Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_31551 Sequoiadendron giganteum HOM05D007800 ORTHO05D009881 0.0e+00 1082.0 552 100.0
CSS0040388 Camellia sinensis var. sinensis HOM05D007800 ORTHO05D009881 3.0e-86 323.6 563 39.4
CSS0047448 Camellia sinensis var. sinensis HOM05D007800 ORTHO05D009881 1.5e-85 321.2 564 39.2
TAR626G0221 Trochodendron aralioides HOM05D007800 ORTHO05D009881 2.6e-85 320.5 567 38.8
MBI01_g01250_MAGBIO Magnolia biondii HOM05D007800 ORTHO05D009881 9.8e-85 318.5 565 36.1
ATR0782G161 Amborella trichopoda HOM05D007800 ORTHO05D009881 8.3e-84 315.5 553 36.2
PSO832G3388 Papaver somniferum HOM05D007800 ORTHO05D009881 3.5e-82 310.1 564 36.7
GSVIVG01015219001 Vitis vinifera HOM05D007800 ORTHO05D009881 1.4e-78 298.1 564 36.3
Nitab4.5_0010222g0010 Nicotiana tabacum HOM05D007800 ORTHO05D009881 1.2e-77 295.0 558 35.3
Aqoxy7G01245 Aquilegia oxysepala HOM05D007800 ORTHO05D009881 1.5e-77 294.7 579 35.2
Prupe.7G211900 Prunus persica HOM05D007800 ORTHO05D009881 1.5e-77 294.7 561 36.0
QL02p062921 Quercus lobata HOM05D007800 ORTHO05D009881 5.8e-77 292.7 561 35.8
CANSAT56G2700 Cannabis sativa HOM05D007800 ORTHO05D009881 7.5e-77 292.4 565 34.9
Hma1.2p1_0800F.1_g220040 Hydrangea macrophylla HOM05D007800 ORTHO05D009881 1.7e-76 291.2 559 35.2
Lsat_1_v5_gn_7_37520 Lactuca sativa HOM05D007800 ORTHO05D009881 2.2e-76 290.8 561 34.0
Haze_25896 Corylus avellana HOM05D007800 ORTHO05D009881 3.7e-76 290.0 563 36.2
Cfa003104 Carpinus fangiana HOM05D007800 ORTHO05D009881 1.4e-75 288.1 563 34.5
Cpa.g.sc93.18 Carica papaya HOM05D007800 ORTHO05D009881 3.2e-75 287.0 569 34.8
Oeu018234.1 Olea europaea HOM05D007800 ORTHO05D009881 3.2e-75 287.0 545 34.3
Duzib150G1500 Durio zibethinus HOM05D007800 ORTHO05D009881 1.2e-74 285.0 559 35.4
Potri.006G151500 Populus trichocarpa HOM05D007800 ORTHO05D009881 2.0e-74 284.3 563 34.8
Nitab4.5_0010434g0010 Nicotiana tabacum HOM05D007800 ORTHO05D009881 3.5e-74 283.5 560 35.4
Eucgr.C00905 Eucalyptus grandis HOM05D007800 ORTHO05D009881 6.0e-74 282.7 562 35.6
MD02G1076500 Malus domestica HOM05D007800 ORTHO05D009881 1.0e-73 282.0 562 36.1
Actinidia03799 Actinidia chinensis HOM05D007800 ORTHO05D009881 3.0e-73 280.4 560 34.3
Gorai.010G081900 Gossypium raimondii HOM05D007800 ORTHO05D009881 1.5e-72 278.1 566 33.0
Dinv36755 Davidia involucrata HOM05D007800 ORTHO05D009881 3.3e-72 276.9 557 35.2
Gohir.A06G071700 Gossypium hirsutum HOM05D007800 ORTHO05D009881 4.3e-72 276.6 567 33.2
Sabra06G0120000 Salix brachista HOM05D007800 ORTHO05D009881 4.3e-72 276.6 563 34.5
TWI32G0405 Tripterygium wilfordii HOM05D007800 ORTHO05D009881 9.5e-72 275.4 560 34.1
HanXRQChr03g0060771 Helianthus annuus HOM05D007800 ORTHO05D009881 1.2e-71 275.0 561 33.9
RcHm_v2.0_Chr2g0093101 Rosa chinensis HOM05D007800 ORTHO05D009881 2.1e-71 274.2 566 33.0
Ciclev10010231m.g Citrus clementina HOM05D007800 ORTHO05D009881 2.8e-71 273.9 564 34.0
COL.COLO4_18216 Corchorus olitorius HOM05D007800 ORTHO05D009881 1.1e-70 271.9 484 36.4
Peaxi162Scf00141g00327 Petunia axillaris HOM05D007800 ORTHO05D009881 1.1e-70 271.9 556 33.6
FvH4_1g07200 Fragaria vesca HOM05D007800 ORTHO05D009881 5.2e-70 269.6 561 33.2
Migut.K00591 Erythranthe guttata HOM05D007800 ORTHO05D009881 2.6e-69 267.3 560 30.7
C03p89220 Brassica napus HOM05D007800 ORTHO05D009881 7.5e-69 265.8 564 32.3
BolC3t21231H Brassica oleracea HOM05D007800 ORTHO05D009881 9.8e-69 265.4 564 33.2
A08p19590 Brassica napus HOM05D007800 ORTHO05D009881 1.7e-68 264.6 564 31.9
MSTRG.19524 Avicennia marina HOM05D007800 ORTHO05D009881 3.7e-68 263.5 563 33.4
ECA240G1450 Erigeron canadensis HOM05D007800 ORTHO05D009881 3.7e-68 263.5 575 33.7
PGR142G2964 Punica granatum HOM05D007800 ORTHO05D009881 3.7e-68 263.5 562 32.7
BraA08t33918Z Brassica rapa HOM05D007800 ORTHO05D009881 8.3e-68 262.3 567 30.9
Sopen07g014250 Solanum pennellii HOM05D007800 ORTHO05D009881 1.1e-67 261.9 557 34.3
BcaC01g01177 Brassica carinata HOM05D007800 ORTHO05D009881 1.9e-67 261.2 564 31.9
PGSC0003DMG400002319 Solanum tuberosum HOM05D007800 ORTHO05D009881 1.9e-67 261.2 559 33.5
Thhalv10027131m.g Eutrema salsugineum HOM05D007800 ORTHO05D009881 1.2e-66 258.5 580 31.4
Cc06_g11240 Coffea canephora HOM05D007800 ORTHO05D009881 2.1e-66 257.7 565 31.5
Manes.16G103100 Manihot esculenta HOM05D007800 ORTHO05D009881 4.6e-66 256.5 475 36.6
SGA_v2.0_scaffold23G09996 Striga asiatica HOM05D007800 ORTHO05D009881 7.8e-66 255.8 564 31.9
Carub.0007s1100 Capsella rubella HOM05D007800 ORTHO05D009881 1.3e-65 255.0 567 33.3
BcaB03g12612 Brassica carinata HOM05D007800 ORTHO05D009881 2.3e-65 254.2 564 31.6
FAN23G2336 Fragaria x ananassa HOM05D007800 ORTHO05D009881 2.3e-65 254.2 545 32.3
FAN19G0334 Fragaria x ananassa HOM05D007800 ORTHO05D009881 5.1e-65 253.1 545 31.7
Solyc07g026640.3 Solanum lycopersicum HOM05D007800 ORTHO05D009881 3.3e-64 250.4 553 32.4
CARHR237380 Cardamine hirsuta HOM05D007800 ORTHO05D009881 7.3e-64 249.2 564 31.4
CiPaw.03G217600 Carya illinoinensis HOM05D007800 ORTHO05D009881 9.5e-64 248.8 561 33.0
AL7G22820 Arabidopsis lyrata HOM05D007800 ORTHO05D009881 2.1e-63 247.7 566 31.4
THA.LOC104801881 Tarenaya hassleriana HOM05D007800 ORTHO05D009881 2.8e-63 247.3 563 31.6
AT4G29560 Arabidopsis thaliana HOM05D007800 ORTHO05D009881 1.1e-62 245.4 564 31.9
Sc08g0008380 Simmondsia chinensis HOM05D007800 ORTHO05D009881 1.1e-62 245.4 566 32.5
HPP92_005239 Vanilla planifolia HOM05D007800 ORTHO05D009881 2.3e-62 244.2 568 32.6
Mapoly0036s0155 Marchantia polymorpha HOM05D007800 ORTHO05D009881 2.0e-61 241.1 488 33.6
Atru.BG.11.p Acer truncatum HOM05D007800 ORTHO05D009881 7.6e-61 239.2 478 35.1
Nn8g38899 Nelumbo nucifera HOM05D007800 ORTHO05D009881 9.9e-61 238.8 472 34.7
FAN28G0657 Fragaria x ananassa HOM05D007800 ORTHO05D009881 3.3e-56 223.8 301 43.9
PSO063G3968 Papaver somniferum HOM05D007800 ORTHO05D009881 9.6e-56 222.2 476 32.1
SalBow1G2412 Salvia bowleyana HOM05D007800 ORTHO05D009881 1.5e-53 214.9 502 29.3
Thecc.09G091400 Theobroma cacao HOM05D007800 ORTHO05D009881 2.3e-49 201.1 466 31.3
DCAR_010680 Daucus carota HOM05D007800 ORTHO05D009881 8.7e-49 199.1 472 30.1
TWI32G0422 Tripterygium wilfordii HOM05D007800 ORTHO05D009881 1.1e-46 192.2 471 30.8
FAN26G1329 Fragaria x ananassa HOM05D007800 ORTHO05D009881 5.3e-46 189.9 464 29.5
Os06g0573800 Oryza sativa ssp. japonica HOM05D007800 ORTHO05D009881 1.2e-45 188.7 492 29.7
FAN26G3078 Fragaria x ananassa HOM05D007800 ORTHO05D009881 1.5e-45 188.3 464 29.3
Zm00001eb385220 Zea mays HOM05D007800 ORTHO05D009881 4.9e-44 183.3 476 28.4
Lj7P673T61 Lonicera japonica HOM05D007800 ORTHO05D009881 4.2e-43 180.3 233 42.5
Pp3c4_16520 Physcomitrium patens HOM05D007800 ORTHO05D009881 1.1e-38 165.6 451 30.4
AagrBONN_evm.TU.Sc2ySwM_344.183 Anthoceros agrestis HOM05D007800 ORTHO05D009881 1.7e-36 158.3 563 27.7
MD15G1205200 Malus domestica HOM05D007800 ORTHO05D009881 1.6e-34 151.8 536 26.3
Gohir.D06G070300 Gossypium hirsutum HOM05D007800 ORTHO05D009881 3.0e-33 147.5 422 28.0
CBR_g17901 Chara braunii HOM05D007800 ORTHO05D009881 1.2e-13 82.4 729 21.1
Dinv42307 Davidia involucrata HOM05D007800 ORTHO05D009881 2.2e-12 78.2 100 46.0
SMO353G0419 Selaginella moellendorffii HOM05D001821 ORTHO05D001778 8.5e-12 76.3 94 41.5
CDE05G3378 Ceratophyllum demersum HOM05D007800 ORTHO05D009881 2.5e-11 74.7 142 32.4
FAN28G2802 Fragaria x ananassa HOM05D007800 ORTHO05D009881 2.7e-10 71.2 165 29.1
SMO302G0010 Selaginella moellendorffii HOM05D001821 ORTHO05D001778 5.1e-09 67.0 90 37.8


User provided reference genes

Program Settings