Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 0.0e+00 1509.6 735 100.0
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 0.0e+00 1146.3 733 73.9
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 0.0e+00 1112.8 733 71.9
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 0.0e+00 1110.9 742 72.4
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1107.4 733 71.6
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1106.7 733 71.9
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1104.4 737 71.2
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 0.0e+00 1103.2 733 72.0
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 0.0e+00 1102.8 733 71.5
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1101.7 733 71.4
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1101.7 733 71.4
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 0.0e+00 1101.7 733 72.0
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 0.0e+00 1101.3 733 72.7
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1100.9 733 71.4
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1099.7 734 72.1
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1099.3 733 72.0
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1099.0 737 71.6
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1099.0 733 71.5
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 0.0e+00 1099.0 693 74.0
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1098.6 733 72.6
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 0.0e+00 1098.6 734 71.8
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1098.2 733 72.0
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 0.0e+00 1097.8 734 71.7
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 0.0e+00 1097.0 733 71.6
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 0.0e+00 1097.0 736 71.2
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 0.0e+00 1097.0 736 71.2
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 0.0e+00 1095.9 735 71.0
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 0.0e+00 1094.7 738 71.8
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 0.0e+00 1094.3 733 71.5
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 0.0e+00 1093.6 733 70.4
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1092.8 733 71.5
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 0.0e+00 1091.6 734 71.8
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 0.0e+00 1091.6 734 71.3
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 0.0e+00 1091.3 736 71.5
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 0.0e+00 1090.5 733 71.9
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1090.5 737 70.8
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 0.0e+00 1090.5 733 71.5
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1090.5 734 71.1
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1090.1 734 71.3
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1090.1 734 71.1
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 0.0e+00 1089.7 733 71.1
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1088.9 733 72.2
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1088.9 734 71.0
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1088.6 737 70.3
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 0.0e+00 1087.0 733 71.2
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1087.0 734 70.7
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 0.0e+00 1087.0 734 71.7
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1086.6 734 71.0
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1086.6 735 71.7
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 0.0e+00 1086.2 733 71.8
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 0.0e+00 1085.9 735 70.7
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 0.0e+00 1085.9 733 70.4
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1085.9 736 71.7
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 0.0e+00 1085.5 733 72.0
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 0.0e+00 1085.5 733 71.4
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 0.0e+00 1085.5 733 71.4
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1084.3 730 71.2
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 0.0e+00 1084.3 734 71.4
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 0.0e+00 1083.9 746 70.2
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1081.6 734 70.8
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1081.2 733 70.5
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1081.2 733 71.2
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 0.0e+00 1081.2 733 70.9
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1080.9 733 70.8
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 0.0e+00 1080.9 734 70.8
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 0.0e+00 1080.9 733 69.4
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 0.0e+00 1080.1 734 70.6
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1079.7 733 70.1
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1079.3 733 70.4
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1078.5 733 71.2
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1078.5 778 68.0
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1078.2 734 71.3
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 0.0e+00 1077.8 740 69.2
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1077.8 728 71.8
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1077.8 776 68.2
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1076.6 733 70.9
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1076.6 734 70.4
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 0.0e+00 1076.6 734 71.1
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 0.0e+00 1076.2 734 71.0
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 0.0e+00 1076.2 733 70.9
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 0.0e+00 1075.8 733 70.3
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 5.0e-312 1073.9 733 70.7
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 5.0e-312 1073.9 734 71.0
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 5.0e-312 1073.9 734 70.3
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 5.0e-312 1073.5 737 70.3
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 1.0e-311 1072.8 733 70.8
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 1.5e-311 1072.4 733 70.5
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 1.5e-311 1072.4 733 70.7
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 1.5e-311 1072.4 748 69.8
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 2.0e-311 1072.0 733 70.7
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 2.5e-311 1071.6 733 70.3
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 4.5e-311 1070.8 751 69.2
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 1.3e-310 1069.3 693 73.4
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 2.2e-310 1068.5 733 70.1
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 6.5e-310 1067.0 780 67.1
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 6.5e-310 1067.0 780 67.1
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 1.4e-309 1065.8 733 70.0
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 1.9e-309 1065.4 733 70.0
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 2.5e-309 1065.1 733 70.1
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 2.6e-306 1055.0 693 71.6
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 1.2e-303 1046.2 745 68.1
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 2.0e-303 1045.4 745 68.1
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 5.9e-303 1043.9 744 68.0
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 7.7e-303 1043.5 717 67.9
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 3.8e-302 1041.2 784 65.4
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 7.2e-301 1036.9 691 69.9
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 2.7e-300 1035.0 831 62.6
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 3.6e-300 1034.6 734 67.6
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 1.1e-298 1029.6 735 68.2
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 5.7e-298 1027.3 733 69.2
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 2.4e-296 1021.9 734 68.7
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 1.1e-293 1013.1 660 72.7
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 1.1e-293 1013.1 664 72.1
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 4.0e-291 1004.6 733 67.1
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 5.7e-290 1000.7 735 67.9
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 9.7e-290 1000.0 736 65.8
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 1.7e-289 999.2 655 71.1
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 9.4e-285 983.4 669 70.0
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 2.7e-284 981.9 736 66.2
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 3.6e-284 981.5 668 70.8
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 2.2e-281 972.2 693 67.1
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 4.0e-275 951.4 617 73.1
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 4.9e-273 944.5 617 72.6
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 1.4e-272 943.0 691 64.1
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 1.2e-266 923.3 691 64.1
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 1.2e-263 913.3 693 64.8
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 1.5e-261 906.4 586 73.9
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 8.0e-260 900.6 751 61.7
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 7.5e-258 894.0 733 61.4
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 2.2e-249 865.9 702 59.5
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 1.1e-248 863.6 788 55.6
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 7.8e-247 857.4 697 62.0
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 8.1e-244 847.4 573 72.1
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 3.4e-218 762.3 697 55.4
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 7.1e-216 754.6 507 73.8
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 3.8e-185 652.5 508 61.4
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 9.7e-173 611.3 419 68.7
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.3e-164 584.3 423 65.7
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 9.8e-141 505.0 301 81.7
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 5.1e-137 492.7 378 61.6
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 9.5e-136 488.4 354 67.2
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.9e-131 474.2 315 73.0
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 1.8e-126 457.6 306 73.9
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 8.7e-121 438.7 340 63.8
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 1.3e-116 424.9 350 64.3
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 4.9e-108 396.4 282 68.4
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.8e-86 324.7 302 57.0
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 3.8e-84 317.0 210 71.4
Gohir.A08G111640 Gossypium hirsutum HOM05D003895 ORTHO05D004723 4.2e-75 287.0 183 68.3
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 9.4e-75 285.8 389 45.5
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 1.4e-62 245.4 221 58.8
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 7.0e-62 243.0 203 58.6
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 3.8e-60 237.3 354 42.1
AagrBONN_evm.TU.Sc2ySwM_228.4951 Anthoceros agrestis HOM05D003895 ORTHO05D004723 1.1e-59 235.7 219 53.0
SalBow2G0791 Salvia bowleyana HOM05D003895 ORTHO05D004723 3.0e-57 227.6 194 55.2
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 1.2e-56 225.7 206 59.7
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 2.6e-40 171.4 207 50.2
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 7.3e-35 153.3 209 47.4
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 3.1e-33 147.9 118 59.3
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 2.6e-32 144.8 101 63.4
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 2.9e-23 114.8 141 45.4
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 3.7e-23 114.4 161 46.6
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 8.3e-23 113.2 61 82.0
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 4.1e-22 110.9 74 64.9
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 1.5e-19 102.4 60 80.0
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 2.8e-18 98.2 184 36.4
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 4.7e-18 97.4 184 37.0
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 4.4e-16 90.9 108 46.3
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 5.8e-16 90.5 126 45.2
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 8.3e-15 86.7 110 46.4
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 2.1e-13 82.0 114 41.2
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 2.7e-13 81.6 42 81.0
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 4.0e-09 67.8 50 70.0
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 5.8e-08 63.9 74 48.6
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 7.6e-08 63.5 73 49.3
PGSC0003DMG400033059 Solanum tuberosum HOM05D003895 ORTHO05D004723 2.9e-07 61.6 40 70.0


User provided reference genes

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