Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_31477 Sequoiadendron giganteum HOM05D003490 ORTHO05D384654 5.9e-39 163.7 81 100.0
SEGI_20998 Sequoiadendron giganteum HOM05D003490 ORTHO05D004835 3.7e-09 64.7 46 67.4
Ciclev10030969m.g Citrus clementina HOM05D003490 ORTHO05D004835 7.1e-08 60.5 43 67.4
Eucgr.F04030 Eucalyptus grandis HOM05D003490 ORTHO05D004835 9.2e-08 60.1 48 62.5
Atru.chr1.2661 Acer truncatum HOM05D003490 ORTHO05D004835 1.2e-07 59.7 43 67.4
GSVIVG01029546001 Vitis vinifera HOM05D003490 ORTHO05D004835 1.6e-07 59.3 48 60.4
CAN.G308.15 Capsicum annuum HOM05D003490 ORTHO05D004835 2.1e-07 58.9 48 58.3
Oeu049636.1 Olea europaea HOM05D003490 ORTHO05D004835 2.1e-07 58.9 48 60.4
PGR102G0759 Punica granatum HOM05D003490 ORTHO05D004835 2.1e-07 58.9 48 60.4
HPP92_010142 Vanilla planifolia HOM05D003490 ORTHO05D004835 2.1e-07 58.9 43 65.1
Aa31LG4G2100 Aethionema arabicum HOM05D003490 ORTHO05D004835 2.7e-07 58.5 41 68.3
Lj9A542G29 Lonicera japonica HOM05D003490 ORTHO05D004835 2.7e-07 58.5 48 60.4
Phvul.010G163900 Phaseolus vulgaris HOM05D003490 ORTHO05D004835 2.7e-07 58.5 48 60.4
TAR626G0762 Trochodendron aralioides HOM05D003490 ORTHO05D004835 2.7e-07 58.5 43 65.1
CAN.G390.39 Capsicum annuum HOM05D003490 ORTHO05D004835 3.5e-07 58.2 48 58.3
Oeu048560.2 Olea europaea HOM05D003490 ORTHO05D004835 3.5e-07 58.2 43 65.1
QL05p084430 Quercus lobata HOM05D003490 ORTHO05D004835 3.5e-07 58.2 48 58.3
QL05p084776 Quercus lobata HOM05D003490 ORTHO05D004835 3.5e-07 58.2 48 58.3
Rhsim08G0250100 Rhododendron simsii HOM05D003490 ORTHO05D004835 3.5e-07 58.2 48 58.3
vmacro18745 Vaccinium macrocarpon HOM05D003490 ORTHO05D004835 3.5e-07 58.2 43 65.1
BcaB03g16050 Brassica carinata HOM05D003490 ORTHO05D004835 4.6e-07 57.8 43 65.1
BcaC03g15855 Brassica carinata HOM05D003490 ORTHO05D004835 4.6e-07 57.8 43 65.1
BcaC08g47444 Brassica carinata HOM05D003490 ORTHO05D004835 4.6e-07 57.8 43 65.1
A02p22410 Brassica napus HOM05D003490 ORTHO05D004835 4.6e-07 57.8 43 65.1
A07p44070 Brassica napus HOM05D003490 ORTHO05D004835 4.6e-07 57.8 43 65.1
C02p36070 Brassica napus HOM05D003490 ORTHO05D004835 4.6e-07 57.8 43 65.1
C06p52800 Brassica napus HOM05D003490 ORTHO05D004835 4.6e-07 57.8 43 65.1
BolC2t09622H Brassica oleracea HOM05D003490 ORTHO05D004835 4.6e-07 57.8 43 65.1
BolC6t40297H Brassica oleracea HOM05D003490 ORTHO05D004835 4.6e-07 57.8 43 65.1
BraA02t07245Z Brassica rapa HOM05D003490 ORTHO05D004835 4.6e-07 57.8 43 65.1
BraA07t31915Z Brassica rapa HOM05D003490 ORTHO05D004835 4.6e-07 57.8 43 65.1
CARHR072490 Cardamine hirsuta HOM05D003490 ORTHO05D004835 4.6e-07 57.8 43 65.1
Dinv20337 Davidia involucrata HOM05D003490 ORTHO05D004835 4.6e-07 57.8 43 65.1
Dinv37778 Davidia involucrata HOM05D003490 ORTHO05D004835 4.6e-07 57.8 43 65.1
Eucgr.J03179 Eucalyptus grandis HOM05D003490 ORTHO05D004835 4.6e-07 57.8 43 65.1
Solyc06g063330.3 Solanum lycopersicum HOM05D003490 ORTHO05D004835 4.6e-07 57.8 51 56.9
Sopen06g022800 Solanum pennellii HOM05D003490 ORTHO05D004835 4.6e-07 57.8 48 58.3
PGSC0003DMG400026502 Solanum tuberosum HOM05D003490 ORTHO05D004835 4.6e-07 57.8 48 58.3
TPR.G38757 Trifolium pratense HOM05D003490 ORTHO05D004835 4.6e-07 57.8 48 58.3
TWI75G0499 Tripterygium wilfordii HOM05D003490 ORTHO05D004835 4.6e-07 57.8 43 65.1
Aqoxy4G02358 Aquilegia oxysepala HOM05D003490 ORTHO05D004835 6.0e-07 57.4 48 58.3
Aqoxy7G02759 Aquilegia oxysepala HOM05D003490 ORTHO05D004835 6.0e-07 57.4 48 58.3
BcaB05g25163 Brassica carinata HOM05D003490 ORTHO05D004835 6.0e-07 57.4 43 65.1
BcaC08g45403 Brassica carinata HOM05D003490 ORTHO05D004835 6.0e-07 57.4 43 65.1
A07p27430 Brassica napus HOM05D003490 ORTHO05D004835 6.0e-07 57.4 43 65.1
C06p30350 Brassica napus HOM05D003490 ORTHO05D004835 6.0e-07 57.4 43 65.1
BolC6t38198H Brassica oleracea HOM05D003490 ORTHO05D004835 6.0e-07 57.4 43 65.1
Cpa.g.sc155.13 Carica papaya HOM05D003490 ORTHO05D004835 6.0e-07 57.4 38 73.7
Ca_20969_v3 Cicer arietinum L. HOM05D003490 ORTHO05D004835 6.0e-07 57.4 48 58.3
Cc04_g00160 Coffea canephora HOM05D003490 ORTHO05D004835 6.0e-07 57.4 48 56.2
SalBow6G0193 Salvia bowleyana HOM05D003490 ORTHO05D004835 6.0e-07 57.4 48 56.2
BraA07t30384Z Brassica rapa HOM05D003490 ORTHO05D004835 7.8e-07 57.0 43 65.1
PSO144G0044 Papaver somniferum HOM05D003490 ORTHO05D004835 7.8e-07 57.0 48 56.2
PSO170G3382 Papaver somniferum HOM05D003490 ORTHO05D004835 7.8e-07 57.0 48 56.2
Sc15g0001120 Simmondsia chinensis HOM05D003490 ORTHO05D004835 7.8e-07 57.0 43 65.1
unitig_748.g7473 Utricularia gibba HOM05D003490 ORTHO05D004835 7.8e-07 57.0 46 58.7
Actinidia38808 Actinidia chinensis HOM05D003490 ORTHO05D004835 1.0e-06 56.6 43 62.8
CSS0028180 Camellia sinensis var. sinensis HOM05D003490 ORTHO05D004835 1.0e-06 56.6 43 62.8
Glyma.07G002300 Glycine max HOM05D003490 ORTHO05D004835 1.0e-06 56.6 48 58.3
Glyma.08G224400 Glycine max HOM05D003490 ORTHO05D004835 1.0e-06 56.6 48 58.3
Oeu038373.4 Olea europaea HOM05D003490 ORTHO05D004835 1.0e-06 56.6 48 56.2
VMungo0331G0590 Vigna mungo HOM05D003490 ORTHO05D004835 1.0e-06 56.6 43 62.8
AL2G39320 Arabidopsis lyrata HOM05D003490 ORTHO05D004835 1.3e-06 56.2 43 62.8
COL.COLO4_31156 Corchorus olitorius HOM05D003490 ORTHO05D004835 1.3e-06 56.2 43 62.8
Thhalv10018288m.g Eutrema salsugineum HOM05D003490 ORTHO05D004835 1.3e-06 56.2 43 62.8
Lsat_1_v5_gn_4_89100 Lactuca sativa HOM05D003490 ORTHO05D004835 1.3e-06 56.2 48 56.2
Lalb_Chr01g0011701 Lupinus albus HOM05D003490 ORTHO05D004835 1.3e-06 56.2 48 56.2
Manes.06G177500 Manihot esculenta HOM05D003490 ORTHO05D004835 1.3e-06 56.2 38 71.1
Manes.14G008200 Manihot esculenta HOM05D003490 ORTHO05D004835 1.3e-06 56.2 38 71.1
Nn8g40889 Nelumbo nucifera HOM05D003490 ORTHO05D004835 1.3e-06 56.2 43 62.8
Solyc12g055800.3 Solanum lycopersicum HOM05D003490 ORTHO05D004835 1.3e-06 56.2 48 54.2
Sopen12g024260 Solanum pennellii HOM05D003490 ORTHO05D004835 1.3e-06 56.2 48 54.2
PGSC0003DMG400028839 Solanum tuberosum HOM05D003490 ORTHO05D004835 1.3e-06 56.2 48 54.2
TAR383G0695 Trochodendron aralioides HOM05D003490 ORTHO05D004835 1.3e-06 56.2 43 62.8
CsaV3_7G033710 Cucumis sativus L. HOM05D003490 ORTHO05D004835 1.7e-06 55.8 43 60.5
Duzib160G0715 Durio zibethinus HOM05D003490 ORTHO05D004835 1.7e-06 55.8 38 71.1
Duzib192G0250 Durio zibethinus HOM05D003490 ORTHO05D004835 1.7e-06 55.8 38 71.1
Gohir.A05G114800 Gossypium hirsutum HOM05D003490 ORTHO05D004835 1.7e-06 55.8 38 71.1
Gohir.A10G002200 Gossypium hirsutum HOM05D003490 ORTHO05D004835 1.7e-06 55.8 38 71.1
Gohir.D05G115200 Gossypium hirsutum HOM05D003490 ORTHO05D004835 1.7e-06 55.8 38 71.1
Gohir.D10G002200 Gossypium hirsutum HOM05D003490 ORTHO05D004835 1.7e-06 55.8 38 71.1
Gorai.009G119300 Gossypium raimondii HOM05D003490 ORTHO05D004835 1.7e-06 55.8 38 71.1
Gorai.011G002600 Gossypium raimondii HOM05D003490 ORTHO05D004835 1.7e-06 55.8 38 71.1
THA.LOC104812329 Tarenaya hassleriana HOM05D003490 ORTHO05D004835 1.7e-06 55.8 38 71.1
GSVIVG01035538001 Vitis vinifera HOM05D003490 ORTHO05D004835 1.7e-06 55.8 43 62.8
ATR0626G015 Amborella trichopoda HOM05D003490 ORTHO05D004835 2.3e-06 55.5 43 60.5
MSTRG.9558 Avicennia marina HOM05D003490 ORTHO05D004835 2.3e-06 55.5 43 60.5
EL10Ac2g03529 Beta vulgaris HOM05D003490 ORTHO05D004835 2.3e-06 55.5 46 58.7
BcaB02g07185 Brassica carinata HOM05D003490 ORTHO05D004835 2.3e-06 55.5 43 62.8
CiPaw.01G091000 Carya illinoinensis HOM05D003490 ORTHO05D004835 2.3e-06 55.5 43 62.8
AUR62041619 Chenopodium quinoa HOM05D003490 ORTHO05D004835 2.3e-06 55.5 46 58.7
Migut.I01199 Erythranthe guttata HOM05D003490 ORTHO05D004835 2.3e-06 55.5 43 60.5
Lsat_1_v5_gn_5_137221 Lactuca sativa HOM05D003490 ORTHO05D004835 2.3e-06 55.5 48 54.2
THA.LOC104813629 Tarenaya hassleriana HOM05D003490 ORTHO05D004835 2.3e-06 55.5 38 71.1
TWI18G1026 Tripterygium wilfordii HOM05D003490 ORTHO05D004835 2.3e-06 55.5 43 62.8
Actinidia21886 Actinidia chinensis HOM05D003490 ORTHO05D004835 3.0e-06 55.1 43 62.8
AUR62036002 Chenopodium quinoa HOM05D003490 ORTHO05D004835 3.0e-06 55.1 46 56.5
Migut.D00889 Erythranthe guttata HOM05D003490 ORTHO05D004835 3.0e-06 55.1 43 60.5
MBI16_g34879_MAGBIO Magnolia biondii HOM05D003490 ORTHO05D004835 3.0e-06 55.1 48 54.2
Medtr4g005410 Medicago truncatula HOM05D003490 ORTHO05D004835 3.0e-06 55.1 48 56.2
Psat7g265520 Pisum sativum HOM05D003490 ORTHO05D004835 3.0e-06 55.1 48 56.2
SGA_v2.0_scaffold122G33265 Striga asiatica HOM05D003490 ORTHO05D004835 3.0e-06 55.1 43 60.5
MSTRG.10875 Avicennia marina HOM05D003490 ORTHO05D004835 3.9e-06 54.7 43 60.5
MSTRG.4524 Avicennia marina HOM05D003490 ORTHO05D004835 3.9e-06 54.7 38 68.4
Carub.0002s2573 Capsella rubella HOM05D003490 ORTHO05D004835 3.9e-06 54.7 43 60.5
FvH4_6g37000 Fragaria vesca HOM05D003490 ORTHO05D004835 3.9e-06 54.7 38 68.4
FAN02G2379 Fragaria x ananassa HOM05D003490 ORTHO05D004835 3.9e-06 54.7 38 68.4
FAN09G3564 Fragaria x ananassa HOM05D003490 ORTHO05D004835 3.9e-06 54.7 38 68.4
FAN14G5743 Fragaria x ananassa HOM05D003490 ORTHO05D004835 3.9e-06 54.7 38 68.4
MD09G1165200 Malus domestica HOM05D003490 ORTHO05D004835 3.9e-06 54.7 38 68.4
MD17G1162700 Malus domestica HOM05D003490 ORTHO05D004835 3.9e-06 54.7 38 68.4
Nitab4.5_0000357g0270 Nicotiana tabacum HOM05D003490 ORTHO05D004835 3.9e-06 54.7 48 54.2
Nitab4.5_0002354g0050 Nicotiana tabacum HOM05D003490 ORTHO05D004835 3.9e-06 54.7 48 54.2
Nitab4.5_0003757g0110 Nicotiana tabacum HOM05D003490 ORTHO05D004835 3.9e-06 54.7 48 54.2
Sp5g33920 Schrenkiella parvula HOM05D003490 ORTHO05D004835 3.9e-06 54.7 43 60.5
Hund22442 Selenicereus undatus HOM05D003490 ORTHO05D004835 3.9e-06 54.7 48 54.2
THA.LOC104808104 Tarenaya hassleriana HOM05D003490 ORTHO05D004835 3.9e-06 54.7 38 68.4
arahy.Tifrunner.gnm1.ann1.A6WMM1 Arachis hypogaea HOM05D003490 ORTHO05D004835 5.1e-06 54.3 48 54.2
arahy.Tifrunner.gnm1.ann1.EJI1J0 Arachis hypogaea HOM05D003490 ORTHO05D004835 5.1e-06 54.3 48 54.2
MELO3C024284.2 Cucumis melo HOM05D003490 ORTHO05D004835 5.1e-06 54.3 38 65.8
Duzib235G1262 Durio zibethinus HOM05D003490 ORTHO05D004835 5.1e-06 54.3 38 68.4
ECA234G0432 Erigeron canadensis HOM05D003490 ORTHO05D004835 5.1e-06 54.3 48 52.1
ECA234G3399 Erigeron canadensis HOM05D003490 ORTHO05D004835 5.1e-06 54.3 48 52.1
HanXRQChr10g0311201 Helianthus annuus HOM05D003490 ORTHO05D004835 5.1e-06 54.3 48 52.1
HanXRQChr12g0359711 Helianthus annuus HOM05D003490 ORTHO05D004835 5.1e-06 54.3 48 52.1
Hma1.2p1_0517F.1_g170820 Hydrangea macrophylla HOM05D003490 ORTHO05D004835 5.1e-06 54.3 43 60.5
Hma1.2p1_1111F.1_g258430 Hydrangea macrophylla HOM05D003490 ORTHO05D004835 5.1e-06 54.3 48 54.2
Hma1.2p1_3612F.1_g337050 Hydrangea macrophylla HOM05D003490 ORTHO05D004835 5.1e-06 54.3 43 60.5
Lj3g0014966 Lotus japonicus HOM05D003490 ORTHO05D004835 5.1e-06 54.3 48 54.2
Os06g0662000 Oryza sativa ssp. japonica HOM05D003490 ORTHO05D004835 6.6e-06 53.9 48 52.1
SGA_v2.0_scaffold71G23987 Striga asiatica HOM05D003490 ORTHO05D004835 6.6e-06 53.9 43 58.1
Thecc.06G057300 Theobroma cacao HOM05D003490 ORTHO05D004835 6.6e-06 53.9 38 68.4
Zm00001eb206930 Zea mays HOM05D003490 ORTHO05D004835 6.6e-06 53.9 48 52.1
Zm00001eb233450 Zea mays HOM05D003490 ORTHO05D004835 6.6e-06 53.9 43 58.1
Ah.16g108080 Amaranthus hybridus HOM05D003490 ORTHO05D004835 8.6e-06 53.5 46 54.3
Cfa002154 Carpinus fangiana HOM05D003490 ORTHO05D004835 8.6e-06 53.5 43 60.5
DCAR_007671 Daucus carota HOM05D003490 ORTHO05D004835 8.6e-06 53.5 48 52.1
FAN05G5356 Fragaria x ananassa HOM05D003490 ORTHO05D004835 8.6e-06 53.5 38 68.4
Os02g0175400 Oryza sativa ssp. japonica HOM05D003490 ORTHO05D004835 8.6e-06 53.5 48 50.0
Peaxi162Scf00177g00618 Petunia axillaris HOM05D003490 ORTHO05D004835 8.6e-06 53.5 43 58.1
RcHm_v2.0_Chr2g0149541 Rosa chinensis HOM05D003490 ORTHO05D004835 8.6e-06 53.5 38 68.4


User provided reference genes

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