.9
FAN24G2655 Fragaria x ananassa HOM05D004978 ORTHO05D005621 9.0e-16 88.2 88 48.9
FAN27G2645 Fragaria x ananassa HOM05D004978 ORTHO05D005621 9.0e-16 88.2 88 48.9
HanXRQChr04g0113941 Helianthus annuus HOM05D004978 ORTHO05D005621 9.0e-16 88.2 80 51.2
Lj5g0010127 Lotus japonicus HOM05D004978 ORTHO05D005621 9.0e-16 88.2 74 58.1
MD11G1278700 Malus domestica HOM05D004978 ORTHO05D005621 9.0e-16 88.2 74 59.5
Prupe.8G234700 Prunus persica HOM05D004978 ORTHO05D005621 9.0e-16 88.2 66 62.1
Cpa.g.sc52.118 Carica papaya HOM05D004978 ORTHO05D005621 1.5e-15 87.4 78 52.6
Migut.D00356 Erythranthe guttata HOM05D004978 ORTHO05D005621 1.5e-15 87.4 78 51.3
Glyma.10G029800 Glycine max HOM05D004978 ORTHO05D005621 1.5e-15 87.4 67 59.7
Medtr1g071300 Medicago truncatula HOM05D004978 ORTHO05D005621 1.5e-15 87.4 87 48.3
Oeu014736.1 Olea europaea HOM05D004978 ORTHO05D005621 1.5e-15 87.4 104 45.2
FAN15G0608 Fragaria x ananassa HOM05D004978 ORTHO05D005621 2.6e-15 86.7 88 47.7
Ciclev10019332m.g Citrus clementina HOM05D004978 ORTHO05D005621 4.5e-15 85.9 68 55.9
Eucgr.K03324 Eucalyptus grandis HOM05D004978 ORTHO05D005621 4.5e-15 85.9 111 43.2
VMungo0720G1640 Vigna mungo HOM05D004978 ORTHO05D005621 5.8e-15 85.5 67 59.7
RcHm_v2.0_Chr6g0289911 Rosa chinensis HOM05D004978 ORTHO05D005621 1.0e-14 84.7 88 46.6
Lsat_1_v5_gn_8_93980 Lactuca sativa HOM05D004978 ORTHO05D005621 1.3e-14 84.3 68 57.4
Phvul.007G175000 Phaseolus vulgaris HOM05D004978 ORTHO05D005621 1.3e-14 84.3 73 57.5
SMO367G0146 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 2.2e-14 83.6 82 50.0
DCAR_002701 Daucus carota HOM05D004978 ORTHO05D005621 4.9e-14 82.4 97 40.2
Psat6g058480 Pisum sativum HOM05D004978 ORTHO05D005621 6.5e-14 82.0 80 51.2
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 6.5e-14 82.0 78 52.6
Glyma.02G144333 Glycine max HOM05D004978 ORTHO05D005621 1.4e-13 80.9 68 52.9
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 1.9e-13 80.5 78 51.3
unitig_0.g1132 Utricularia gibba HOM05D004978 ORTHO05D005621 3.2e-13 79.7 70 51.4
Pp3c26_13750 Physcomitrium patens HOM05D004978 ORTHO05D005621 3.5e-12 76.3 80 53.8
Lalb_Chr06g0162781 Lupinus albus HOM05D004978 ORTHO05D005621 4.6e-12 75.9 64 54.7
Ah.11g050220 Amaranthus hybridus HOM05D004978 ORTHO05D005621 1.8e-11 73.9 60 56.7
Mapoly0003s0071 Marchantia polymorpha HOM05D004978 ORTHO05D005621 1.9e-10 70.5 80 45.0
AagrBONN_evm.TU.Sc2ySwM_117.2029 Anthoceros agrestis HOM05D004978 ORTHO05D005621 3.3e-10 69.7 96 42.7


User provided reference genes

Program Settings