Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_31513 Sequoiadendron giganteum HOM05D003055 ORTHO05D004002 1.5e-189 666.0 330 100.0
Mapoly0113s0057 Marchantia polymorpha HOM05D003055 ORTHO05D004002 2.2e-31 140.6 129 60.5
SEGI_13785 Sequoiadendron giganteum HOM05D003055 ORTHO05D004002 1.2e-29 134.8 128 53.9
Sabra10G0189700 Salix brachista HOM05D003055 ORTHO05D004002 3.9e-28 129.8 128 50.8
SMO118G0011 Selaginella moellendorffii HOM05D003055 ORTHO05D004002 6.6e-28 129.0 129 55.8
Aqoxy1G00661 Aquilegia oxysepala HOM05D003055 ORTHO05D004002 1.1e-27 128.3 128 51.6
Potri.010G242700 Populus trichocarpa HOM05D003055 ORTHO05D004002 1.9e-27 127.5 128 50.8
MBI19_g27265_MAGBIO Magnolia biondii HOM05D003055 ORTHO05D004002 5.6e-27 125.9 128 50.8
Potri.008G018300 Populus trichocarpa HOM05D003055 ORTHO05D004002 5.6e-27 125.9 126 51.6
TAR623G0671 Trochodendron aralioides HOM05D003055 ORTHO05D004002 7.3e-27 125.6 125 52.0
GSVIVG01033955001 Vitis vinifera HOM05D003055 ORTHO05D004002 1.2e-26 124.8 129 51.9
CiPaw.13G043700 Carya illinoinensis HOM05D003055 ORTHO05D004002 1.6e-26 124.4 128 50.8
Nn6g34695 Nelumbo nucifera HOM05D003055 ORTHO05D004002 2.1e-26 124.0 128 52.3
Cc02_g09370 Coffea canephora HOM05D003055 ORTHO05D004002 3.6e-26 123.2 129 51.9
GSVIVG01034626001 Vitis vinifera HOM05D003055 ORTHO05D004002 4.7e-26 122.9 129 49.6
Oeu009249.1 Olea europaea HOM05D003055 ORTHO05D004002 6.2e-26 122.5 127 52.0
CiPaw.14G034900 Carya illinoinensis HOM05D003055 ORTHO05D004002 8.1e-26 122.1 128 49.2
TAR369G0320 Trochodendron aralioides HOM05D003055 ORTHO05D004002 1.1e-25 121.7 129 50.4
Cfa010523 Carpinus fangiana HOM05D003055 ORTHO05D004002 1.4e-25 121.3 128 50.0
FAN06G0541 Fragaria x ananassa HOM05D003055 ORTHO05D004002 1.4e-25 121.3 131 48.1
Prupe.1G550400 Prunus persica HOM05D003055 ORTHO05D004002 1.4e-25 121.3 129 49.6
SalBow3G3414 Salvia bowleyana HOM05D003055 ORTHO05D004002 1.4e-25 121.3 129 48.8
GSVIVG01034624001 Vitis vinifera HOM05D003055 ORTHO05D004002 1.4e-25 121.3 129 49.6
ATR0037G030 Amborella trichopoda HOM05D003055 ORTHO05D004002 2.3e-25 120.6 128 50.8
CSS0036043 Camellia sinensis var. sinensis HOM05D003055 ORTHO05D004002 2.3e-25 120.6 128 50.8
CANSAT56G0108 Cannabis sativa HOM05D003055 ORTHO05D004002 2.3e-25 120.6 128 50.0
Hma1.2p1_0926F.1_g237540 Hydrangea macrophylla HOM05D003055 ORTHO05D004002 2.3e-25 120.6 128 50.8
Dinv08584 Davidia involucrata HOM05D003055 ORTHO05D004002 3.1e-25 120.2 129 50.4
FvH4_7g05380 Fragaria vesca HOM05D003055 ORTHO05D004002 5.2e-25 119.4 129 48.1
FAN07G0736 Fragaria x ananassa HOM05D003055 ORTHO05D004002 5.2e-25 119.4 129 48.1
Sed0007836 Sechium edule HOM05D003055 ORTHO05D004002 5.2e-25 119.4 129 48.8
AT3G10640 Arabidopsis thaliana HOM05D003055 ORTHO05D004002 6.8e-25 119.0 128 49.2
ClCG05G021950 Citrullus lanatus HOM05D003055 ORTHO05D004002 6.8e-25 119.0 129 48.8
Actinidia31111 Actinidia chinensis HOM05D003055 ORTHO05D004002 8.9e-25 118.6 129 51.9
Manes.10G060100 Manihot esculenta HOM05D003055 ORTHO05D004002 8.9e-25 118.6 129 48.1
Nn2g14302 Nelumbo nucifera HOM05D003055 ORTHO05D004002 8.9e-25 118.6 126 50.8
CARHR085220 Cardamine hirsuta HOM05D003055 ORTHO05D004002 1.2e-24 118.2 128 49.2
MELO3C004965.2 Cucumis melo HOM05D003055 ORTHO05D004002 1.2e-24 118.2 129 48.1
Lalb_Chr06g0169871 Lupinus albus HOM05D003055 ORTHO05D004002 1.2e-24 118.2 128 50.0
HPP92_020108 Vanilla planifolia HOM05D003055 ORTHO05D004002 1.2e-24 118.2 129 49.6
Migut.F00845 Erythranthe guttata HOM05D003055 ORTHO05D004002 1.5e-24 117.9 128 49.2
Pp3c27_2180 Physcomitrium patens HOM05D003055 ORTHO05D004002 1.5e-24 117.9 127 52.8
Pp3c27_2240 Physcomitrium patens HOM05D003055 ORTHO05D004002 1.5e-24 117.9 127 52.8
Sabra08G0011900 Salix brachista HOM05D003055 ORTHO05D004002 1.5e-24 117.9 126 49.2
CDE08G0531 Ceratophyllum demersum HOM05D003055 ORTHO05D004002 2.0e-24 117.5 128 46.9
FAN01G0006 Fragaria x ananassa HOM05D003055 ORTHO05D004002 2.0e-24 117.5 129 47.3
RcHm_v2.0_Chr1g0331931 Rosa chinensis HOM05D003055 ORTHO05D004002 2.0e-24 117.5 129 47.3
Solyc11g006500.2 Solanum lycopersicum HOM05D003055 ORTHO05D004002 2.0e-24 117.5 128 50.0
Sopen11g002390 Solanum pennellii HOM05D003055 ORTHO05D004002 2.0e-24 117.5 128 50.0
PGSC0003DMG402001984 Solanum tuberosum HOM05D003055 ORTHO05D004002 2.0e-24 117.5 128 50.0
Lsat_1_v5_gn_2_105880 Lactuca sativa HOM05D003055 ORTHO05D004002 2.6e-24 117.1 128 46.9
MSTRG.9034 Avicennia marina HOM05D003055 ORTHO05D004002 3.4e-24 116.7 129 48.1
A03p01880 Brassica napus HOM05D003055 ORTHO05D004002 3.4e-24 116.7 130 48.5
MD15G1404000 Malus domestica HOM05D003055 ORTHO05D004002 3.4e-24 116.7 129 48.8
Carub.0003s0987 Capsella rubella HOM05D003055 ORTHO05D004002 4.4e-24 116.3 128 47.7
Lj5g0005985 Lotus japonicus HOM05D003055 ORTHO05D004002 4.4e-24 116.3 131 49.6
SEGI_27553 Sequoiadendron giganteum HOM05D002535 ORTHO05D008858 4.4e-24 116.3 104 59.6
SEGI_29257 Sequoiadendron giganteum HOM05D002535 ORTHO05D008858 4.4e-24 116.3 104 59.6
C03p02250 Brassica napus HOM05D003055 ORTHO05D004002 5.8e-24 115.9 130 47.7
BolC3t12776H Brassica oleracea HOM05D003055 ORTHO05D004002 5.8e-24 115.9 130 47.7
Thhalv10021438m.g Eutrema salsugineum HOM05D003055 ORTHO05D004002 5.8e-24 115.9 128 50.0
Lj2A35T41 Lonicera japonica HOM05D003055 ORTHO05D004002 5.8e-24 115.9 129 49.6
MD08G1216900 Malus domestica HOM05D003055 ORTHO05D004002 5.8e-24 115.9 129 48.1
THA.LOC104816475 Tarenaya hassleriana HOM05D003055 ORTHO05D004002 5.8e-24 115.9 129 48.1
Lj3C923T8 Lonicera japonica HOM05D003055 ORTHO05D004002 7.5e-24 115.5 129 47.3
PSO339G4912 Papaver somniferum HOM05D003055 ORTHO05D004002 7.5e-24 115.5 128 50.0
PSO384G0200 Papaver somniferum HOM05D003055 ORTHO05D004002 7.5e-24 115.5 128 50.0
Phvul.007G137700 Phaseolus vulgaris HOM05D003055 ORTHO05D004002 7.5e-24 115.5 129 48.8
AL3G22110 Arabidopsis lyrata HOM05D003055 ORTHO05D004002 9.8e-24 115.2 128 48.4
vmacro10323 Vaccinium macrocarpon HOM05D003055 ORTHO05D004002 9.8e-24 115.2 116 51.7
CAN.G143.38 Capsicum annuum HOM05D003055 ORTHO05D004002 1.3e-23 114.8 129 50.4
ECA238G1602 Erigeron canadensis HOM05D003055 ORTHO05D004002 1.3e-23 114.8 128 46.9
Nitab4.5_0000687g0220 Nicotiana tabacum HOM05D003055 ORTHO05D004002 1.3e-23 114.8 129 48.1
Sp3g08950 Schrenkiella parvula HOM05D003055 ORTHO05D004002 1.3e-23 114.8 128 48.4
VMungo0720G1868 Vigna mungo HOM05D003055 ORTHO05D004002 1.3e-23 114.8 130 50.0
ECA232G4887 Erigeron canadensis HOM05D003055 ORTHO05D004002 1.7e-23 114.4 128 46.9
HanXRQChr05g0162021 Helianthus annuus HOM05D003055 ORTHO05D004002 1.7e-23 114.4 128 46.1
Os01g0103000 Oryza sativa ssp. japonica HOM05D003055 ORTHO05D004002 2.2e-23 114.0 128 50.8
Sp6g37980 Schrenkiella parvula HOM05D003055 ORTHO05D004002 2.2e-23 114.0 129 48.1
AT5G04850 Arabidopsis thaliana HOM05D003055 ORTHO05D004002 2.9e-23 113.6 128 47.7
HanXRQChr05g0146171 Helianthus annuus HOM05D003055 ORTHO05D004002 2.9e-23 113.6 128 46.9
Peaxi162Scf00519g00041 Petunia axillaris HOM05D003055 ORTHO05D004002 2.9e-23 113.6 129 47.3
arahy.Tifrunner.gnm1.ann1.3L4KIC Arachis hypogaea HOM05D003055 ORTHO05D004002 3.7e-23 113.2 129 48.1
arahy.Tifrunner.gnm1.ann1.V7K45W Arachis hypogaea HOM05D003055 ORTHO05D004002 3.7e-23 113.2 129 48.1
CBR_g38017 Chara braunii HOM05D003055 ORTHO05D004002 3.7e-23 113.2 134 48.5
Sed0009816 Sechium edule HOM05D003055 ORTHO05D004002 3.7e-23 113.2 128 47.7
BcaC06g32192 Brassica carinata HOM05D003055 ORTHO05D004002 4.9e-23 112.8 131 47.3
HanXRQChr02g0053561 Helianthus annuus HOM05D003055 ORTHO05D004002 4.9e-23 112.8 128 46.1
Actinidia34062 Actinidia chinensis HOM05D003055 ORTHO05D004002 6.4e-23 112.5 134 49.3
Aa31LG11G5860 Aethionema arabicum HOM05D003055 ORTHO05D004002 6.4e-23 112.5 128 49.2
Glyma.10G195600 Glycine max HOM05D003055 ORTHO05D004002 6.4e-23 112.5 129 47.3
Lalb_Chr02g0150941 Lupinus albus HOM05D003055 ORTHO05D004002 6.4e-23 112.5 128 50.0
Os05g0102900 Oryza sativa ssp. japonica HOM05D003055 ORTHO05D004002 6.4e-23 112.5 128 46.9
Sc09g0005090 Simmondsia chinensis HOM05D003055 ORTHO05D004002 6.4e-23 112.5 128 47.7
CDE06G1856 Ceratophyllum demersum HOM05D003055 ORTHO05D004002 8.3e-23 112.1 128 46.1
Duzib106G1693 Durio zibethinus HOM05D003055 ORTHO05D004002 8.3e-23 112.1 130 50.0
CAN.G1433.3 Capsicum annuum HOM05D003055 ORTHO05D004002 1.1e-22 111.7 129 47.3
Nitab4.5_0001781g0200 Nicotiana tabacum HOM05D003055 ORTHO05D004002 1.1e-22 111.7 129 50.4
unitig_748.g8765 Utricularia gibba HOM05D003055 ORTHO05D004002 1.1e-22 111.7 130 50.0
A10p31330 Brassica napus HOM05D003055 ORTHO05D004002 1.4e-22 111.3 131 46.6
C09p71970 Brassica napus HOM05D003055 ORTHO05D004002 1.4e-22 111.3 131 46.6
Ca_10428_v3 Cicer arietinum L. HOM05D003055 ORTHO05D004002 1.4e-22 111.3 131 48.9
DCAR_011995 Daucus carota HOM05D003055 ORTHO05D004002 1.4e-22 111.3 144 45.8
TPR.G37809 Trifolium pratense HOM05D003055 ORTHO05D004002 1.4e-22 111.3 133 48.9
Carub.0006s0376 Capsella rubella HOM05D003055 ORTHO05D004002 1.9e-22 110.9 128 46.9
Medtr1g090490 Medicago truncatula HOM05D003055 ORTHO05D004002 1.9e-22 110.9 129 48.1
Nitab4.5_0009933g0030 Nicotiana tabacum HOM05D003055 ORTHO05D004002 1.9e-22 110.9 129 49.6
Peaxi162Scf00120g01529 Petunia axillaris HOM05D003055 ORTHO05D004002 2.4e-22 110.5 129 48.1
QL04p047928 Quercus lobata HOM05D003055 ORTHO05D004002 3.2e-22 110.2 129 48.1
QL04p047935 Quercus lobata HOM05D003055 ORTHO05D004002 3.2e-22 110.2 129 48.1
Lsat_1_v5_gn_0_21121 Lactuca sativa HOM05D003055 ORTHO05D004002 4.1e-22 109.8 128 45.3
AL6G14520 Arabidopsis lyrata HOM05D003055 ORTHO05D004002 5.4e-22 109.4 128 46.1
Rhsim03G0096100 Rhododendron simsii HOM05D003055 ORTHO05D004002 5.4e-22 109.4 128 46.1
TWI63G0716 Tripterygium wilfordii HOM05D003055 ORTHO05D004002 5.4e-22 109.4 129 46.5
Ciclev10016516m.g Citrus clementina HOM05D003055 ORTHO05D004002 7.1e-22 109.0 129 48.1
Thhalv10014559m.g Eutrema salsugineum HOM05D003055 ORTHO05D004002 7.1e-22 109.0 128 46.1
Rhsim09G0140900 Rhododendron simsii HOM05D003055 ORTHO05D004002 7.1e-22 109.0 114 49.1
Atru.chr12.1074 Acer truncatum HOM05D003055 ORTHO05D004002 9.2e-22 108.6 129 47.3
A03p36660 Brassica napus HOM05D003055 ORTHO05D004002 9.2e-22 108.6 128 46.9
C03p44300 Brassica napus HOM05D003055 ORTHO05D004002 9.2e-22 108.6 128 47.7
PGSC0003DMG400023399 Solanum tuberosum HOM05D003055 ORTHO05D004002 1.2e-21 108.2 128 45.3
BcaC01g04169 Brassica carinata HOM05D003055 ORTHO05D004002 2.1e-21 107.5 128 46.9
BolC3t16700H Brassica oleracea HOM05D003055 ORTHO05D004002 2.1e-21 107.5 128 46.9
BraA03t12830Z Brassica rapa HOM05D003055 ORTHO05D004002 2.1e-21 107.5 128 46.9
TWI38G0789 Tripterygium wilfordii HOM05D003055 ORTHO05D004002 2.1e-21 107.5 129 45.7
COL.COLO4_07818 Corchorus olitorius HOM05D003055 ORTHO05D004002 2.7e-21 107.1 130 47.7
Psat6g171920 Pisum sativum HOM05D003055 ORTHO05D004002 2.7e-21 107.1 131 45.8
Thecc.10G117200 Theobroma cacao HOM05D003055 ORTHO05D004002 2.7e-21 107.1 131 47.3
BolC9t59944H Brassica oleracea HOM05D003055 ORTHO05D004002 3.5e-21 106.7 132 44.7
Solyc05g055170.3 Solanum lycopersicum HOM05D003055 ORTHO05D004002 3.5e-21 106.7 129 45.7
Sopen05g033590 Solanum pennellii HOM05D003055 ORTHO05D004002 3.5e-21 106.7 129 45.7
MELO3C012333.2 Cucumis melo HOM05D003055 ORTHO05D004002 6.0e-21 105.9 154 40.3
Gohir.A05G287100 Gossypium hirsutum HOM05D003055 ORTHO05D004002 6.0e-21 105.9 130 46.2
Gohir.D10G203800 Gossypium hirsutum HOM05D003055 ORTHO05D004002 7.8e-21 105.5 128 48.4
Zm00001eb126990 Zea mays HOM05D003055 ORTHO05D004002 7.8e-21 105.5 130 49.2
Zm00001eb267590 Zea mays HOM05D003055 ORTHO05D004002 7.8e-21 105.5 128 46.9
Gohir.A10G196700 Gossypium hirsutum HOM05D003055 ORTHO05D004002 1.0e-20 105.1 128 45.3
Hund06807 Selenicereus undatus HOM05D003055 ORTHO05D004002 1.0e-20 105.1 131 48.1
Gohir.D05G288200 Gossypium hirsutum HOM05D003055 ORTHO05D004002 1.3e-20 104.8 130 45.4
Gorai.009G303200 Gossypium raimondii HOM05D003055 ORTHO05D004002 1.7e-20 104.4 131 45.0
Eucgr.J00289 Eucalyptus grandis HOM05D003055 ORTHO05D004002 2.3e-20 104.0 128 46.1
Gorai.011G228600 Gossypium raimondii HOM05D003055 ORTHO05D004002 2.3e-20 104.0 128 47.7
BcaNung05152 Brassica carinata HOM05D003055 ORTHO05D004002 3.0e-20 103.6 115 45.2
FAN10G0605 Fragaria x ananassa HOM05D003055 ORTHO05D004002 3.9e-20 103.2 109 49.5
BcaB01g05917 Brassica carinata HOM05D003055 ORTHO05D004002 6.6e-20 102.4 129 45.7
AUR62034167 Chenopodium quinoa HOM05D003055 ORTHO05D004002 1.9e-19 100.9 128 45.3
AUR62034489 Chenopodium quinoa HOM05D003055 ORTHO05D004002 1.9e-19 100.9 128 45.3
Cpa.g.sc694.2 Carica papaya HOM05D003055 ORTHO05D004002 4.3e-19 99.8 103 50.5
Haze_03463 Corylus avellana HOM05D003055 ORTHO05D004002 4.3e-19 99.8 179 36.3
Ah.04g162540 Amaranthus hybridus HOM05D003055 ORTHO05D004002 5.6e-19 99.4 128 47.7
CARHR208430 Cardamine hirsuta HOM05D003055 ORTHO05D004002 9.5e-19 98.6 128 44.5
vmacro07271 Vaccinium macrocarpon HOM05D003055 ORTHO05D004002 2.8e-18 97.1 159 39.6
EL10Ac4g08721 Beta vulgaris HOM05D003055 ORTHO05D004002 3.6e-18 96.7 131 48.1
Nn8g39931 Nelumbo nucifera HOM05D003055 ORTHO05D004002 2.3e-17 94.0 104 49.0
SGA_v2.0_scaffold278G46757 Striga asiatica HOM05D003055 ORTHO05D004002 6.8e-17 92.4 141 41.1
PGR044G1056 Punica granatum HOM05D003055 ORTHO05D004002 4.4e-16 89.7 160 38.8
MCO07G102 Micromonas commoda HOM05D003055 ORTHO05D004002 9.9e-16 88.6 116 44.8
MBI19_g44564_MAGBIO Magnolia biondii HOM05D003055 ORTHO05D004002 2.9e-15 87.0 121 42.1
AagrBONN_evm.TU.Sc2ySwM_362.2861 Anthoceros agrestis HOM05D003055 ORTHO05D004002 5.4e-14 82.8 61 68.9
PRCOL_00000670 Prasinoderma coloniale HOM05D003055 ORTHO05D004002 1.0e-12 78.6 105 42.9
Lsat_1_v5_gn_0_22560 Lactuca sativa HOM05D003055 ORTHO05D004002 1.3e-12 78.2 95 42.1
Hund22266 Selenicereus undatus HOM05D003055 ORTHO05D004002 2.3e-12 77.4 101 44.6
Nitab4.5_0011469g0020 Nicotiana tabacum HOM05D003055 ORTHO05D004002 8.6e-12 75.5 73 50.7
Duzib114G0839 Durio zibethinus HOM05D003055 ORTHO05D004002 1.5e-11 74.7 101 44.6
BraA03t09558Z Brassica rapa HOM05D003055 ORTHO05D004002 1.4e-09 68.2 61 54.1
Cre13.g577950 Chlamydomonas reinhardtii HOM05D003055 ORTHO05D004002 1.8e-09 67.8 98 41.8
ATR0772G188 Amborella trichopoda HOM05D003055 ORTHO05D004002 8.9e-09 65.5 113 34.5
Lsat_1_v5_gn_0_42020 Lactuca sativa HOM05D003055 ORTHO05D004002 2.0e-08 64.3 97 34.0
Lsat_1_v5_gn_3_109540 Lactuca sativa HOM05D003055 ORTHO05D004002 2.6e-08 63.9 99 34.3
Lsat_1_v5_gn_0_39180 Lactuca sativa HOM05D003055 ORTHO05D004002 9.9e-08 62.0 97 36.1
Eucgr.D00632 Eucalyptus grandis HOM05D002535 ORTHO05D008858 3.8e-07 60.1 73 38.4
Lsat_1_v5_gn_1_80080 Lactuca sativa HOM05D003055 ORTHO05D004002 3.8e-07 60.1 121 31.4
Actinidia34733 Actinidia chinensis HOM05D003055 ORTHO05D004002 6.4e-07 59.3 68 51.5
Lalb_Chr21g0312801 Lupinus albus HOM05D003055 ORTHO05D004002 8.4e-07 58.9 57 43.9
Aqoxy1G02517 Aquilegia oxysepala HOM05D002535 ORTHO05D008858 1.1e-06 58.5 78 35.9
Cfa027048 Carpinus fangiana HOM05D003055 ORTHO05D004002 1.4e-06 58.2 68 44.1
HPP92_020872 Vanilla planifolia HOM05D002535 ORTHO05D008858 1.4e-06 58.2 81 35.8
Pp3c16_16920 Physcomitrium patens HOM05D003055 ORTHO05D004002 1.9e-06 57.8 100 37.0
Nn1g04049 Nelumbo nucifera HOM05D002535 ORTHO05D008858 2.4e-06 57.4 87 32.2
HPP92_028115 Vanilla planifolia HOM05D002535 ORTHO05D008858 3.2e-06 57.0 73 37.0
PSO675G0269 Papaver somniferum HOM05D002535 ORTHO05D008858 7.1e-06 55.8 73 38.4
TPR.G12122 Trifolium pratense HOM05D002535 ORTHO05D008858 7.1e-06 55.8 73 35.6
Pp3c17_13780 Physcomitrium patens HOM05D002535 ORTHO05D008858 9.3e-06 55.5 77 40.3
Pp3c17_13784 Physcomitrium patens HOM05D002535 ORTHO05D008858 9.3e-06 55.5 77 40.3


User provided reference genes

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