Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_31433 Sequoiadendron giganteum HOM05D002342 ORTHO05D002407 0.0e+00 1235.3 623 100.0
SEGI_24835 Sequoiadendron giganteum HOM05D002342 ORTHO05D002407 8.1e-261 903.7 453 99.3
SEGI_30167 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 2.7e-91 340.5 181 96.7
Duzib212G0344 Durio zibethinus HOM05D002342 ORTHO05D002407 1.2e-86 325.1 545 35.8
Thecc.04G199700 Theobroma cacao HOM05D002342 ORTHO05D002407 7.2e-84 315.8 544 35.8
Dinv27218 Davidia involucrata HOM05D002342 ORTHO05D002407 3.9e-82 310.1 548 34.9
Gohir.A03G095600 Gossypium hirsutum HOM05D002342 ORTHO05D002407 5.7e-81 306.2 544 34.6
Actinidia23411 Actinidia chinensis HOM05D002342 ORTHO05D002407 3.7e-80 303.5 558 34.4
Gorai.005G129600 Gossypium raimondii HOM05D002342 ORTHO05D002407 1.1e-79 302.0 542 34.3
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 1.4e-79 301.6 574 34.5
Gohir.D02G113900 Gossypium hirsutum HOM05D002342 ORTHO05D002407 3.1e-79 300.4 542 34.1
Nn1g07933 Nelumbo nucifera HOM05D002342 ORTHO05D002407 3.1e-79 300.4 628 33.1
TAR365G0690 Trochodendron aralioides HOM05D002342 ORTHO05D002407 2.0e-78 297.7 556 34.2
Rhsim09G0058500 Rhododendron simsii HOM05D002342 ORTHO05D002407 4.5e-78 296.6 573 33.5
TAR365G0670 Trochodendron aralioides HOM05D002342 ORTHO05D002407 1.4e-76 291.6 554 34.3
MD04G1012900 Malus domestica HOM05D002342 ORTHO05D002407 1.9e-76 291.2 553 32.5
RcHm_v2.0_Chr6g0275261 Rosa chinensis HOM05D002342 ORTHO05D002407 7.2e-76 289.3 565 31.9
TPR.G11869 Trifolium pratense HOM05D002342 ORTHO05D002407 6.1e-75 286.2 642 31.0
Lj4g0001754 Lotus japonicus HOM05D002342 ORTHO05D002407 1.8e-74 284.6 557 34.1
Aqoxy2G03980 Aquilegia oxysepala HOM05D002342 ORTHO05D002407 3.0e-74 283.9 572 33.4
Atru.chr4.1618 Acer truncatum HOM05D002342 ORTHO05D002407 6.7e-74 282.7 557 31.8
Oeu055768.2 Olea europaea HOM05D002342 ORTHO05D002407 1.1e-73 282.0 620 31.0
FAN24G1108 Fragaria x ananassa HOM05D002342 ORTHO05D002407 2.0e-73 281.2 560 31.4
FvH4_2g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 2.6e-73 280.8 560 31.4
CSS0000956 Camellia sinensis var. sinensis HOM05D002342 ORTHO05D002407 3.3e-73 280.4 543 33.7
MELO3C006307.2 Cucumis melo HOM05D002342 ORTHO05D002407 5.7e-73 279.6 554 32.7
FAN15G0433 Fragaria x ananassa HOM05D002342 ORTHO05D002407 5.7e-73 279.6 560 31.4
MBI04_g21151_MAGBIO Magnolia biondii HOM05D002342 ORTHO05D002407 5.7e-73 279.6 470 36.8
Prupe.1G159200 Prunus persica HOM05D002342 ORTHO05D002407 5.7e-73 279.6 553 31.1
ClCG05G003260 Citrullus lanatus HOM05D002342 ORTHO05D002407 2.2e-72 277.7 576 32.5
Manes.03G146000 Manihot esculenta HOM05D002342 ORTHO05D002407 2.8e-72 277.3 554 30.9
CsaV3_3G010890 Cucumis sativus L. HOM05D002342 ORTHO05D002407 3.7e-72 276.9 578 32.4
Dinv38212 Davidia involucrata HOM05D002342 ORTHO05D002407 3.7e-72 276.9 549 32.6
Ciclev10004121m.g Citrus clementina HOM05D002342 ORTHO05D002407 2.4e-71 274.2 551 31.4
Medtr8g085280 Medicago truncatula HOM05D002342 ORTHO05D002407 4.1e-71 273.5 646 31.4
Psat7g074440 Pisum sativum HOM05D002342 ORTHO05D002407 4.1e-71 273.5 568 33.1
Lj6C522G10 Lonicera japonica HOM05D002342 ORTHO05D002407 5.3e-71 273.1 550 33.5
Sabra16G0200600 Salix brachista HOM05D002342 ORTHO05D002407 9.1e-71 272.3 592 28.5
Sed0007147 Sechium edule HOM05D002342 ORTHO05D002407 9.1e-71 272.3 578 32.9
PSO063G4028 Papaver somniferum HOM05D002342 ORTHO05D002407 1.2e-70 271.9 570 31.6
Potri.001G317200 Populus trichocarpa HOM05D002342 ORTHO05D002407 2.0e-70 271.2 620 28.5
Sed0020750 Sechium edule HOM05D002342 ORTHO05D002407 2.6e-70 270.8 580 32.8
Glyma.08G111400 Glycine max HOM05D002342 ORTHO05D002407 5.9e-70 269.6 638 30.4
CANSAT78G2520 Cannabis sativa HOM05D002342 ORTHO05D002407 1.0e-69 268.9 565 32.2
arahy.Tifrunner.gnm1.ann1.ZGTC82 Arachis hypogaea HOM05D002342 ORTHO05D002407 1.7e-69 268.1 629 29.3
Ca_17971_v3 Cicer arietinum L. HOM05D002342 ORTHO05D002407 1.7e-69 268.1 561 32.8
Cfa014941 Carpinus fangiana HOM05D002342 ORTHO05D002407 2.9e-69 267.3 624 30.9
Haze_11629 Corylus avellana HOM05D002342 ORTHO05D002407 2.9e-69 267.3 560 30.9
Phvul.003G291200 Phaseolus vulgaris HOM05D002342 ORTHO05D002407 6.5e-69 266.2 627 30.1
TWI09G0668 Tripterygium wilfordii HOM05D002342 ORTHO05D002407 2.5e-68 264.2 650 29.8
PGR083G1386 Punica granatum HOM05D002342 ORTHO05D002407 3.2e-68 263.8 448 33.5
VMungo1383G2708 Vigna mungo HOM05D002342 ORTHO05D002407 3.2e-68 263.8 635 29.4
EL10Ac3g07477 Beta vulgaris HOM05D002342 ORTHO05D002407 5.5e-68 263.1 557 33.4
PSO017G5596 Papaver somniferum HOM05D002342 ORTHO05D002407 7.2e-68 262.7 574 31.5
PSO017G1666 Papaver somniferum HOM05D002342 ORTHO05D002407 9.4e-68 262.3 535 32.7
MD04G1013300 Malus domestica HOM05D002342 ORTHO05D002407 3.6e-67 260.4 481 31.6
QL05p014183 Quercus lobata HOM05D002342 ORTHO05D002407 6.1e-67 259.6 444 35.6
CiPaw.01G119100 Carya illinoinensis HOM05D002342 ORTHO05D002407 1.4e-66 258.5 451 35.0
Atru.chr4.1623 Acer truncatum HOM05D002342 ORTHO05D002407 1.8e-66 258.1 535 30.5
Lalb_Chr12g0205541 Lupinus albus HOM05D002342 ORTHO05D002407 1.8e-66 258.1 665 28.9
Sc13g0000230 Simmondsia chinensis HOM05D002342 ORTHO05D002407 4.0e-66 256.9 550 30.4
QL05p014435 Quercus lobata HOM05D002342 ORTHO05D002407 5.2e-66 256.5 554 30.1
DCAR_002789 Daucus carota HOM05D002342 ORTHO05D002407 1.2e-65 255.4 553 31.3
QL05p014243 Quercus lobata HOM05D002342 ORTHO05D002407 1.5e-65 255.0 473 32.6
ECA233G4700 Erigeron canadensis HOM05D002342 ORTHO05D002407 2.6e-65 254.2 553 30.9
THA.LOC104804807 Tarenaya hassleriana HOM05D002342 ORTHO05D002407 4.8e-64 250.0 543 31.1
Hund05344 Selenicereus undatus HOM05D002342 ORTHO05D002407 6.3e-64 249.6 545 31.7
Cc03_g08030 Coffea canephora HOM05D002342 ORTHO05D002407 1.8e-63 248.1 556 30.2
PSO063G7363 Papaver somniferum HOM05D002342 ORTHO05D002407 2.4e-63 247.7 566 30.7
HanXRQChr16g0498001 Helianthus annuus HOM05D002342 ORTHO05D002407 1.6e-62 245.0 557 30.5
Ah.14g086370 Amaranthus hybridus HOM05D002342 ORTHO05D002407 2.2e-61 241.1 581 29.4
AUR62020836 Chenopodium quinoa HOM05D002342 ORTHO05D002407 5.0e-61 240.0 550 28.5
vmacro00454 Vaccinium macrocarpon HOM05D002342 ORTHO05D002407 5.0e-61 240.0 398 35.2
Migut.N00402 Erythranthe guttata HOM05D002342 ORTHO05D002407 6.5e-61 239.6 546 31.1
Haze_11627 Corylus avellana HOM05D002342 ORTHO05D002407 1.5e-60 238.4 330 38.8
RcHm_v2.0_Chr4g0414351 Rosa chinensis HOM05D002342 ORTHO05D002407 3.2e-60 237.3 631 27.6
Peaxi162Scf00047g00342 Petunia axillaris HOM05D002342 ORTHO05D002407 4.2e-60 236.9 556 30.9
Lsat_1_v5_gn_6_60921 Lactuca sativa HOM05D002342 ORTHO05D002407 1.2e-59 235.3 528 29.9
Aa31LG9G3890 Aethionema arabicum HOM05D002342 ORTHO05D002407 2.7e-59 234.2 538 30.5
Solyc09g092100.4 Solanum lycopersicum HOM05D002342 ORTHO05D002407 2.7e-59 234.2 556 30.2
Sopen09g034970 Solanum pennellii HOM05D002342 ORTHO05D002407 4.7e-59 233.4 556 30.9
HanXRQChr02g0059031 Helianthus annuus HOM05D002342 ORTHO05D002407 8.0e-59 232.6 552 29.2
FvH4_4g13660 Fragaria vesca HOM05D002342 ORTHO05D002407 1.4e-58 231.9 657 27.2
VMungo1127G1955 Vigna mungo HOM05D002342 ORTHO05D002407 1.4e-58 231.9 409 32.0
Prupe.1G159000 Prunus persica HOM05D002342 ORTHO05D002407 1.8e-58 231.5 339 36.9
AT4G13750 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 3.0e-58 230.7 542 30.3
Migut.N01843 Erythranthe guttata HOM05D002342 ORTHO05D002407 4.0e-58 230.3 436 31.4
Thhalv10024181m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 4.0e-58 230.3 542 31.4
Lj6C516G5 Lonicera japonica HOM05D002342 ORTHO05D002407 5.2e-58 229.9 539 31.0
ATR0829G112 Amborella trichopoda HOM05D002342 ORTHO05D002407 8.8e-58 229.2 331 37.8
Carub.0007s2871 Capsella rubella HOM05D002342 ORTHO05D002407 8.8e-58 229.2 544 30.7
CAN.G1333.8 Capsicum annuum HOM05D002342 ORTHO05D002407 2.0e-57 228.0 555 29.9
AL7G42760 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 2.6e-57 227.6 545 30.6
BcaB04g17657 Brassica carinata HOM05D002342 ORTHO05D002407 1.7e-56 224.9 548 31.2
CARHR219530 Cardamine hirsuta HOM05D002342 ORTHO05D002407 6.3e-56 223.0 541 31.8
Cpa.g.sc1159.2 Carica papaya HOM05D002342 ORTHO05D002407 6.3e-56 223.0 366 35.2
CiPaw.01G119300 Carya illinoinensis HOM05D002342 ORTHO05D002407 6.3e-56 223.0 339 34.5
Migut.N01844 Erythranthe guttata HOM05D002342 ORTHO05D002407 6.3e-56 223.0 567 28.7
MD04G1012800 Malus domestica HOM05D002342 ORTHO05D002407 6.3e-56 223.0 353 35.1
BcaC07g37335 Brassica carinata HOM05D002342 ORTHO05D002407 8.3e-56 222.6 570 30.4
BolC8t47622H Brassica oleracea HOM05D002342 ORTHO05D002407 8.3e-56 222.6 570 30.4
Sp7g11520 Schrenkiella parvula HOM05D002342 ORTHO05D002407 4.1e-55 220.3 542 30.8
FAN12G2750 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.2e-54 218.8 326 36.8
Lj6C523G2 Lonicera japonica HOM05D002342 ORTHO05D002407 2.0e-54 218.0 321 38.0
FAN07G2373 Fragaria x ananassa HOM05D002342 ORTHO05D002407 3.5e-54 217.2 345 35.7
Oeu045313.1 Olea europaea HOM05D002342 ORTHO05D002407 1.3e-53 215.3 331 34.4
BraA08t32682Z Brassica rapa HOM05D002342 ORTHO05D002407 1.7e-53 214.9 577 30.7
FAN22G0412 Fragaria x ananassa HOM05D002342 ORTHO05D002407 2.9e-53 214.2 326 36.8
Nitab4.5_0006215g0010 Nicotiana tabacum HOM05D002342 ORTHO05D002407 3.8e-53 213.8 563 29.3
Lj6C525G7 Lonicera japonica HOM05D002342 ORTHO05D002407 5.0e-53 213.4 323 38.4
Nitab4.5_0000401g0100 Nicotiana tabacum HOM05D002342 ORTHO05D002407 6.5e-53 213.0 570 28.1
A08p06660 Brassica napus HOM05D002342 ORTHO05D002407 1.5e-52 211.8 575 30.1
Lj6A526G34 Lonicera japonica HOM05D002342 ORTHO05D002407 3.2e-52 210.7 517 30.4
Eucgr.H02751 Eucalyptus grandis HOM05D002342 ORTHO05D002407 4.2e-52 210.3 396 31.3
Eucgr.H02762 Eucalyptus grandis HOM05D002342 ORTHO05D002407 4.2e-52 210.3 337 33.2
Eucgr.H02767 Eucalyptus grandis HOM05D002342 ORTHO05D002407 9.5e-52 209.1 297 37.0
Eucgr.H02755 Eucalyptus grandis HOM05D002342 ORTHO05D002407 1.6e-51 208.4 297 36.7
ECA233G6204 Erigeron canadensis HOM05D002342 ORTHO05D002407 4.7e-51 206.8 441 31.1
Zm00001eb061370 Zea mays HOM05D002342 ORTHO05D002407 4.7e-51 206.8 553 27.5
AUR62018583 Chenopodium quinoa HOM05D002342 ORTHO05D002407 1.4e-50 205.3 544 26.8
Eucgr.A01635 Eucalyptus grandis HOM05D002342 ORTHO05D002407 1.4e-50 205.3 372 32.5
Mapoly0105s0052 Marchantia polymorpha HOM05D002342 ORTHO05D002407 1.8e-50 204.9 495 31.7
HPP92_003883 Vanilla planifolia HOM05D002342 ORTHO05D002407 2.3e-50 204.5 407 32.2
HanXRQChr11g0339061 Helianthus annuus HOM05D002342 ORTHO05D002407 3.0e-50 204.1 478 30.8
Eucgr.H02759 Eucalyptus grandis HOM05D002342 ORTHO05D002407 4.4e-49 200.3 289 36.0
SHI00029 Sapria himalayana HOM05D002342 ORTHO05D002407 5.7e-49 199.9 288 37.5
SGA_v2.0_scaffold31G12585 Striga asiatica HOM05D002342 ORTHO05D002407 2.2e-48 198.0 328 32.6
Eucgr.H02761 Eucalyptus grandis HOM05D002342 ORTHO05D002407 3.7e-48 197.2 300 36.0
Lsat_1_v5_gn_6_60880 Lactuca sativa HOM05D002342 ORTHO05D002407 5.4e-47 193.4 442 30.1
GSVIVG01020920001 Vitis vinifera HOM05D002342 ORTHO05D002407 2.0e-46 191.4 574 26.5
Lj6C525G9 Lonicera japonica HOM05D002342 ORTHO05D002407 3.8e-45 187.2 299 36.5
HanXRQChr16g0515561 Helianthus annuus HOM05D002342 ORTHO05D002407 8.3e-40 169.5 287 35.9
HPP92_020882 Vanilla planifolia HOM05D002342 ORTHO05D002407 2.4e-39 167.9 537 27.7
CBR_g6414 Chara braunii HOM05D002342 ORTHO05D002407 5.4e-39 166.8 571 27.8
Haze_11628 Corylus avellana HOM05D002342 ORTHO05D002407 5.4e-39 166.8 260 35.0
Eucgr.H02757 Eucalyptus grandis HOM05D002342 ORTHO05D002407 5.6e-36 156.8 249 34.1
PSO017G1443 Papaver somniferum HOM05D002342 ORTHO05D002407 3.4e-33 147.5 241 36.1
Hma1.2p1_0319F.1_g123840 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 9.8e-33 146.0 323 30.3
Pp3c21_20720 Physcomitrium patens HOM05D002342 ORTHO05D002407 6.0e-30 136.7 210 39.0
CAN.G1333.5 Capsicum annuum HOM05D002342 ORTHO05D002407 4.3e-28 130.6 227 34.8
Lj6P516T44 Lonicera japonica HOM05D002342 ORTHO05D002407 2.0e-25 121.7 107 48.6
Lj6P524T31 Lonicera japonica HOM05D002342 ORTHO05D002407 2.0e-25 121.7 107 48.6
AUR62018580 Chenopodium quinoa HOM05D002342 ORTHO05D013844 6.4e-24 116.7 265 28.3
AagrBONN_evm.TU.Sc2ySwM_228.1730 Anthoceros agrestis HOM05D002342 ORTHO05D002407 1.3e-21 109.0 549 23.9
Actinidia38750 Actinidia chinensis HOM05D002342 ORTHO05D002407 5.6e-20 103.6 83 51.8
SMO337G0030 Selaginella moellendorffii HOM05D002342 ORTHO05D002407 1.2e-17 95.9 101 42.6
QL05p014618 Quercus lobata HOM05D002342 ORTHO05D002407 1.5e-17 95.5 100 43.0
CAN.G1333.6 Capsicum annuum HOM05D002342 ORTHO05D002407 1.2e-14 85.9 361 24.4
unitig_8.g4999 Utricularia gibba HOM05D002342 ORTHO05D002407 4.3e-12 77.4 164 31.1
ATR0829G161 Amborella trichopoda HOM05D002342 ORTHO05D002407 2.4e-10 71.6 208 34.1


User provided reference genes

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