Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_31454 Sequoiadendron giganteum HOM05D003373 ORTHO05D004419 4.1e-216 755.0 548 100.0
SEGI_00885 Sequoiadendron giganteum HOM05D003373 ORTHO05D004419 1.6e-82 311.2 412 47.3
AagrBONN_evm.TU.Sc2ySwM_228.3903 Anthoceros agrestis HOM05D003373 ORTHO05D004419 8.5e-73 278.9 396 49.7
Pp3c16_590 Physcomitrium patens HOM05D003373 ORTHO05D004419 3.1e-67 260.4 424 40.6
Pp3c25_8180 Physcomitrium patens HOM05D003373 ORTHO05D004419 2.7e-66 257.3 353 43.9
Pp3c25_8182 Physcomitrium patens HOM05D003373 ORTHO05D004419 2.7e-66 257.3 353 43.9
Mapoly0083s0034 Marchantia polymorpha HOM05D003373 ORTHO05D004419 3.8e-65 253.4 389 41.9
ATR0665G354 Amborella trichopoda HOM05D003373 ORTHO05D004419 4.7e-63 246.5 348 45.1
Aqoxy3G03242 Aquilegia oxysepala HOM05D003373 ORTHO05D004419 4.7e-55 219.9 347 40.9
SMO012G0008 Selaginella moellendorffii HOM05D003373 ORTHO05D004419 4.7e-55 219.9 351 41.0
CDE09G0772 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 4.0e-54 216.9 304 43.8
PSO832G2541 Papaver somniferum HOM05D003373 ORTHO05D004419 2.0e-53 214.5 339 44.8
Cpa.g.sc5.285 Carica papaya HOM05D003373 ORTHO05D004419 7.5e-53 212.6 350 38.6
Potri.010G034900 Populus trichocarpa HOM05D003373 ORTHO05D004419 1.3e-52 211.8 378 38.1
PSO591G0008 Papaver somniferum HOM05D003373 ORTHO05D004419 2.2e-52 211.1 339 44.2
CDE08G0466 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 2.9e-52 210.7 381 37.5
MBI01_g01238_MAGBIO Magnolia biondii HOM05D003373 ORTHO05D004419 2.9e-52 210.7 525 34.1
Thecc.02G234000 Theobroma cacao HOM05D003373 ORTHO05D004419 3.7e-52 210.3 305 40.7
Nn4g23016 Nelumbo nucifera HOM05D003373 ORTHO05D004419 6.4e-52 209.5 337 39.8
Gorai.012G121700 Gossypium raimondii HOM05D003373 ORTHO05D004419 8.3e-52 209.1 305 43.0
Nn3g17111 Nelumbo nucifera HOM05D003373 ORTHO05D004419 8.3e-52 209.1 290 43.4
SMO141G0251 Selaginella moellendorffii HOM05D003373 ORTHO05D004419 1.1e-51 208.8 382 40.1
Gohir.D04G137300 Gossypium hirsutum HOM05D003373 ORTHO05D004419 1.4e-51 208.4 305 42.0
TAR629G0400 Trochodendron aralioides HOM05D003373 ORTHO05D004419 1.4e-51 208.4 337 42.1
AL1G38400 Arabidopsis lyrata HOM05D003373 ORTHO05D004419 3.2e-51 207.2 384 38.3
Manes.05G095400 Manihot esculenta HOM05D003373 ORTHO05D004419 3.2e-51 207.2 338 38.2
Gohir.A04G097600 Gossypium hirsutum HOM05D003373 ORTHO05D004419 5.4e-51 206.5 353 39.4
Eucgr.B02587 Eucalyptus grandis HOM05D003373 ORTHO05D004419 9.2e-51 205.7 382 43.7
TAR374G1081 Trochodendron aralioides HOM05D003373 ORTHO05D004419 9.2e-51 205.7 291 42.3
Duzib251G0793 Durio zibethinus HOM05D003373 ORTHO05D004419 1.2e-50 205.3 393 36.1
RcHm_v2.0_Chr4g0445281 Rosa chinensis HOM05D003373 ORTHO05D004419 1.2e-50 205.3 280 51.1
MELO3C012054.2 Cucumis melo HOM05D003373 ORTHO05D004419 2.7e-50 204.1 300 39.7
Potri.008G194200 Populus trichocarpa HOM05D003373 ORTHO05D004419 3.5e-50 203.8 322 40.1
Sabra10G0029900 Salix brachista HOM05D003373 ORTHO05D004419 3.5e-50 203.8 377 37.1
AT1G27090 Arabidopsis thaliana HOM05D003373 ORTHO05D004419 6.0e-50 203.0 334 38.9
ClCG05G024690 Citrullus lanatus HOM05D003373 ORTHO05D004419 6.0e-50 203.0 300 39.7
Carub.0001s2388 Capsella rubella HOM05D003373 ORTHO05D004419 1.3e-49 201.8 296 41.9
Thhalv10007745m.g Eutrema salsugineum HOM05D003373 ORTHO05D004419 2.3e-49 201.1 329 39.2
Duzib268G0991 Durio zibethinus HOM05D003373 ORTHO05D004419 3.0e-49 200.7 334 38.3
Sp1g21690 Schrenkiella parvula HOM05D003373 ORTHO05D004419 3.0e-49 200.7 320 41.6
Atru.chr11.1870 Acer truncatum HOM05D003373 ORTHO05D004419 3.9e-49 200.3 290 44.1
Cfa009067 Carpinus fangiana HOM05D003373 ORTHO05D004419 3.9e-49 200.3 343 38.5
Sabra08G0147700 Salix brachista HOM05D003373 ORTHO05D004419 5.0e-49 199.9 322 39.8
Duzib248G1211 Durio zibethinus HOM05D003373 ORTHO05D004419 6.6e-49 199.5 338 37.9
Manes.01G192000 Manihot esculenta HOM05D003373 ORTHO05D004419 6.6e-49 199.5 317 41.6
Gohir.A05G320900 Gossypium hirsutum HOM05D003373 ORTHO05D004419 8.6e-49 199.1 411 36.5
Gohir.D05G323100 Gossypium hirsutum HOM05D003373 ORTHO05D004419 8.6e-49 199.1 387 38.8
Gorai.009G346800 Gossypium raimondii HOM05D003373 ORTHO05D004419 8.6e-49 199.1 387 38.8
TPR.G31079 Trifolium pratense HOM05D003373 ORTHO05D004419 1.5e-48 198.4 383 36.6
COL.COLO4_36201 Corchorus olitorius HOM05D003373 ORTHO05D004419 1.9e-48 198.0 357 37.5
CsaV3_5G032210 Cucumis sativus L. HOM05D003373 ORTHO05D004419 1.9e-48 198.0 382 35.1
Hund25279 Selenicereus undatus HOM05D003373 ORTHO05D004419 1.9e-48 198.0 331 40.5
CiPaw.05G141000 Carya illinoinensis HOM05D003373 ORTHO05D004419 2.5e-48 197.6 383 38.9
Dinv24947 Davidia involucrata HOM05D003373 ORTHO05D004419 2.5e-48 197.6 407 35.1
Lalb_Chr10g0097901 Lupinus albus HOM05D003373 ORTHO05D004419 2.5e-48 197.6 290 41.7
CARHR024810 Cardamine hirsuta HOM05D003373 ORTHO05D004419 3.3e-48 197.2 343 42.0
CSS0018229 Camellia sinensis var. sinensis HOM05D003373 ORTHO05D004419 4.3e-48 196.8 294 41.5
Haze_12097 Corylus avellana HOM05D003373 ORTHO05D004419 4.3e-48 196.8 287 42.5
Medtr5g037960 Medicago truncatula HOM05D003373 ORTHO05D004419 4.3e-48 196.8 303 40.9
BolC5t31088H Brassica oleracea HOM05D003373 ORTHO05D004419 1.2e-47 195.3 352 40.6
Ca_04701_v3 Cicer arietinum L. HOM05D003373 ORTHO05D004419 1.2e-47 195.3 360 37.8
Glyma.01G041300 Glycine max HOM05D003373 ORTHO05D004419 1.2e-47 195.3 375 40.0
PSO478G2017 Papaver somniferum HOM05D003373 ORTHO05D004419 1.2e-47 195.3 284 41.2
Sed0023513 Sechium edule HOM05D003373 ORTHO05D004419 1.2e-47 195.3 307 40.1
Actinidia31168 Actinidia chinensis HOM05D003373 ORTHO05D004419 1.6e-47 194.9 343 36.2
THA.LOC104822090 Tarenaya hassleriana HOM05D003373 ORTHO05D004419 1.6e-47 194.9 322 39.4
CANSAT35G1086 Cannabis sativa HOM05D003373 ORTHO05D004419 2.1e-47 194.5 298 40.9
Dinv34191 Davidia involucrata HOM05D003373 ORTHO05D004419 2.1e-47 194.5 392 36.7
EL10Ac6g13134 Beta vulgaris HOM05D003373 ORTHO05D004419 2.8e-47 194.1 383 35.8
C05p23700 Brassica napus HOM05D003373 ORTHO05D004419 3.6e-47 193.7 334 40.7
VMungo1215G0200 Vigna mungo HOM05D003373 ORTHO05D004419 3.6e-47 193.7 383 37.1
arahy.Tifrunner.gnm1.ann1.YF4WKN Arachis hypogaea HOM05D003373 ORTHO05D004419 4.7e-47 193.4 284 48.6
Cc11_g13620 Coffea canephora HOM05D003373 ORTHO05D004419 4.7e-47 193.4 311 38.6
TWI36G0800 Tripterygium wilfordii HOM05D003373 ORTHO05D004419 6.2e-47 193.0 342 41.5
A09p40480 Brassica napus HOM05D003373 ORTHO05D004419 8.1e-47 192.6 334 38.3
PSO017G0861 Papaver somniferum HOM05D003373 ORTHO05D004419 8.1e-47 192.6 284 41.2
arahy.Tifrunner.gnm1.ann1.NIK4ZB Arachis hypogaea HOM05D003373 ORTHO05D004419 1.1e-46 192.2 284 48.6
Lj2g0024788 Lotus japonicus HOM05D003373 ORTHO05D004419 1.1e-46 192.2 281 40.6
Psat2g126240 Pisum sativum HOM05D003373 ORTHO05D004419 1.1e-46 192.2 524 31.9
BcaB07g32385 Brassica carinata HOM05D003373 ORTHO05D004419 1.4e-46 191.8 339 37.8
BraA09t39545Z Brassica rapa HOM05D003373 ORTHO05D006520 1.4e-46 191.8 334 38.0
Lalb_Chr04g0256431 Lupinus albus HOM05D003373 ORTHO05D004419 1.8e-46 191.4 288 39.9
MD13G1080700 Malus domestica HOM05D003373 ORTHO05D004419 1.8e-46 191.4 367 36.5
MD16G1080200 Malus domestica HOM05D003373 ORTHO05D004419 1.8e-46 191.4 381 36.2
Phvul.002G067800 Phaseolus vulgaris HOM05D003373 ORTHO05D004419 1.8e-46 191.4 393 35.6
PGR102G0330 Punica granatum HOM05D003373 ORTHO05D004419 1.8e-46 191.4 322 37.3
Ciclev10031519m.g Citrus clementina HOM05D003373 ORTHO05D004419 2.3e-46 191.0 386 33.4
TWI18G0023 Tripterygium wilfordii HOM05D003373 ORTHO05D004419 2.3e-46 191.0 287 40.4
Aa31LG4G10950 Aethionema arabicum HOM05D003373 ORTHO05D004419 5.2e-46 189.9 350 36.3
Glyma.02G022800 Glycine max HOM05D003373 ORTHO05D004419 5.2e-46 189.9 387 36.4
HPP92_019651 Vanilla planifolia HOM05D003373 ORTHO05D004419 5.2e-46 189.9 320 37.5
BcaB03g11980 Brassica carinata HOM05D003373 ORTHO05D004419 8.9e-46 189.1 277 46.6
QL03p066330 Quercus lobata HOM05D003373 ORTHO05D004419 8.9e-46 189.1 299 45.8
A08p27730 Brassica napus HOM05D003373 ORTHO05D004419 1.5e-45 188.3 319 37.6
BraA08t34708Z Brassica rapa HOM05D003373 ORTHO05D004419 1.5e-45 188.3 319 37.6
Actinidia04028 Actinidia chinensis HOM05D003373 ORTHO05D004419 2.6e-45 187.6 402 34.8
Migut.L01354 Erythranthe guttata HOM05D003373 ORTHO05D004419 4.4e-45 186.8 392 34.4
FAN07G0752 Fragaria x ananassa HOM05D003373 ORTHO05D004419 4.4e-45 186.8 378 41.5
MSTRG.13397 Avicennia marina HOM05D003373 ORTHO05D004419 5.8e-45 186.4 307 39.4
AUR62026278 Chenopodium quinoa HOM05D003373 ORTHO05D004419 5.8e-45 186.4 330 35.5
DCAR_007126 Daucus carota HOM05D003373 ORTHO05D004419 5.8e-45 186.4 281 40.2
SGA_v2.0_scaffold63G21675 Striga asiatica HOM05D003373 ORTHO05D004419 7.5e-45 186.0 354 36.4
Lj3A1043T79 Lonicera japonica HOM05D003373 ORTHO05D004419 9.8e-45 185.7 317 40.1
BcaC07g39253 Brassica carinata HOM05D003373 ORTHO05D004419 2.2e-44 184.5 320 37.2
CBR_g4061 Chara braunii HOM05D003373 ORTHO05D004419 2.2e-44 184.5 369 40.9
FAN17G1936 Fragaria x ananassa HOM05D003373 ORTHO05D004419 4.9e-44 183.3 377 42.7
HanXRQChr17g0570411 Helianthus annuus HOM05D003373 ORTHO05D004419 4.9e-44 183.3 394 38.3
FAN12G3521 Fragaria x ananassa HOM05D003373 ORTHO05D004419 8.3e-44 182.6 377 41.9
unitig_62.g23682 Utricularia gibba HOM05D003373 ORTHO05D004419 8.3e-44 182.6 410 34.4
FvH4_4g35680 Fragaria vesca HOM05D003373 ORTHO05D004419 1.1e-43 182.2 377 41.6
FAN22G0404 Fragaria x ananassa HOM05D003373 ORTHO05D004419 1.4e-43 181.8 377 41.9
BolC8t49893H Brassica oleracea HOM05D003373 ORTHO05D004419 1.9e-43 181.4 320 36.6
Sc11g0001580 Simmondsia chinensis HOM05D003373 ORTHO05D004419 4.1e-43 180.3 394 32.7
Ah.02g131980 Amaranthus hybridus HOM05D003373 ORTHO05D004419 9.2e-43 179.1 330 40.6
Lsat_1_v5_gn_4_9400 Lactuca sativa HOM05D003373 ORTHO05D004419 1.6e-42 178.3 375 34.1
PGR119G0099 Punica granatum HOM05D003373 ORTHO05D004419 2.1e-42 177.9 384 34.1
Lsat_1_v5_gn_8_163340 Lactuca sativa HOM05D003373 ORTHO05D004419 2.7e-42 177.6 341 36.7
SGA_v2.0_scaffold87G26974 Striga asiatica HOM05D003373 ORTHO05D004419 2.7e-42 177.6 405 33.8
Oeu057174.1 Olea europaea HOM05D003373 ORTHO05D004419 6.0e-42 176.4 366 33.6
Hma1.2p1_1045F.1_g251400 Hydrangea macrophylla HOM05D003373 ORTHO05D004419 7.8e-42 176.0 368 33.4
MSTRG.2363 Avicennia marina HOM05D003373 ORTHO05D004419 1.3e-41 175.3 377 33.4
SalBow2G1107 Salvia bowleyana HOM05D003373 ORTHO05D004419 1.7e-41 174.9 280 36.8
Zm00001eb217180 Zea mays HOM05D003373 ORTHO05D004419 1.7e-41 174.9 404 31.9
GSVIVG01020088001 Vitis vinifera HOM05D003373 ORTHO05D004419 3.0e-41 174.1 335 35.2
Migut.E00120 Erythranthe guttata HOM05D003373 ORTHO05D004419 5.1e-41 173.3 386 32.9
Rhsim12G0129000 Rhododendron simsii HOM05D003373 ORTHO05D004419 5.1e-41 173.3 522 31.0
HanXRQChr03g0092821 Helianthus annuus HOM05D003373 ORTHO05D004419 8.6e-41 172.6 384 33.3
Zm00001eb053410 Zea mays HOM05D003373 ORTHO05D004419 8.6e-41 172.6 385 33.0
Lj6A795T73 Lonicera japonica HOM05D003373 ORTHO05D004419 1.9e-40 171.4 376 33.2
SGA_v2.0_scaffold467G52045 Striga asiatica HOM05D003373 ORTHO05D004419 3.3e-40 170.6 286 37.8
DCAR_031055 Daucus carota HOM05D003373 ORTHO05D004419 2.1e-39 167.9 279 39.4
Sopen05g002860 Solanum pennellii HOM05D003373 ORTHO05D004419 3.6e-39 167.2 284 38.0
PGSC0003DMG400017635 Solanum tuberosum HOM05D003373 ORTHO05D004419 4.7e-39 166.8 276 38.8
PGSC0003DMG400007711 Solanum tuberosum HOM05D003373 ORTHO05D004419 6.2e-39 166.4 393 31.6
Peaxi162Scf00209g00714 Petunia axillaris HOM05D003373 ORTHO05D004419 8.1e-39 166.0 284 36.6
Sopen01g006060 Solanum pennellii HOM05D003373 ORTHO05D004419 1.4e-38 165.2 401 31.7
unitig_52.g17172 Utricularia gibba HOM05D003373 ORTHO05D004419 1.4e-38 165.2 382 33.8
CiPaw.06G080000 Carya illinoinensis HOM05D003373 ORTHO05D004419 2.3e-38 164.5 362 33.7
Oeu043029.1 Olea europaea HOM05D003373 ORTHO05D004419 4.0e-38 163.7 368 33.7
Solyc01g010440.4 Solanum lycopersicum HOM05D003373 ORTHO05D004419 4.4e-37 160.2 390 31.0
ECA234G3640 Erigeron canadensis HOM05D003373 ORTHO05D004419 1.3e-36 158.7 341 34.9
Os03g0688200 Oryza sativa ssp. japonica HOM05D003373 ORTHO05D004419 2.2e-36 157.9 354 34.2
AUR62026466 Chenopodium quinoa HOM05D003373 ORTHO05D004419 2.4e-35 154.5 330 33.9
vmacro16318 Vaccinium macrocarpon HOM05D003373 ORTHO05D004419 1.3e-33 148.7 383 31.3
SGA_v2.0_scaffold166G38286 Striga asiatica HOM05D003373 ORTHO05D004419 8.6e-33 146.0 303 32.0
Nitab4.5_0003297g0010 Nicotiana tabacum HOM05D003373 ORTHO05D004419 1.2e-31 142.1 392 32.1
Solyc05g006900.2 Solanum lycopersicum HOM05D003373 ORTHO05D004419 1.8e-30 138.3 248 37.1
Nitab4.5_0008971g0050 Nicotiana tabacum HOM05D003373 ORTHO05D004419 2.2e-28 131.3 344 31.1
Nitab4.5_0002382g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 3.8e-28 130.6 350 30.3
Nitab4.5_0000710g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 2.3e-25 121.3 401 29.9
Lsat_1_v5_gn_8_36201 Lactuca sativa HOM05D003373 ORTHO05D004419 2.5e-24 117.9 280 31.8
CSS0033815 Camellia sinensis var. sinensis HOM05D003373 ORTHO05D004419 3.3e-24 117.5 234 33.8
SalBow8G0803 Salvia bowleyana HOM05D003373 ORTHO05D004419 7.3e-24 116.3 223 33.6
Glyma.01G122300 Glycine max HOM05D003373 ORTHO05D004419 9.6e-24 115.9 124 48.4
Glyma.01G047300 Glycine max HOM05D003373 ORTHO05D004419 1.3e-23 115.5 123 48.0
Lalb_Chr17g0340231 Lupinus albus HOM05D003373 ORTHO05D004419 4.0e-22 110.5 112 46.4
BcaC05g26344 Brassica carinata HOM05D003373 ORTHO05D004419 5.3e-22 110.2 198 43.9
Nitab4.5_0003732g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 1.3e-20 105.5 247 30.0
Haze_04255 Corylus avellana HOM05D003373 ORTHO05D004419 1.7e-20 105.1 217 35.0
TAR622G0593 Trochodendron aralioides HOM05D003373 ORTHO05D004419 1.1e-19 102.4 79 69.6
C08p22560 Brassica napus HOM05D003373 ORTHO05D004419 1.4e-19 102.1 155 38.1
Cc00_g35170 Coffea canephora HOM05D003373 ORTHO05D004419 2.7e-18 97.8 176 37.5
SalBow3G2377 Salvia bowleyana HOM05D003373 ORTHO05D004419 6.7e-17 93.2 221 31.7
HPP92_019601 Vanilla planifolia HOM05D003373 ORTHO05D004419 1.3e-15 89.0 71 63.4
Haze_17060 Corylus avellana HOM05D003373 ORTHO05D004419 2.8e-15 87.8 79 60.8
Haze_17061 Corylus avellana HOM05D003373 ORTHO05D004419 2.4e-14 84.7 81 49.4
Lalb_Chr17g0340241 Lupinus albus HOM05D003373 ORTHO05D004419 2.6e-13 81.3 71 62.0
PGSC0003DMG400010979 Solanum tuberosum HOM05D003373 ORTHO05D013173 3.4e-13 80.9 72 58.3
VMungo0540G1512 Vigna mungo HOM05D003373 ORTHO05D013173 2.9e-12 77.8 73 57.5
C02p06900 Brassica napus HOM05D003373 ORTHO05D004419 2.4e-11 74.7 92 43.5
C02p07020 Brassica napus HOM05D003373 ORTHO05D004419 2.4e-11 74.7 92 43.5
VMungo0464G1165 Vigna mungo HOM05D003373 ORTHO05D004419 3.2e-11 74.3 73 56.2
AT3G24690 Arabidopsis thaliana HOM05D003373 ORTHO05D013173 7.9e-10 69.7 62 59.7
SalBow8G0677 Salvia bowleyana HOM05D003373 ORTHO05D004419 7.9e-10 69.7 89 40.4
AL3G40300 Arabidopsis lyrata HOM05D003373 ORTHO05D013173 1.0e-09 69.3 78 51.3
BcaC04g21286 Brassica carinata HOM05D003373 ORTHO05D013173 3.0e-09 67.8 67 58.2
C09p33540 Brassica napus HOM05D003373 ORTHO05D013173 3.0e-09 67.8 67 58.2
BolC9t56189H Brassica oleracea HOM05D003373 ORTHO05D013173 3.0e-09 67.8 67 58.2
Thhalv10029189m.g Eutrema salsugineum HOM05D003373 ORTHO05D013173 3.0e-09 67.8 71 56.3
BcaB01g01800 Brassica carinata HOM05D003373 ORTHO05D013173 5.1e-09 67.0 67 56.7
A09p26380 Brassica napus HOM05D003373 ORTHO05D013173 6.7e-09 66.6 67 56.7
BraA09t38212Z Brassica rapa HOM05D003373 ORTHO05D013173 6.7e-09 66.6 67 56.7
A03p29950 Brassica napus HOM05D003373 ORTHO05D013173 8.7e-09 66.2 69 56.5
C03p36240 Brassica napus HOM05D003373 ORTHO05D013173 8.7e-09 66.2 69 56.5
BolC3t15933H Brassica oleracea HOM05D003373 ORTHO05D013173 8.7e-09 66.2 69 56.5
BraA03t12184Z Brassica rapa HOM05D003373 ORTHO05D013173 8.7e-09 66.2 69 56.5
Manes.12G071300 Manihot esculenta HOM05D003373 ORTHO05D004419 8.1e-07 59.7 68 41.2


User provided reference genes

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