Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_31709 Sequoiadendron giganteum HOM05D000735 ORTHO05D004669 7.8e-48 193.4 91 100.0
Gohir.A01G036500 Gossypium hirsutum HOM05D000735 ORTHO05D004669 3.8e-18 94.7 65 73.8
Gohir.D01G023800 Gossypium hirsutum HOM05D000735 ORTHO05D004669 3.8e-18 94.7 65 73.8
Gorai.002G032300 Gossypium raimondii HOM05D000735 ORTHO05D004669 3.8e-18 94.7 65 73.8
Migut.M01487 Erythranthe guttata HOM05D000735 ORTHO05D004669 2.5e-17 92.0 65 72.3
TWI63G0350 Tripterygium wilfordii HOM05D000735 ORTHO05D004669 2.5e-17 92.0 87 58.6
Cc09_g00030 Coffea canephora HOM05D000735 ORTHO05D004669 5.5e-17 90.9 65 69.2
Nn1g08298 Nelumbo nucifera HOM05D000735 ORTHO05D004669 5.5e-17 90.9 65 69.2
FvH4_3g00030 Fragaria vesca HOM05D000735 ORTHO05D004669 7.2e-17 90.5 65 72.3
FAN21G4060 Fragaria x ananassa HOM05D000735 ORTHO05D004669 7.2e-17 90.5 65 72.3
FAN25G1440 Fragaria x ananassa HOM05D000735 ORTHO05D004669 7.2e-17 90.5 65 72.3
CSS0035227 Camellia sinensis var. sinensis HOM05D000735 ORTHO05D004669 1.2e-16 89.7 65 70.8
TAR365G0853 Trochodendron aralioides HOM05D000735 ORTHO05D004669 1.2e-16 89.7 65 69.2
HPP92_003015 Vanilla planifolia HOM05D000735 ORTHO05D004669 2.1e-16 89.0 65 69.2
HPP92_027541 Vanilla planifolia HOM05D000735 ORTHO05D004669 2.1e-16 89.0 65 69.2
PSO541G3261 Papaver somniferum HOM05D000735 ORTHO05D004669 2.7e-16 88.6 65 70.8
PSO675G6844 Papaver somniferum HOM05D000735 ORTHO05D004669 2.7e-16 88.6 65 70.8
Prupe.4G000200 Prunus persica HOM05D000735 ORTHO05D004669 2.7e-16 88.6 65 70.8
Zm00001eb308990 Zea mays HOM05D000735 ORTHO05D004669 2.7e-16 88.6 65 69.2
Atru.chr1.2250_Atru.chr1.2251 Acer truncatum HOM05D000735 ORTHO05D004669 3.6e-16 88.2 65 70.8
Pp3c13_14340 Physcomitrium patens HOM05D000735 ORTHO05D004669 3.6e-16 88.2 64 65.6
Lj2A254G92 Lonicera japonica HOM05D000735 ORTHO05D004669 4.6e-16 87.8 65 69.2
Potri.016G000200 Populus trichocarpa HOM05D000735 ORTHO05D004669 4.6e-16 87.8 65 69.2
Sed0022776 Sechium edule HOM05D000735 ORTHO05D004669 4.6e-16 87.8 65 69.2
ClCG01G011310 Citrullus lanatus HOM05D000735 ORTHO05D004669 6.1e-16 87.4 65 69.2
MELO3C026096.2 Cucumis melo HOM05D000735 ORTHO05D004669 6.1e-16 87.4 65 69.2
CsaV3_1G015620 Cucumis sativus L. HOM05D000735 ORTHO05D004669 6.1e-16 87.4 65 69.2
Hma1.2p1_0394F.1_g143380 Hydrangea macrophylla HOM05D000735 ORTHO05D004669 7.9e-16 87.0 65 69.2
Thecc.06G244900 Theobroma cacao HOM05D000735 ORTHO05D004669 7.9e-16 87.0 65 69.2
COL.COLO4_31970 Corchorus olitorius HOM05D000735 ORTHO05D004669 1.0e-15 86.7 65 69.2
Haze_07068 Corylus avellana HOM05D000735 ORTHO05D004669 1.0e-15 86.7 65 67.7
Mapoly0001s0256 Marchantia polymorpha HOM05D000735 ORTHO05D004669 1.0e-15 86.7 64 65.6
Zm00001eb316390 Zea mays HOM05D000735 ORTHO05D004669 1.4e-15 86.3 65 70.8
A07p44630 Brassica napus HOM05D000735 ORTHO05D004669 1.8e-15 85.9 65 70.8
BraA07t31972Z Brassica rapa HOM05D000735 ORTHO05D004669 1.8e-15 85.9 65 70.8
PGR042G3067 Punica granatum HOM05D000735 ORTHO05D004669 2.3e-15 85.5 65 67.7
Aqoxy1G01335 Aquilegia oxysepala HOM05D000735 ORTHO05D004669 3.0e-15 85.1 65 66.2
Thhalv10018385m.g Eutrema salsugineum HOM05D000735 ORTHO05D004669 3.0e-15 85.1 65 67.7
Sabra16G0008100 Salix brachista HOM05D000735 ORTHO05D004669 3.0e-15 85.1 69 65.2
Solyc04g056600.4 Solanum lycopersicum HOM05D000735 ORTHO05D004669 3.0e-15 85.1 65 64.6
Sopen04g025520 Solanum pennellii HOM05D000735 ORTHO05D004669 3.0e-15 85.1 65 64.6
C06p53470 Brassica napus HOM05D000735 ORTHO05D004669 3.9e-15 84.7 65 69.2
BolC6t40362H Brassica oleracea HOM05D000735 ORTHO05D004669 3.9e-15 84.7 65 69.2
SHI24427 Sapria himalayana HOM05D000735 ORTHO05D004669 3.9e-15 84.7 65 67.7
AL2G40300 Arabidopsis lyrata HOM05D000735 ORTHO05D004669 5.1e-15 84.3 65 69.2
AT1G79610 Arabidopsis thaliana HOM05D000735 ORTHO05D004669 5.1e-15 84.3 65 69.2
Carub.0002s2649 Capsella rubella HOM05D000735 ORTHO05D004669 5.1e-15 84.3 65 69.2
Os09g0286400 Oryza sativa ssp. japonica HOM05D000735 ORTHO05D004669 5.1e-15 84.3 65 64.6
arahy.Tifrunner.gnm1.ann1.3U55TZ Arachis hypogaea HOM05D000735 ORTHO05D004669 6.7e-15 84.0 65 69.2
arahy.Tifrunner.gnm1.ann1.LC1B8P Arachis hypogaea HOM05D000735 ORTHO05D004669 6.7e-15 84.0 65 69.2
Duzib192G0339 Durio zibethinus HOM05D000735 ORTHO05D004669 6.7e-15 84.0 65 67.7
Glyma.09G018200 Glycine max HOM05D000735 ORTHO05D004669 6.7e-15 84.0 65 70.8
Glyma.15G124100 Glycine max HOM05D000735 ORTHO05D004669 6.7e-15 84.0 65 70.8
Gohir.A06G181100 Gossypium hirsutum HOM05D000735 ORTHO05D004669 8.8e-15 83.6 65 67.7
Gohir.D06G187900 Gossypium hirsutum HOM05D000735 ORTHO05D004669 8.8e-15 83.6 65 67.7
Gorai.010G220200 Gossypium raimondii HOM05D000735 ORTHO05D004669 8.8e-15 83.6 65 67.7
Manes.10G068400 Manihot esculenta HOM05D000735 ORTHO05D004669 8.8e-15 83.6 65 66.2
vmacro03581 Vaccinium macrocarpon HOM05D000735 ORTHO05D004669 8.8e-15 83.6 65 66.2
CARHR073340 Cardamine hirsuta HOM05D000735 ORTHO05D004669 1.1e-14 83.2 65 66.2
CDE06G1452 Ceratophyllum demersum HOM05D000735 ORTHO05D004669 1.1e-14 83.2 64 65.6
THA.LOC104813594 Tarenaya hassleriana HOM05D000735 ORTHO05D004669 1.1e-14 83.2 65 64.6
Ca_00788_v3 Cicer arietinum L. HOM05D000735 ORTHO05D004669 1.5e-14 82.8 65 67.7
Ca_11371_v3 Cicer arietinum L. HOM05D000735 ORTHO05D004669 1.5e-14 82.8 65 67.7
Glyma.07G270400 Glycine max HOM05D000735 ORTHO05D004669 1.5e-14 82.8 65 67.7
HanXRQChr16g0515311 Helianthus annuus HOM05D000735 ORTHO05D004669 1.5e-14 82.8 65 67.7
Lsat_1_v5_gn_4_64520 Lactuca sativa HOM05D000735 ORTHO05D004669 1.5e-14 82.8 65 66.2
Lj6g0025657 Lotus japonicus HOM05D000735 ORTHO05D004669 1.5e-14 82.8 65 67.7
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 1.9e-14 82.4 65 67.7
Phvul.003G089800 Phaseolus vulgaris HOM05D000735 ORTHO05D004669 1.9e-14 82.4 65 66.2
Phvul.006G134033 Phaseolus vulgaris HOM05D000735 ORTHO05D004669 1.9e-14 82.4 65 70.8
GSVIVG01019363001 Vitis vinifera HOM05D000735 ORTHO05D004669 2.5e-14 82.0 64 62.5
ECA247G3031 Erigeron canadensis HOM05D000735 ORTHO05D004669 3.3e-14 81.6 65 66.2
Nitab4.5_0000276g0160 Nicotiana tabacum HOM05D000735 ORTHO05D004669 3.3e-14 81.6 65 63.1
Oeu025986.1 Olea europaea HOM05D000735 ORTHO05D004669 3.3e-14 81.6 65 64.6
Rhsim13G0137400 Rhododendron simsii HOM05D000735 ORTHO05D004669 3.3e-14 81.6 65 66.2
ATR0568G172 Amborella trichopoda HOM05D000735 ORTHO05D004669 4.3e-14 81.3 64 67.2
CiPaw.10G085400 Carya illinoinensis HOM05D000735 ORTHO05D004669 4.3e-14 81.3 65 64.6
Thhalv10011392m.g Eutrema salsugineum HOM05D000735 ORTHO05D004669 4.3e-14 81.3 65 64.6
Sc25g0001880 Simmondsia chinensis HOM05D000735 ORTHO05D004669 4.3e-14 81.3 64 62.5
Medtr2g028230 Medicago truncatula HOM05D000735 ORTHO05D004669 5.7e-14 80.9 65 67.7
VMungo0540G1324 Vigna mungo HOM05D000735 ORTHO05D004669 7.4e-14 80.5 63 71.4
arahy.Tifrunner.gnm1.ann1.MYF06S Arachis hypogaea HOM05D000735 ORTHO05D004669 9.7e-14 80.1 63 68.3
Lalb_Chr20g0119791 Lupinus albus HOM05D000735 ORTHO05D004669 9.7e-14 80.1 65 67.7
Sp1g41910 Schrenkiella parvula HOM05D000735 ORTHO05D004669 1.3e-13 79.7 65 63.1
Sp5g34680 Schrenkiella parvula HOM05D000735 ORTHO05D004669 1.3e-13 79.7 63 68.3
MSTRG.7102 Avicennia marina HOM05D000735 ORTHO05D004669 1.7e-13 79.3 65 63.1
A07p27040 Brassica napus HOM05D000290 ORTHO05D006513 2.2e-13 79.0 63 68.3
C06p29770 Brassica napus HOM05D000290 ORTHO05D006513 2.2e-13 79.0 63 68.3
BolC6t38138H Brassica oleracea HOM05D000290 ORTHO05D006513 2.2e-13 79.0 63 68.3
AT1G54370 Arabidopsis thaliana HOM05D000735 ORTHO05D004669 3.7e-13 78.2 65 60.0
Lalb_Chr18g0057601 Lupinus albus HOM05D000735 ORTHO05D004669 3.7e-13 78.2 65 66.2
Ah.01g012230 Amaranthus hybridus HOM05D000735 ORTHO05D004669 4.8e-13 77.8 63 66.7
AL1G64590 Arabidopsis lyrata HOM05D000735 ORTHO05D004669 6.3e-13 77.4 65 60.0
Carub.0001s4478 Capsella rubella HOM05D000735 ORTHO05D004669 1.4e-12 76.3 65 58.5
MD00G1208600 Malus domestica HOM05D000735 ORTHO05D004669 1.4e-12 76.3 83 53.0
SalBow8G3892 Salvia bowleyana HOM05D000735 ORTHO05D004669 2.4e-12 75.5 81 55.6
SMO367G0875 Selaginella moellendorffii HOM05D000735 ORTHO05D004669 5.3e-12 74.3 64 56.2
EL10Ac9g22942 Beta vulgaris HOM05D000735 ORTHO05D004669 1.2e-11 73.2 64 62.5
Actinidia01459 Actinidia chinensis HOM05D000735 ORTHO05D004669 1.5e-11 72.8 70 58.6
AUR62015223 Chenopodium quinoa HOM05D000735 ORTHO05D004669 1.5e-11 72.8 63 63.5
AUR62017691 Chenopodium quinoa HOM05D000735 ORTHO05D004669 2.0e-11 72.4 63 63.5
SGA_v2.0_scaffold186G40162 Striga asiatica HOM05D000735 ORTHO05D004669 2.0e-11 72.4 97 47.4
Hund24367 Selenicereus undatus HOM05D000735 ORTHO05D004669 3.4e-11 71.6 75 56.0
Ciclev10018215m.g Citrus clementina HOM05D000735 ORTHO05D004669 7.7e-11 70.5 63 61.9
CBR_g4705 Chara braunii HOM05D000019 ORTHO05D000002 1.0e-10 70.1 64 56.2
unitig_26.g10052 Utricularia gibba HOM05D000735 ORTHO05D004669 2.2e-10 68.9 69 58.0
MCO07G302 Micromonas commoda HOM05D000735 ORTHO05D004669 3.8e-10 68.2 64 56.2
Mapoly0058s0105 Marchantia polymorpha HOM05D000735 ORTHO05D004669 6.5e-10 67.4 64 56.2
PRCOL_00002497 Prasinoderma coloniale HOM05D000735 ORTHO05D004669 1.9e-09 65.9 64 53.1
BcaC08g47521 Brassica carinata HOM05D000735 ORTHO05D004669 5.5e-09 64.3 50 62.0
CBR_g54785 Chara braunii HOM05D000735 ORTHO05D004669 7.9e-08 60.5 64 50.0
SMO364G0202 Selaginella moellendorffii HOM05D000735 ORTHO05D004669 8.8e-07 57.0 68 51.5
Aa31LG4G1360 Aethionema arabicum HOM05D000735 ORTHO05D004669 1.5e-06 56.2 42 71.4
Pp3c9_15590 Physcomitrium patens HOM05D000735 ORTHO05D004669 9.7e-06 53.5 31 83.9
PRCOL_00005087 Prasinoderma coloniale HOM05D000735 ORTHO05D004669 9.7e-06 53.5 65 43.1


User provided reference genes

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