Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 1.5e-80 302.8 147 100.0
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 6.3e-31 137.9 90 65.6
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 8.2e-31 137.5 93 66.7
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 1.8e-30 136.3 90 64.4
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 2.4e-30 136.0 90 66.7
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 7.0e-30 134.4 90 64.4
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 9.1e-30 134.0 90 62.2
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 9.1e-30 134.0 90 64.4
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 1.2e-29 133.7 90 65.6
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.2e-29 133.7 90 65.6
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.2e-29 133.7 90 65.6
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.2e-29 133.7 90 65.6
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 1.6e-29 133.3 90 64.4
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.6e-29 133.3 90 64.4
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 1.6e-29 133.3 90 66.7
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 2.0e-29 132.9 90 64.4
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 2.0e-29 132.9 90 66.7
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 2.0e-29 132.9 90 65.6
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 2.7e-29 132.5 134 50.7
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 2.7e-29 132.5 90 63.3
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 3.5e-29 132.1 90 65.6
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 5.9e-29 131.3 90 63.3
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 7.7e-29 131.0 90 65.6
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 1.0e-28 130.6 90 63.3
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 1.0e-28 130.6 90 62.2
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 1.3e-28 130.2 90 66.7
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 1.7e-28 129.8 90 63.3
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 1.7e-28 129.8 90 65.6
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 2.2e-28 129.4 90 65.6
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 3.8e-28 128.6 90 63.3
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 3.8e-28 128.6 90 65.6
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 3.8e-28 128.6 90 64.4
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 3.8e-28 128.6 90 64.4
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 3.8e-28 128.6 90 62.2
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 5.0e-28 128.3 90 61.1
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 5.0e-28 128.3 90 65.6
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 5.0e-28 128.3 90 62.2
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 6.5e-28 127.9 90 63.3
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 6.5e-28 127.9 90 61.1
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 8.5e-28 127.5 90 62.2
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 1.1e-27 127.1 90 63.3
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 1.1e-27 127.1 90 63.3
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 1.5e-27 126.7 90 61.1
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 1.9e-27 126.3 90 64.4
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 1.9e-27 126.3 90 64.4
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 2.5e-27 125.9 94 58.5
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 2.5e-27 125.9 90 61.1
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 3.2e-27 125.6 90 62.2
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 3.2e-27 125.6 90 61.1
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 4.2e-27 125.2 90 62.2
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 4.2e-27 125.2 88 63.6
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 4.2e-27 125.2 90 60.0
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 4.2e-27 125.2 90 65.6
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 5.5e-27 124.8 90 62.2
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 5.5e-27 124.8 90 60.0
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 7.2e-27 124.4 90 63.3
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 7.2e-27 124.4 90 61.1
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 7.2e-27 124.4 90 61.1
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 7.2e-27 124.4 90 63.3
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 7.2e-27 124.4 90 62.2
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 9.4e-27 124.0 90 61.1
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 9.4e-27 124.0 90 63.3
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 1.6e-26 123.2 90 58.9
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 1.6e-26 123.2 133 47.4
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 1.6e-26 123.2 90 64.4
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 2.1e-26 122.9 90 60.0
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 2.7e-26 122.5 90 61.1
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 3.6e-26 122.1 90 60.0
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 3.6e-26 122.1 90 60.0
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 3.6e-26 122.1 90 60.0
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 3.6e-26 122.1 90 57.8
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 4.7e-26 121.7 90 61.1
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 4.7e-26 121.7 139 47.5
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 6.1e-26 121.3 90 60.0
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 6.1e-26 121.3 90 62.2
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 8.0e-26 120.9 114 53.5
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 8.0e-26 120.9 90 57.8
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 8.0e-26 120.9 90 60.0
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 8.0e-26 120.9 86 59.3
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 8.0e-26 120.9 90 61.1
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 8.0e-26 120.9 85 64.7
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 1.0e-25 120.6 90 61.1
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 1.0e-25 120.6 90 60.0
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 1.4e-25 120.2 90 62.2
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 1.4e-25 120.2 114 53.5
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.8e-25 119.8 86 59.3
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 1.8e-25 119.8 90 60.0
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 2.3e-25 119.4 90 58.9
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 2.3e-25 119.4 90 60.0
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 3.0e-25 119.0 90 60.0
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 3.0e-25 119.0 90 62.2
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 4.0e-25 118.6 90 57.8
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 5.2e-25 118.2 90 57.8
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 5.2e-25 118.2 91 61.5
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 5.2e-25 118.2 90 58.9
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 5.2e-25 118.2 89 59.6
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 6.8e-25 117.9 90 61.1
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 8.8e-25 117.5 90 57.8
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 8.8e-25 117.5 90 60.0
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 8.8e-25 117.5 90 61.1
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 8.8e-25 117.5 86 60.5
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 8.8e-25 117.5 90 60.0
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 1.2e-24 117.1 91 58.2
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 1.2e-24 117.1 90 57.8
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 1.2e-24 117.1 90 60.0
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 1.2e-24 117.1 90 57.8
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 1.2e-24 117.1 90 58.9
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 1.2e-24 117.1 80 66.2
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 1.2e-24 117.1 85 63.5
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 1.2e-24 117.1 86 58.1
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 1.5e-24 116.7 90 58.9
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 1.5e-24 116.7 90 58.9
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 1.5e-24 116.7 90 60.0
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 1.5e-24 116.7 90 60.0
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 1.5e-24 116.7 86 58.1
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 1.5e-24 116.7 87 60.9
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 2.0e-24 116.3 90 58.9
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 2.0e-24 116.3 86 58.1
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 2.6e-24 115.9 90 56.7
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 2.6e-24 115.9 90 58.9
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 2.6e-24 115.9 86 58.1
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 3.4e-24 115.5 90 60.0
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 3.4e-24 115.5 85 60.0
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 4.4e-24 115.2 90 56.7
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 4.4e-24 115.2 90 56.7
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 4.4e-24 115.2 86 58.1
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 5.7e-24 114.8 90 61.1
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 5.7e-24 114.8 86 58.1
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 5.7e-24 114.8 90 56.7
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 7.5e-24 114.4 96 55.2
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 7.5e-24 114.4 85 62.4
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 9.8e-24 114.0 90 56.7
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 1.3e-23 113.6 86 57.0
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 2.8e-23 112.5 86 58.1
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 3.7e-23 112.1 92 55.4
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 3.7e-23 112.1 85 60.0
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 4.8e-23 111.7 90 57.8
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 4.8e-23 111.7 90 58.9
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 4.8e-23 111.7 135 48.1
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 4.8e-23 111.7 90 57.8
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 8.3e-23 110.9 86 61.6
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.1e-22 110.5 88 52.3
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 4.1e-22 108.6 87 59.8
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 7.0e-22 107.8 90 54.4
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 4.5e-21 105.1 76 61.8
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 7.7e-21 104.4 67 64.2
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 1.7e-20 103.2 88 55.7
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 1.7e-20 103.2 75 61.3
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 3.6e-18 95.5 123 41.5
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 4.7e-18 95.1 123 40.7
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.4e-17 93.6 146 36.3
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.4e-17 93.6 146 36.3
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 3.0e-17 92.4 143 35.7
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 4.0e-17 92.0 93 47.3
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 7.0e-14 81.3 65 53.8
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 7.0e-14 81.3 59 55.9
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.7e-13 79.3 59 54.2
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.7e-13 79.3 59 54.2
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 5.0e-12 75.1 103 37.9
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 9.5e-11 70.9 54 53.7
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 1.2e-10 70.5 78 41.0
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 1.2e-10 70.5 39 79.5
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 3.4e-08 62.4 70 44.3


User provided reference genes

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