Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 0.0e+00 1331.6 665 100.0
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 0.0e+00 1331.6 665 100.0
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 0.0e+00 1324.3 662 99.8
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 5.1e-189 665.2 666 51.8
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 7.2e-183 644.8 666 52.6
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 9.1e-178 627.9 671 51.0
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 3.8e-176 622.5 669 51.3
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 1.8e-173 613.6 668 50.1
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 1.2e-172 610.9 642 50.0
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 9.7e-172 607.8 642 51.9
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 2.8e-171 606.3 669 48.7
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 6.3e-171 605.1 680 48.1
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 6.3e-171 605.1 640 49.8
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 1.8e-170 603.6 669 49.5
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 1.8e-170 603.6 641 49.9
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 1.0e-168 597.8 638 49.7
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 1.7e-168 597.0 651 49.0
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 2.5e-167 593.2 642 48.3
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 5.5e-167 592.0 672 49.3
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 1.2e-166 590.9 670 48.7
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 2.1e-166 590.1 645 48.2
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 3.6e-166 589.3 645 48.2
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 4.7e-166 589.0 647 49.5
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 4.7e-166 589.0 645 48.4
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 6.1e-166 588.6 650 48.9
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 1.0e-165 587.8 642 48.6
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 2.6e-164 583.2 643 48.8
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 7.5e-164 581.6 648 48.8
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 7.5e-164 581.6 648 48.8
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 4.8e-163 578.9 641 47.3
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 6.3e-163 578.6 671 47.8
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 2.4e-162 576.6 706 46.9
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 2.4e-162 576.6 649 47.0
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 7.0e-162 575.1 651 48.1
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 2.0e-161 573.5 638 47.8
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 2.7e-161 573.2 635 48.2
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 3.5e-161 572.8 658 47.7
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 4.5e-161 572.4 636 49.2
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 4.5e-161 572.4 666 47.3
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 5.9e-161 572.0 647 48.7
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 1.3e-160 570.9 640 49.1
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 1.7e-160 570.5 640 48.0
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 1.7e-160 570.5 645 47.4
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 2.3e-160 570.1 640 48.3
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 6.6e-160 568.5 645 49.0
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 6.6e-160 568.5 646 47.2
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 8.6e-160 568.2 652 47.7
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.5e-159 567.4 645 49.1
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 1.9e-159 567.0 642 48.8
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 3.3e-159 566.2 678 46.2
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 7.2e-159 565.1 640 48.3
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 1.2e-158 564.3 645 48.7
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 1.2e-158 564.3 645 46.7
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 1.2e-158 564.3 641 46.8
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 2.1e-158 563.5 639 47.3
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 3.6e-158 562.8 644 47.2
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 6.1e-158 562.0 640 47.5
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 1.0e-157 561.2 645 48.4
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 1.4e-157 560.8 645 45.9
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 1.8e-157 560.5 640 47.5
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 2.3e-157 560.1 644 47.7
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 2.3e-157 560.1 636 48.0
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 3.0e-157 559.7 640 47.5
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 2.0e-156 557.0 650 46.9
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 7.5e-156 555.1 641 47.4
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 9.8e-156 554.7 640 47.2
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 1.3e-155 554.3 640 47.5
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 1.3e-155 554.3 635 47.4
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 1.7e-155 553.9 645 45.6
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 2.8e-155 553.1 639 46.5
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 2.4e-154 550.1 639 46.3
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 2.7e-153 546.6 643 46.7
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 3.5e-153 546.2 648 45.7
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 4.5e-153 545.8 650 47.5
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 7.8e-153 545.0 656 46.5
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 1.0e-152 544.7 656 44.8
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 3.9e-152 542.7 649 46.5
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 3.9e-152 542.7 650 46.8
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 3.3e-151 539.7 642 46.4
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 9.5e-151 538.1 652 45.1
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 8.0e-150 535.0 650 47.7
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 8.0e-150 535.0 645 44.8
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 1.0e-149 534.6 639 47.7
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 3.1e-149 533.1 640 45.0
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 4.0e-149 532.7 639 45.5
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 2.0e-148 530.4 657 46.6
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 5.8e-148 528.9 645 44.7
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 7.5e-148 528.5 650 45.4
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 6.4e-147 525.4 639 46.8
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 5.4e-146 522.3 704 42.6
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 7.0e-146 521.9 648 45.4
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 5.0e-144 515.8 647 45.1
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 1.2e-142 511.1 641 46.2
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 4.7e-142 509.2 640 43.6
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 6.2e-142 508.8 543 50.8
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 8.9e-141 505.0 587 47.7
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 4.4e-140 502.7 527 51.0
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 2.9e-139 500.0 641 44.1
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 4.9e-139 499.2 600 45.5
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 1.1e-138 498.0 673 44.4
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 4.7e-134 482.6 547 45.9
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 4.7e-134 482.6 683 42.5
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 7.5e-132 475.3 603 46.1
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 5.1e-128 462.6 641 41.8
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 7.6e-124 448.7 642 40.7
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 1.1e-122 444.9 511 48.1
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 2.4e-122 443.7 642 41.7
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 1.9e-119 434.1 505 46.3
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 5.6e-119 432.6 640 40.5
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 8.1e-118 428.7 640 38.6
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 1.4e-114 417.9 434 51.6
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 3.5e-113 413.3 402 53.0
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 1.3e-112 411.4 645 39.4
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 2.0e-108 397.5 771 34.2
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 3.4e-76 290.4 415 42.9
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 1.2e-73 282.0 452 37.8
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.7e-73 280.8 418 41.4
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 3.3e-71 273.9 705 31.9
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 5.3e-69 266.5 261 51.3
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 1.5e-55 221.9 398 35.4
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 3.6e-49 200.7 274 38.7
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 3.6e-41 174.1 166 53.6
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 4.0e-40 170.6 131 63.4
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.1e-37 162.5 705 25.7
arahy.Tifrunner.gnm1.ann1.T7I6MJ Arachis hypogaea HOM05D005422 ORTHO05D006578 8.6e-35 152.9 239 39.7
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 5.8e-31 140.2 132 52.3
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 2.4e-29 134.8 130 53.8
HPP92_024297 Vanilla planifolia HOM05D005422 ORTHO05D006578 1.5e-23 115.5 162 40.1
arahy.Tifrunner.gnm1.ann1.IS07F8 Arachis hypogaea HOM05D005422 ORTHO05D006578 4.1e-21 107.5 95 49.5
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 6.6e-19 100.1 177 35.6
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 1.1e-18 99.4 165 34.5
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 2.2e-14 85.1 131 42.7
arahy.Tifrunner.gnm1.ann1.SR9TX3 Arachis hypogaea HOM05D005422 ORTHO05D001437 6.4e-14 83.6 84 51.2
unitig_35.g30204 Utricularia gibba HOM05D005422 ORTHO05D006578 3.2e-13 81.3 130 36.9
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 2.7e-12 78.2 106 42.5
MBI10_g35396_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 4.3e-10 70.9 43 72.1
Sabra08G0136500 Salix brachista HOM05D005422 ORTHO05D006578 1.1e-08 66.2 80 48.8
VMungo1215G3139 Vigna mungo HOM05D003635 ORTHO05D004283 8.9e-08 63.2 97 38.1
arahy.Tifrunner.gnm1.ann1.L1WA2E Arachis hypogaea HOM05D001562 ORTHO05D001437 2.0e-07 62.0 68 48.5
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 8.4e-06 56.6 152 29.6


User provided reference genes

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