Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 3.4e-95 351.7 178 100.0
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 4.5e-15 85.5 63 66.7
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 1.0e-14 84.3 63 63.5
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 1.0e-14 84.3 63 63.5
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 1.0e-14 84.3 63 63.5
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 1.0e-14 84.3 60 70.0
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 1.3e-14 84.0 111 45.9
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 1.3e-14 84.0 63 65.1
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 1.7e-14 83.6 63 65.1
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 2.2e-14 83.2 63 63.5
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 2.2e-14 83.2 56 69.6
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 2.2e-14 83.2 56 69.6
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 2.9e-14 82.8 63 63.5
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 2.9e-14 82.8 64 60.9
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 3.8e-14 82.4 63 61.9
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 3.8e-14 82.4 84 53.6
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 6.5e-14 81.6 63 61.9
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 8.5e-14 81.3 63 63.5
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 8.5e-14 81.3 63 61.9
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 8.5e-14 81.3 60 65.0
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 1.1e-13 80.9 60 65.0
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 1.1e-13 80.9 63 61.9
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 1.1e-13 80.9 60 63.3
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.1e-13 80.9 81 53.1
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 1.4e-13 80.5 63 61.9
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 1.4e-13 80.5 63 60.3
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 1.4e-13 80.5 83 51.8
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 1.4e-13 80.5 75 56.0
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 1.9e-13 80.1 94 52.1
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.9e-13 80.1 63 60.3
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 1.9e-13 80.1 63 61.9
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 1.9e-13 80.1 63 60.3
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.5e-13 79.7 67 56.7
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 2.5e-13 79.7 60 61.7
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 2.5e-13 79.7 56 64.3
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 2.5e-13 79.7 63 60.3
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 3.2e-13 79.3 60 65.0
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 3.2e-13 79.3 90 51.1
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 3.2e-13 79.3 93 50.5
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 3.2e-13 79.3 81 53.1
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 4.2e-13 79.0 60 61.7
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 4.2e-13 79.0 63 58.7
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 5.5e-13 78.6 79 49.4
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 5.5e-13 78.6 59 64.4
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 5.5e-13 78.6 60 63.3
SEGI_37505 Sequoiadendron giganteum HOM05D006648 ORTHO05D025756 5.5e-13 78.6 63 69.8
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 5.5e-13 78.6 65 58.5
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 5.5e-13 78.6 60 63.3
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 5.5e-13 78.6 60 63.3
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 7.2e-13 78.2 63 58.7
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 7.2e-13 78.2 63 58.7
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 7.2e-13 78.2 63 58.7
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 7.2e-13 78.2 63 58.7
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 7.2e-13 78.2 63 58.7
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 7.2e-13 78.2 63 60.3
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 7.2e-13 78.2 57 64.9
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 9.4e-13 77.8 91 50.5
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 9.4e-13 77.8 62 61.3
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 9.4e-13 77.8 60 60.0
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 9.4e-13 77.8 61 65.6
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 9.4e-13 77.8 153 38.6
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 9.4e-13 77.8 66 59.1
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 1.2e-12 77.4 91 50.5
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 1.2e-12 77.4 63 60.3
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 1.2e-12 77.4 63 58.7
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.6e-12 77.0 63 57.1
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 1.6e-12 77.0 63 58.7
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 1.6e-12 77.0 60 58.3
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 2.1e-12 76.6 68 54.4
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 2.7e-12 76.3 63 58.7
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 3.6e-12 75.9 63 58.7
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 3.6e-12 75.9 79 53.2
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 4.7e-12 75.5 55 65.5
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 4.7e-12 75.5 63 57.1
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 6.1e-12 75.1 63 57.1
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 6.1e-12 75.1 56 62.5
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 8.0e-12 74.7 63 57.1
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 8.0e-12 74.7 63 57.1
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 8.0e-12 74.7 51 70.6
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 8.0e-12 74.7 63 58.7
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 8.0e-12 74.7 97 42.3
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 8.0e-12 74.7 63 57.1
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 8.0e-12 74.7 57 59.6
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 1.0e-11 74.3 57 61.4
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 1.0e-11 74.3 85 48.2
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 1.0e-11 74.3 85 48.2
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 1.0e-11 74.3 55 63.6
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 1.0e-11 74.3 89 48.3
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 1.0e-11 74.3 55 63.6
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 1.0e-11 74.3 55 63.6
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 1.4e-11 73.9 64 54.7
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 1.4e-11 73.9 52 65.4
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.4e-11 73.9 55 61.8
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.4e-11 73.9 55 61.8
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 1.8e-11 73.6 60 58.3
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.8e-11 73.6 63 57.1
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 1.8e-11 73.6 63 55.6
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 1.8e-11 73.6 60 56.7
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 2.3e-11 73.2 62 58.1
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 3.0e-11 72.8 93 45.2
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 3.0e-11 72.8 66 51.5
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 3.0e-11 72.8 63 55.6
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 3.9e-11 72.4 66 51.5
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 3.9e-11 72.4 63 54.0
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 3.9e-11 72.4 63 54.0
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 3.9e-11 72.4 63 54.0
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 3.9e-11 72.4 60 56.7
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 3.9e-11 72.4 63 57.1
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 5.2e-11 72.0 63 54.0
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 5.2e-11 72.0 63 55.6
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 6.7e-11 71.6 66 51.5
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 6.7e-11 71.6 66 51.5
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 6.7e-11 71.6 66 51.5
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 6.7e-11 71.6 64 53.1
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 8.8e-11 71.2 63 54.0
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 8.8e-11 71.2 93 45.2
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 8.8e-11 71.2 63 54.0
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 8.8e-11 71.2 93 44.1
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 1.5e-10 70.5 60 55.0
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 2.0e-10 70.1 66 50.0
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.0e-10 70.1 55 60.0
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 2.6e-10 69.7 55 58.2
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 2.6e-10 69.7 64 51.6
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 3.3e-10 69.3 66 50.0
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 3.3e-10 69.3 66 59.1
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 4.4e-10 68.9 63 52.4
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 4.4e-10 68.9 63 52.4
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 4.4e-10 68.9 63 54.0
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 5.7e-10 68.6 64 53.1
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 7.4e-10 68.2 53 60.4
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 9.7e-10 67.8 54 57.4
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.3e-09 67.4 55 56.4
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 1.3e-09 67.4 63 52.4
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 1.7e-09 67.0 93 44.1
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 3.7e-09 65.9 60 55.0
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 3.7e-09 65.9 73 49.3
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 4.8e-09 65.5 74 43.2
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 6.3e-09 65.1 63 50.8
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 8.2e-09 64.7 81 43.2
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 8.2e-09 64.7 58 55.2
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 2.4e-08 63.2 50 60.0
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 2.4e-08 63.2 60 48.3
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 5.3e-08 62.0 61 49.2
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 9.1e-08 61.2 94 43.6
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 1.6e-07 60.5 79 46.8
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 2.6e-07 59.7 52 53.8
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 2.6e-07 59.7 56 55.4
SEGI_35364 Sequoiadendron giganteum HOM05D004902 ORTHO05D025756 2.6e-07 59.7 33 81.8
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 4.5e-07 58.9 56 53.6
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 7.7e-07 58.2 45 62.2
SEGI_25106 Sequoiadendron giganteum HOM05D004779 ORTHO05D025756 1.0e-06 57.8 34 85.3
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 3.8e-06 55.8 52 48.1


User provided reference genes

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