Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_31644 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 3.9e-50 201.1 94 100.0
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 2.7e-11 72.0 53 58.5
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 3.6e-11 71.6 53 62.3
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 6.1e-11 70.9 53 58.5
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 7.9e-11 70.5 53 62.3
AUR62012595 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.0e-10 70.1 48 64.6
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 1.0e-10 70.1 53 60.4
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 1.4e-10 69.7 53 56.6
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 1.4e-10 69.7 53 60.4
TPR.G35071 Trifolium pratense HOM05D004773 ORTHO05D005943 1.4e-10 69.7 54 55.6
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 1.8e-10 69.3 53 58.5
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 1.8e-10 69.3 53 58.5
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 2.3e-10 68.9 53 62.3
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 2.3e-10 68.9 54 55.6
PSO782G1422 Papaver somniferum HOM05D004773 ORTHO05D005943 3.0e-10 68.6 53 58.5
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 3.0e-10 68.6 53 60.4
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 3.9e-10 68.2 53 58.5
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 3.9e-10 68.2 53 58.5
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 3.9e-10 68.2 53 58.5
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 5.1e-10 67.8 53 58.5
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 5.1e-10 67.8 53 58.5
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 5.1e-10 67.8 53 54.7
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 5.1e-10 67.8 53 56.6
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 6.7e-10 67.4 53 58.5
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 6.7e-10 67.4 53 58.5
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 8.8e-10 67.0 53 52.8
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 8.8e-10 67.0 53 56.6
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 8.8e-10 67.0 53 54.7
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 8.8e-10 67.0 53 56.6
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 8.8e-10 67.0 53 56.6
unitig_37.g12340 Utricularia gibba HOM05D004773 ORTHO05D005943 8.8e-10 67.0 63 47.6
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 8.8e-10 67.0 53 56.6
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 8.8e-10 67.0 53 56.6
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 1.1e-09 66.6 53 56.6
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 1.1e-09 66.6 53 56.6
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 1.1e-09 66.6 53 56.6
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 1.1e-09 66.6 53 56.6
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 1.1e-09 66.6 53 54.7
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 1.1e-09 66.6 53 56.6
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 1.1e-09 66.6 53 54.7
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 1.5e-09 66.2 53 56.6
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 1.5e-09 66.2 53 56.6
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.5e-09 66.2 48 60.4
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.5e-09 66.2 48 60.4
Gohir.A11G222000 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.5e-09 66.2 53 56.6
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 1.5e-09 66.2 53 50.9
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 1.5e-09 66.2 53 52.8
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 2.0e-09 65.9 53 54.7
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 2.0e-09 65.9 53 54.7
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 2.0e-09 65.9 53 54.7
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 2.5e-09 65.5 53 52.8
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 2.5e-09 65.5 48 60.4
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 2.5e-09 65.5 53 52.8
VMungo0464G1467 Vigna mungo HOM05D004773 ORTHO05D005943 2.5e-09 65.5 55 47.3
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 3.3e-09 65.1 53 56.6
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 3.3e-09 65.1 53 56.6
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 3.3e-09 65.1 48 58.3
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.3e-09 65.1 54 55.6
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 3.3e-09 65.1 54 51.9
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 3.3e-09 65.1 53 50.9
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.3e-09 64.7 53 56.6
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.3e-09 64.7 53 56.6
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.3e-09 64.7 53 56.6
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 5.7e-09 64.3 48 58.3
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 5.7e-09 64.3 48 58.3
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 5.7e-09 64.3 48 56.2
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 5.7e-09 64.3 48 58.3
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 7.4e-09 63.9 48 60.4
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 7.4e-09 63.9 48 56.2
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 7.4e-09 63.9 48 56.2
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 7.4e-09 63.9 52 57.7
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.4e-09 63.9 52 57.7
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 7.4e-09 63.9 53 52.8
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 7.4e-09 63.9 53 52.8
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 7.4e-09 63.9 53 52.8
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 7.4e-09 63.9 53 54.7
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 9.7e-09 63.5 48 56.2
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 9.7e-09 63.5 52 53.8
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 9.7e-09 63.5 52 57.7
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 9.7e-09 63.5 52 57.7
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 9.7e-09 63.5 48 56.2
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 9.7e-09 63.5 53 54.7
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 1.3e-08 63.2 46 58.7
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 1.3e-08 63.2 53 52.8
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 1.3e-08 63.2 53 52.8
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 1.3e-08 63.2 53 54.7
SMO367G0365 Selaginella moellendorffii HOM05D004773 ORTHO05D005943 1.3e-08 63.2 53 52.8
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 1.7e-08 62.8 53 52.8
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 1.7e-08 62.8 53 52.8
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 1.7e-08 62.8 53 52.8
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.7e-08 62.8 53 54.7
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 1.7e-08 62.8 48 54.2
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 2.2e-08 62.4 48 54.2
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 2.2e-08 62.4 48 54.2
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 2.2e-08 62.4 48 54.2
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 2.2e-08 62.4 52 53.8
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 2.2e-08 62.4 53 54.7
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.2e-08 62.4 53 54.7
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 2.2e-08 62.4 53 54.7
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 2.8e-08 62.0 53 54.7
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 2.8e-08 62.0 53 54.7
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 2.8e-08 62.0 53 54.7
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 2.8e-08 62.0 52 55.8
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 2.8e-08 62.0 53 50.9
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 3.7e-08 61.6 53 50.9
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 3.7e-08 61.6 53 50.9
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 3.7e-08 61.6 53 50.9
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 4.8e-08 61.2 48 58.3
Eucgr.F01964 Eucalyptus grandis HOM05D004773 ORTHO05D005943 4.8e-08 61.2 53 52.8
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.8e-08 61.2 53 54.7
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 4.8e-08 61.2 48 56.2
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.1e-07 60.1 53 52.8
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 1.1e-07 60.1 48 54.2
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 2.4e-07 58.9 53 49.1
BcaC09g47749 Brassica carinata HOM05D004773 ORTHO05D005943 4.1e-07 58.2 54 46.3
BraA01t04577Z Brassica rapa HOM05D004773 ORTHO05D005943 4.1e-07 58.2 54 46.3
AagrBONN_evm.TU.Sc2ySwM_362.2127 Anthoceros agrestis HOM05D004773 ORTHO05D005943 5.3e-07 57.8 52 48.1
PSO063G1994 Papaver somniferum HOM05D004773 ORTHO05D005943 5.3e-07 57.8 53 50.9
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 6.9e-07 57.4 52 48.1
PRCOL_00005876 Prasinoderma coloniale HOM05D004773 ORTHO05D005943 6.9e-07 57.4 54 53.7
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 9.1e-07 57.0 52 48.1
AT3G03500 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 9.1e-07 57.0 52 48.1
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 9.1e-07 57.0 53 47.2
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 1.5e-06 56.2 53 47.2
COL.COLO4_31150 Corchorus olitorius HOM05D004773 ORTHO05D005943 2.0e-06 55.8 53 50.9
A06p26410 Brassica napus HOM05D004773 ORTHO05D005943 2.6e-06 55.5 52 46.2
BNapus_Darmor_BZH_scaffold_162p00180 Brassica napus HOM05D004773 ORTHO05D005943 2.6e-06 55.5 52 46.2
BNapus_Darmor_BZH_scaffold_78p00160 Brassica napus HOM05D004773 ORTHO05D005943 2.6e-06 55.5 52 46.2
BolC1t05828H Brassica oleracea HOM05D004773 ORTHO05D005943 2.6e-06 55.5 52 46.2
Pp3c12_11300 Physcomitrium patens HOM05D004773 ORTHO05D005943 2.6e-06 55.5 44 56.8
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 3.4e-06 55.1 52 46.2
Mapoly0004s0110 Marchantia polymorpha HOM05D004773 ORTHO05D005943 3.4e-06 55.1 53 49.1
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 5.9e-06 54.3 52 44.2
CBR_g32162 Chara braunii HOM05D004773 ORTHO05D001111 7.7e-06 53.9 55 49.1


User provided reference genes

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