Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_31365 Sequoiadendron giganteum HOM05D008075 ORTHO05D010208 0.0e+00 2486.4 1675 100.0
MBI03_g11141_MAGBIO Magnolia biondii HOM05D008075 ORTHO05D010208 6.7e-44 184.5 226 46.5
Nn1g08564 Nelumbo nucifera HOM05D008075 ORTHO05D010208 9.7e-43 180.6 238 45.4
ATR0171G010 Amborella trichopoda HOM05D008075 ORTHO05D010208 6.3e-42 177.9 225 44.4
Nn5g27987 Nelumbo nucifera HOM05D008075 ORTHO05D010208 6.9e-41 174.5 278 42.1
TAR376G0152 Trochodendron aralioides HOM05D008075 ORTHO05D010208 1.5e-40 173.3 183 49.2
Aqoxy2G00609 Aquilegia oxysepala HOM05D008075 ORTHO05D010208 3.4e-40 172.2 219 43.8
Cc02_g33950 Coffea canephora HOM05D008075 ORTHO05D010208 3.8e-39 168.7 214 44.9
SMO266G0073 Selaginella moellendorffii HOM05D008075 ORTHO05D010208 3.8e-39 168.7 208 44.7
HPP92_002184 Vanilla planifolia HOM05D008075 ORTHO05D010208 8.5e-39 167.5 162 49.4
Zm00001eb054280 Zea mays HOM05D008075 ORTHO05D010208 1.9e-38 166.4 256 41.0
Os03g0703300 Oryza sativa ssp. japonica HOM05D008075 ORTHO05D010208 2.5e-38 166.0 296 38.2
ECA233G5565 Erigeron canadensis HOM05D008075 ORTHO05D010208 7.2e-38 164.5 169 51.5
Lsat_1_v5_gn_5_69300 Lactuca sativa HOM05D008075 ORTHO05D010208 7.2e-38 164.5 222 43.7
PSO782G2813 Papaver somniferum HOM05D008075 ORTHO05D010208 9.4e-38 164.1 269 38.7
QL10p040186 Quercus lobata HOM05D008075 ORTHO05D010208 9.4e-38 164.1 182 45.1
SGA_v2.0_scaffold54G19596 Striga asiatica HOM05D008075 ORTHO05D010208 1.2e-37 163.7 240 41.7
GSVIVG01022404001 Vitis vinifera HOM05D008075 ORTHO05D010208 1.2e-37 163.7 187 47.6
CiPaw.03G254600 Carya illinoinensis HOM05D008075 ORTHO05D010208 2.1e-37 162.9 170 48.8
Dinv08171 Davidia involucrata HOM05D008075 ORTHO05D010208 3.6e-37 162.2 173 46.2
Solyc08g080000.3 Solanum lycopersicum HOM05D008075 ORTHO05D010208 3.6e-37 162.2 214 42.1
Potri.004G140000 Populus trichocarpa HOM05D008075 ORTHO05D010208 6.1e-37 161.4 174 46.6
Sabra04G0092100 Salix brachista HOM05D008075 ORTHO05D010208 2.3e-36 159.5 181 44.8
Migut.H00807 Erythranthe guttata HOM05D008075 ORTHO05D010208 3.0e-36 159.1 240 42.1
Oeu011019.1 Olea europaea HOM05D002427 ORTHO05D002818 3.0e-36 159.1 223 43.5
Lj4g0013275 Lotus japonicus HOM05D008075 ORTHO05D010208 5.1e-36 158.3 237 37.6
Sopen08g028360 Solanum pennellii HOM05D008075 ORTHO05D010208 5.1e-36 158.3 214 43.0
Ciclev10024878m.g Citrus clementina HOM05D008075 ORTHO05D010208 6.7e-36 157.9 210 41.9
EL10Ac4g08956 Beta vulgaris HOM05D008075 ORTHO05D010208 8.8e-36 157.5 172 43.6
HanXRQChr15g0468991 Helianthus annuus HOM05D008075 ORTHO05D010208 2.0e-35 156.4 288 38.9
Medtr8g095160 Medicago truncatula HOM05D008075 ORTHO05D010208 2.0e-35 156.4 189 43.9
Nitab4.5_0005586g0040 Nicotiana tabacum HOM05D008075 ORTHO05D010208 2.0e-35 156.4 213 43.7
Peaxi162Scf00658g00065 Petunia axillaris HOM05D008075 ORTHO05D010208 2.0e-35 156.4 255 38.8
Hund06889 Selenicereus undatus HOM05D008075 ORTHO05D010208 2.0e-35 156.4 187 42.8
AUR62039042 Chenopodium quinoa HOM05D008075 ORTHO05D010208 2.6e-35 156.0 190 44.2
CSS0037312 Camellia sinensis var. sinensis HOM05D008075 ORTHO05D010208 4.4e-35 155.2 297 36.4
PGSC0003DMG400022727 Solanum tuberosum HOM05D008075 ORTHO05D010208 4.4e-35 155.2 214 42.5
PSO170G3563 Papaver somniferum HOM05D008075 ORTHO05D010208 9.7e-35 154.1 269 37.2
Sc09g0004370 Simmondsia chinensis HOM05D008075 ORTHO05D010208 1.3e-34 153.7 217 41.0
TWI75G0788 Tripterygium wilfordii HOM05D008075 ORTHO05D010208 3.7e-34 152.1 212 41.5
TPR.G33422 Trifolium pratense HOM05D008075 ORTHO05D010208 6.3e-34 151.4 169 43.8
Phvul.002G277500 Phaseolus vulgaris HOM05D008075 ORTHO05D010208 1.8e-33 149.8 162 44.4
Rhsim08G0001000 Rhododendron simsii HOM05D008075 ORTHO05D010208 2.4e-33 149.4 259 36.3
VMungo0251G2353 Vigna mungo HOM05D008075 ORTHO05D010208 4.1e-33 148.7 207 40.6
arahy.Tifrunner.gnm1.ann1.F3CBX5 Arachis hypogaea HOM05D008075 ORTHO05D010208 7.0e-33 147.9 170 45.3
Psat7g041720 Pisum sativum HOM05D008075 ORTHO05D010208 9.1e-33 147.5 208 41.8
Glyma.05G197100 Glycine max HOM05D008075 ORTHO05D010208 1.2e-32 147.1 242 34.3
Mapoly0089s0038 Marchantia polymorpha HOM05D008075 ORTHO05D010208 1.5e-32 146.7 161 46.0
Ah.06g191710 Amaranthus hybridus HOM05D008075 ORTHO05D010208 3.5e-32 145.6 172 40.7
THA.LOC104819473 Tarenaya hassleriana HOM05D008075 ORTHO05D010208 3.5e-32 145.6 300 33.0
Manes.12G084200 Manihot esculenta HOM05D008075 ORTHO05D010208 2.2e-31 142.9 295 34.9
Glyma.08G004500 Glycine max HOM05D008075 ORTHO05D010208 2.5e-30 139.4 226 35.0
Pp3c6_3110 Physcomitrium patens HOM05D008075 ORTHO05D010208 3.2e-30 139.0 224 37.1
Pp3c16_21630 Physcomitrium patens HOM05D008075 ORTHO05D010208 4.2e-30 138.7 187 42.2
arahy.Tifrunner.gnm1.ann1.BIR6X5 Arachis hypogaea HOM05D008075 ORTHO05D010208 1.2e-29 137.1 187 41.2
Lalb_Chr12g0202841 Lupinus albus HOM05D008075 ORTHO05D010208 8.0e-29 134.4 208 34.1
Ca_17596_v3 Cicer arietinum L. HOM05D000484 ORTHO05D010208 1.0e-28 134.0 173 41.0
Nitab4.5_0000947g0070 Nicotiana tabacum HOM05D008075 ORTHO05D010208 8.8e-28 131.0 214 39.7
Pp3c6_900 Physcomitrium patens HOM05D008075 ORTHO05D010208 2.8e-26 125.9 213 35.7
Pp3c6_920 Physcomitrium patens HOM05D008075 ORTHO05D010208 2.8e-26 125.9 213 35.7
SalBow1G7185 Salvia bowleyana HOM05D008075 ORTHO05D010208 1.6e-24 120.2 217 36.4
AUR62004796 Chenopodium quinoa HOM05D008075 ORTHO05D010208 7.7e-24 117.9 187 38.0
CAN.G630.6 Capsicum annuum HOM05D008075 ORTHO05D010208 1.1e-22 114.0 179 40.2
CBR_g31168 Chara braunii HOM05D008075 ORTHO05D010208 4.2e-14 85.5 150 37.3
AagrBONN_evm.TU.Sc2ySwM_362.1056 Anthoceros agrestis HOM05D008075 ORTHO05D010208 5.5e-14 85.1 78 53.8
Nn5g27981 Nelumbo nucifera HOM05D008075 ORTHO05D010208 2.6e-11 76.3 98 44.9
CBR_g10951 Chara braunii HOM05D008075 ORTHO05D010208 5.7e-11 75.1 140 33.6
Nn5g28099 Nelumbo nucifera HOM05D004492 ORTHO05D005602 9.1e-09 67.8 70 50.0
SEGI_26700 Sequoiadendron giganteum HOM05D000422 ORTHO05D000002 2.0e-08 66.6 58 60.3


User provided reference genes

Program Settings