Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_31428 Sequoiadendron giganteum HOM05D003489 ORTHO05D384067 1.7e-174 615.9 312 100.0
SEGI_41285 Sequoiadendron giganteum HOM05D003489 ORTHO05D004109 4.2e-16 89.7 44 97.7
CSS0006688 Camellia sinensis var. sinensis HOM05D003489 ORTHO05D004109 1.4e-11 74.7 44 79.5
Thecc.02G007100 Theobroma cacao HOM05D003489 ORTHO05D004109 1.4e-11 74.7 44 81.8
COL.COLO4_17645 Corchorus olitorius HOM05D003489 ORTHO05D004109 3.1e-11 73.6 44 79.5
A03p37810 Brassica napus HOM05D003489 ORTHO05D004109 4.1e-11 73.2 44 77.3
BraA03t12936Z Brassica rapa HOM05D003489 ORTHO05D004109 4.1e-11 73.2 44 77.3
CSS0044390 Camellia sinensis var. sinensis HOM05D003489 ORTHO05D004109 4.1e-11 73.2 57 66.7
Duzib248G1596 Durio zibethinus HOM05D003489 ORTHO05D004109 4.1e-11 73.2 44 77.3
Duzib268G0350 Durio zibethinus HOM05D003489 ORTHO05D004109 4.1e-11 73.2 44 75.0
QL04p087224 Quercus lobata HOM05D003489 ORTHO05D004109 5.3e-11 72.8 44 77.3
TWI38G2359 Tripterygium wilfordii HOM05D003489 ORTHO05D004109 5.3e-11 72.8 44 75.0
vmacro23254 Vaccinium macrocarpon HOM05D003489 ORTHO05D004109 5.3e-11 72.8 44 75.0
CARHR087330 Cardamine hirsuta HOM05D003489 ORTHO05D004109 6.9e-11 72.4 44 75.0
AUR62032089 Chenopodium quinoa HOM05D003489 ORTHO05D004109 6.9e-11 72.4 55 65.5
Potri.006G025400 Populus trichocarpa HOM05D003489 ORTHO05D004109 6.9e-11 72.4 44 72.7
SalBow8G4095 Salvia bowleyana HOM05D003489 ORTHO05D004109 6.9e-11 72.4 44 75.0
Cpa.g.sc30.144 Carica papaya HOM05D003489 ORTHO05D004109 9.0e-11 72.0 86 46.5
Dinv09060 Davidia involucrata HOM05D003489 ORTHO05D004109 9.0e-11 72.0 74 55.4
Prupe.4G132600 Prunus persica HOM05D003489 ORTHO05D004109 9.0e-11 72.0 55 67.3
THA.LOC104826329 Tarenaya hassleriana HOM05D003489 ORTHO05D004109 9.0e-11 72.0 86 46.5
Carub.0003s1216 Capsella rubella HOM05D003489 ORTHO05D004109 1.2e-10 71.6 80 50.0
Gohir.A08G232000 Gossypium hirsutum HOM05D003489 ORTHO05D004109 1.2e-10 71.6 80 51.2
Gohir.D08G252400 Gossypium hirsutum HOM05D003489 ORTHO05D004109 1.2e-10 71.6 80 51.2
Sabra06G0018700 Salix brachista HOM05D003489 ORTHO05D004109 1.2e-10 71.6 55 61.8
Thecc.07G182300 Theobroma cacao HOM05D003489 ORTHO05D004109 1.2e-10 71.6 80 50.0
Atru.chr10.457 Acer truncatum HOM05D003489 ORTHO05D004109 1.5e-10 71.2 44 75.0
Gorai.008G049000 Gossypium raimondii HOM05D003489 ORTHO05D004109 1.5e-10 71.2 44 72.7
Psat4g137680 Pisum sativum HOM05D003489 ORTHO05D004109 1.5e-10 71.2 44 70.5
arahy.Tifrunner.gnm1.ann1.JYF968 Arachis hypogaea HOM05D003489 ORTHO05D004109 2.0e-10 70.9 44 68.2
arahy.Tifrunner.gnm1.ann1.T86MTP Arachis hypogaea HOM05D003489 ORTHO05D004109 2.0e-10 70.9 44 68.2
CANSAT80G0618 Cannabis sativa HOM05D003489 ORTHO05D004109 2.0e-10 70.9 86 45.3
Cfa000694 Carpinus fangiana HOM05D003489 ORTHO05D004109 2.0e-10 70.9 44 75.0
Gorai.004G269100 Gossypium raimondii HOM05D003489 ORTHO05D004109 2.0e-10 70.9 87 51.7
Lj2A345T27 Lonicera japonica HOM05D003489 ORTHO05D004109 2.0e-10 70.9 57 64.9
RcHm_v2.0_Chr5g0024271 Rosa chinensis HOM05D003489 ORTHO05D004109 2.0e-10 70.9 80 50.0
SGA_v2.0_scaffold47G17759 Striga asiatica HOM05D003489 ORTHO05D004109 2.0e-10 70.9 44 72.7
Dinv19586 Davidia involucrata HOM05D003489 ORTHO05D004109 2.6e-10 70.5 80 48.8
Gohir.A12G047600 Gossypium hirsutum HOM05D003489 ORTHO05D004109 2.6e-10 70.5 44 72.7
Nn7g38230 Nelumbo nucifera HOM05D003489 ORTHO05D004109 2.6e-10 70.5 87 47.1
Nitab4.5_0000029g0290 Nicotiana tabacum HOM05D003489 ORTHO05D004109 2.6e-10 70.5 44 72.7
Nitab4.5_0000029g0300 Nicotiana tabacum HOM05D003489 ORTHO05D004109 2.6e-10 70.5 44 72.7
Nitab4.5_0006109g0040 Nicotiana tabacum HOM05D003489 ORTHO05D004109 2.6e-10 70.5 44 72.7
Peaxi162Scf00452g00336 Petunia axillaris HOM05D003489 ORTHO05D004109 2.6e-10 70.5 55 63.6
RcHm_v2.0_Chr5g0020441 Rosa chinensis HOM05D003489 ORTHO05D004109 2.6e-10 70.5 44 75.0
BcaC01g04035 Brassica carinata HOM05D003489 ORTHO05D004109 3.4e-10 70.1 44 72.7
C03p45870 Brassica napus HOM05D001395 ORTHO05D004109 3.4e-10 70.1 44 72.7
BolC3t16863H Brassica oleracea HOM05D003489 ORTHO05D004109 3.4e-10 70.1 44 72.7
Ciclev10005524m.g Citrus clementina HOM05D003489 ORTHO05D004109 3.4e-10 70.1 86 43.0
Ciclev10016100m.g Citrus clementina HOM05D003489 ORTHO05D004109 3.4e-10 70.1 44 72.7
FvH4_3g12490 Fragaria vesca HOM05D003489 ORTHO05D004109 3.4e-10 70.1 44 72.7
FAN16G1927 Fragaria x ananassa HOM05D003489 ORTHO05D004109 3.4e-10 70.1 44 72.7
FAN25G0305 Fragaria x ananassa HOM05D003489 ORTHO05D004109 3.4e-10 70.1 44 72.7
PGR031G2340 Punica granatum HOM05D003489 ORTHO05D004109 3.4e-10 70.1 44 70.5
Sabra12G0094800 Salix brachista HOM05D003489 ORTHO05D004109 3.4e-10 70.1 87 48.3
BolC1t02432H Brassica oleracea HOM05D004774 ORTHO05D033846 4.5e-10 69.7 44 70.5
CSS0010976 Camellia sinensis var. sinensis HOM05D003489 ORTHO05D004109 4.5e-10 69.7 80 52.5
CANSAT80G0498 Cannabis sativa HOM05D003489 ORTHO05D004109 4.5e-10 69.7 57 63.2
Lj3g0015370 Lotus japonicus HOM05D003489 ORTHO05D004109 4.5e-10 69.7 44 68.2
Lalb_Chr19g0133211 Lupinus albus HOM05D003489 ORTHO05D004109 4.5e-10 69.7 44 68.2
Pp3c23_13630 Physcomitrium patens HOM05D003489 ORTHO05D004109 4.5e-10 69.7 42 76.2
GSVIVG01012113001 Vitis vinifera HOM05D003489 ORTHO05D004109 4.5e-10 69.7 55 63.6
AL3G24480 Arabidopsis lyrata HOM05D003489 ORTHO05D004109 5.9e-10 69.3 80 48.8
BcaB04g18721 Brassica carinata HOM05D003489 ORTHO05D004109 5.9e-10 69.3 57 61.4
Cpa.g.sc32.32 Carica papaya HOM05D003489 ORTHO05D033846 5.9e-10 69.3 44 70.5
Cfa019401 Carpinus fangiana HOM05D003489 ORTHO05D004109 5.9e-10 69.3 57 61.4
CiPaw.10G063600 Carya illinoinensis HOM05D003489 ORTHO05D004109 5.9e-10 69.3 44 77.3
Glyma.15G213100 Glycine max HOM05D003489 ORTHO05D004109 5.9e-10 69.3 44 68.2
Gorai.009G353800 Gossypium raimondii HOM05D003489 ORTHO05D004109 5.9e-10 69.3 79 53.2
MD05G1229700 Malus domestica HOM05D003489 ORTHO05D004109 5.9e-10 69.3 57 63.2
Medtr8g442750 Medicago truncatula HOM05D003489 ORTHO05D004109 5.9e-10 69.3 43 69.8
Oeu019723.1 Olea europaea HOM05D003489 ORTHO05D004109 5.9e-10 69.3 44 70.5
PSO017G1717 Papaver somniferum HOM05D003489 ORTHO05D004109 5.9e-10 69.3 44 70.5
PGR004G2417 Punica granatum HOM05D003489 ORTHO05D004109 5.9e-10 69.3 44 70.5
GSVIVG01036762001 Vitis vinifera HOM05D003489 ORTHO05D004109 5.9e-10 69.3 44 75.0
MSTRG.16098 Avicennia marina HOM05D003489 ORTHO05D004109 7.6e-10 68.9 80 53.8
CiPaw.11G061000 Carya illinoinensis HOM05D003489 ORTHO05D004109 7.6e-10 68.9 44 72.7
Duzib132G1003 Durio zibethinus HOM05D003489 ORTHO05D004109 7.6e-10 68.9 44 75.0
Thhalv10021233m.g Eutrema salsugineum HOM05D003489 ORTHO05D004109 7.6e-10 68.9 86 45.3
Hma1.2p1_0151F.1_g067260 Hydrangea macrophylla HOM05D003489 ORTHO05D004109 7.6e-10 68.9 44 68.2
Potri.012G125900 Populus trichocarpa HOM05D003489 ORTHO05D004109 7.6e-10 68.9 55 63.6
QL11p013743 Quercus lobata HOM05D003489 ORTHO05D004109 7.6e-10 68.9 74 54.1
TAR624G0253 Trochodendron aralioides HOM05D003489 ORTHO05D004109 7.6e-10 68.9 44 70.5
vmacro09770 Vaccinium macrocarpon HOM05D003489 ORTHO05D004109 7.6e-10 68.9 80 46.2
Ah.10g033720 Amaranthus hybridus HOM05D003489 ORTHO05D004109 1.0e-09 68.6 55 63.6
EL10Ac2g03234 Beta vulgaris HOM05D003489 ORTHO05D004109 1.0e-09 68.6 44 70.5
BcaB06g25510 Brassica carinata HOM05D003489 ORTHO05D004109 1.0e-09 68.6 80 48.8
A05p36670 Brassica napus HOM05D001395 ORTHO05D004109 1.0e-09 68.6 80 48.8
C05p55120 Brassica napus HOM05D001395 ORTHO05D004109 1.0e-09 68.6 80 48.8
BolC5t34180H Brassica oleracea HOM05D001395 ORTHO05D004109 1.0e-09 68.6 80 48.8
Ca_25908_v3 Cicer arietinum L. HOM05D003489 ORTHO05D004109 1.0e-09 68.6 43 69.8
Ca_30115_v3 Cicer arietinum L. HOM05D003489 ORTHO05D004109 1.0e-09 68.6 43 69.8
Haze_06096 Corylus avellana HOM05D003489 ORTHO05D044814 1.0e-09 68.6 57 61.4
FAN16G2962 Fragaria x ananassa HOM05D003489 ORTHO05D004109 1.0e-09 68.6 48 62.5
FAN21G3976 Fragaria x ananassa HOM05D003489 ORTHO05D004109 1.0e-09 68.6 44 70.5
HanXRQChr12g0381551 Helianthus annuus HOM05D003489 ORTHO05D004109 1.0e-09 68.6 87 46.0
Oeu043715.1 Olea europaea HOM05D003489 ORTHO05D004109 1.0e-09 68.6 82 50.0
unitig_578.g16335 Utricularia gibba HOM05D003489 ORTHO05D004109 1.0e-09 68.6 44 72.7
VMungo1127G1841 Vigna mungo HOM05D003489 ORTHO05D004109 1.0e-09 68.6 44 68.2
ATR0697G295 Amborella trichopoda HOM05D003489 ORTHO05D004109 1.3e-09 68.2 44 72.7
AT3G12800 Arabidopsis thaliana HOM05D003489 ORTHO05D004109 1.3e-09 68.2 80 47.5
ECA240G1189 Erigeron canadensis HOM05D003489 ORTHO05D004109 1.3e-09 68.2 55 63.6
ECA246G5026 Erigeron canadensis HOM05D003489 ORTHO05D004109 1.3e-09 68.2 57 59.6
Eucgr.D00036 Eucalyptus grandis HOM05D003489 ORTHO05D004109 1.3e-09 68.2 44 70.5
FvH4_3g14740 Fragaria vesca HOM05D003489 ORTHO05D004109 1.3e-09 68.2 44 68.2
FAN11G1209 Fragaria x ananassa HOM05D003489 ORTHO05D004109 1.3e-09 68.2 44 68.2
FAN25G2342 Fragaria x ananassa HOM05D003489 ORTHO05D004109 1.3e-09 68.2 44 68.2
Glyma.08G237400 Glycine max HOM05D003489 ORTHO05D004109 1.3e-09 68.2 44 65.9
Gohir.D12G046300 Gossypium hirsutum HOM05D003489 ORTHO05D004109 1.3e-09 68.2 44 70.5
MD05G1249900 Malus domestica HOM05D003489 ORTHO05D004109 1.3e-09 68.2 74 51.4
Rhsim04G0003000 Rhododendron simsii HOM05D003489 ORTHO05D004109 1.3e-09 68.2 80 47.5
TPR.G9418 Trifolium pratense HOM05D003489 ORTHO05D004109 1.3e-09 68.2 43 67.4
COL.COLO4_19751 Corchorus olitorius HOM05D003489 ORTHO05D004109 1.7e-09 67.8 44 68.2
Eucgr.F04461 Eucalyptus grandis HOM05D003489 ORTHO05D004109 1.7e-09 67.8 43 69.8
HanXRQChr03g0078181 Helianthus annuus HOM05D003489 ORTHO05D004109 1.7e-09 67.8 55 61.8
Lsat_1_v5_gn_7_75601 Lactuca sativa HOM05D003489 ORTHO05D004109 1.7e-09 67.8 57 61.4
MD10G1209100 Malus domestica HOM05D003489 ORTHO05D004109 1.7e-09 67.8 80 48.8
PSO541G1044 Papaver somniferum HOM05D003489 ORTHO05D004109 1.7e-09 67.8 55 61.8
PSO675G1648 Papaver somniferum HOM05D003489 ORTHO05D004109 1.7e-09 67.8 57 59.6
PSO675G6571 Papaver somniferum HOM05D003489 ORTHO05D004109 1.7e-09 67.8 57 61.4
Migut.H01667 Erythranthe guttata HOM05D003489 ORTHO05D004109 2.2e-09 67.4 80 48.8
Lsat_1_v5_gn_3_107180 Lactuca sativa HOM05D003489 ORTHO05D004109 2.2e-09 67.4 87 46.0
RcHm_v2.0_Chr6g0286111 Rosa chinensis HOM05D003489 ORTHO05D033846 2.2e-09 67.4 57 61.4
Sc18g0003310 Simmondsia chinensis HOM05D003489 ORTHO05D004109 2.2e-09 67.4 55 60.0
TAR626G0906 Trochodendron aralioides HOM05D003489 ORTHO05D004109 2.2e-09 67.4 44 68.2
BraA05t22470Z Brassica rapa HOM05D001395 ORTHO05D004109 2.9e-09 67.0 80 47.5
Hma1.2p1_0181F.1_g080070 Hydrangea macrophylla HOM05D003489 ORTHO05D004109 2.9e-09 67.0 87 46.0
MBI18_g11461_MAGBIO Magnolia biondii HOM05D003489 ORTHO05D004109 2.9e-09 67.0 57 57.9
Manes.03G069001 Manihot esculenta HOM05D003489 ORTHO05D004109 2.9e-09 67.0 44 70.5
Sed0021670 Sechium edule HOM05D003489 ORTHO05D004109 2.9e-09 67.0 57 57.9
Actinidia22416 Actinidia chinensis HOM05D003489 ORTHO05D004109 3.8e-09 66.6 42 71.4
Aa31LG8G80 Aethionema arabicum HOM05D003489 ORTHO05D004109 3.8e-09 66.6 86 43.0
Lj2A13T24 Lonicera japonica HOM05D003489 ORTHO05D004109 3.8e-09 66.6 42 69.0
Phvul.011G177250 Phaseolus vulgaris HOM05D003489 ORTHO05D004109 3.8e-09 66.6 54 59.3
Prupe.4G113900 Prunus persica HOM05D003489 ORTHO05D004109 3.8e-09 66.6 74 54.1
Solyc07g066630.4 Solanum lycopersicum HOM05D003489 ORTHO05D004109 3.8e-09 66.6 42 71.4
Sopen07g034780 Solanum pennellii HOM05D003489 ORTHO05D004109 3.8e-09 66.6 42 71.4
Migut.M01523 Erythranthe guttata HOM05D003489 ORTHO05D004109 5.0e-09 66.2 44 68.2
PSO675G0014 Papaver somniferum HOM05D003489 ORTHO05D004109 5.0e-09 66.2 57 59.6
CDE06G1011 Ceratophyllum demersum HOM05D003489 ORTHO05D004109 6.5e-09 65.9 44 68.2
FAN21G0618 Fragaria x ananassa HOM05D003489 ORTHO05D004109 6.5e-09 65.9 44 65.9
HanXRQChr03g0078191 Helianthus annuus HOM05D003489 ORTHO05D004109 6.5e-09 65.9 55 60.0
Manes.14G009200 Manihot esculenta HOM05D003489 ORTHO05D004109 6.5e-09 65.9 55 56.4
Sp3g10955 Schrenkiella parvula HOM05D003489 ORTHO05D004109 6.5e-09 65.9 43 67.4
Sp3g10960 Schrenkiella parvula HOM05D003489 ORTHO05D004109 6.5e-09 65.9 86 44.2
DCAR_019918 Daucus carota HOM05D003489 ORTHO05D004109 8.5e-09 65.5 80 45.0
CAN.G943.55 Capsicum annuum HOM05D003489 ORTHO05D004109 1.1e-08 65.1 43 69.8
ClCG09G022700 Citrullus lanatus HOM05D003489 ORTHO05D004109 1.1e-08 65.1 57 54.4
CsaV3_7G022900 Cucumis sativus L. HOM05D003489 ORTHO05D004109 1.1e-08 65.1 57 54.4
Duzib052G0366 Durio zibethinus HOM05D003489 ORTHO05D004109 1.1e-08 65.1 58 58.6
Pp3c20_21940 Physcomitrium patens HOM05D003489 ORTHO05D004109 1.1e-08 65.1 43 67.4
CANSAT80G1187 Cannabis sativa HOM05D003489 ORTHO05D004109 1.4e-08 64.7 57 61.4
Gohir.A04G050800 Gossypium hirsutum HOM05D003489 ORTHO05D004109 1.4e-08 64.7 79 46.8
Cc05_g16430 Coffea canephora HOM05D003489 ORTHO05D004109 1.9e-08 64.3 80 47.5
PSO675G9327 Papaver somniferum HOM05D003489 ORTHO05D004109 1.9e-08 64.3 55 60.0
Sed0005392 Sechium edule HOM05D003489 ORTHO05D004109 1.9e-08 64.3 55 60.0
SMO116G0107 Selaginella moellendorffii HOM05D003489 ORTHO05D004109 1.9e-08 64.3 44 65.9
MELO3C012608.2 Cucumis melo HOM05D003489 ORTHO05D004109 3.2e-08 63.5 57 54.4
PSO673G0003 Papaver somniferum HOM05D003489 ORTHO05D004109 3.2e-08 63.5 44 65.9
AagrBONN_evm.TU.Sc2ySwM_117.344 Anthoceros agrestis HOM05D003489 ORTHO05D004109 4.2e-08 63.2 43 62.8
Aqoxy1G01416 Aquilegia oxysepala HOM05D003489 ORTHO05D004109 5.5e-08 62.8 72 50.0
Os04g0614000 Oryza sativa ssp. japonica HOM05D003489 ORTHO05D004109 9.3e-08 62.0 44 61.4
DCAR_007785 Daucus carota HOM05D032355 ORTHO05D004109 2.1e-07 60.8 53 58.5
HPP92_016428 Vanilla planifolia HOM05D003489 ORTHO05D004109 2.1e-07 60.8 44 63.6
HPP92_026361 Vanilla planifolia HOM05D003489 ORTHO05D004109 2.1e-07 60.8 44 63.6
AagrBONN_evm.TU.Sc2ySwM_117.1485 Anthoceros agrestis HOM05D003489 ORTHO05D004109 2.7e-07 60.5 42 66.7
Cre17.g731850 Chlamydomonas reinhardtii HOM05D003489 ORTHO05D004109 2.7e-07 60.5 44 61.4
PSO238G0039 Papaver somniferum HOM05D003489 ORTHO05D004109 3.6e-07 60.1 57 54.4
Zm00001eb070900 Zea mays HOM05D003489 ORTHO05D004109 3.6e-07 60.1 44 63.6
CBR_g6539 Chara braunii HOM05D003489 ORTHO05D004109 7.9e-07 58.9 43 55.8


User provided reference genes

Program Settings