Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_31260 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 8.6e-102 373.6 184 100.0
Manes.15G015300 Manihot esculenta HOM05D005803 ORTHO05D008090 1.7e-62 243.0 182 64.3
FAN22G2255 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.9e-61 239.6 180 62.8
FAN07G1352 Fragaria x ananassa HOM05D005803 ORTHO05D008090 3.3e-61 238.8 180 62.8
CANSAT78G2259 Cannabis sativa HOM05D005803 ORTHO05D008090 4.3e-61 238.4 180 62.2
FvH4_4g17530 Fragaria vesca HOM05D005803 ORTHO05D008090 5.6e-61 238.0 180 62.2
FAN12G3070 Fragaria x ananassa HOM05D005803 ORTHO05D008090 5.6e-61 238.0 180 62.2
DCAR_027096 Daucus carota HOM05D005803 ORTHO05D008090 7.3e-61 237.7 180 62.2
Nn3g21354 Nelumbo nucifera HOM05D005803 ORTHO05D008090 7.3e-61 237.7 174 64.4
FAN12G0977 Fragaria x ananassa HOM05D005803 ORTHO05D008090 9.6e-61 237.3 180 62.2
Prupe.1G140200 Prunus persica HOM05D005803 ORTHO05D008090 9.6e-61 237.3 180 61.7
Dinv44408 Davidia involucrata HOM05D005803 ORTHO05D008090 1.3e-60 236.9 174 64.4
Thecc.04G279700 Theobroma cacao HOM05D005803 ORTHO05D008090 1.3e-60 236.9 182 62.1
Ca_00559_v3 Cicer arietinum L. HOM05D005803 ORTHO05D008090 2.1e-60 236.1 180 61.7
MD16G1173300 Malus domestica HOM05D005803 ORTHO05D008090 2.1e-60 236.1 180 61.7
RcHm_v2.0_Chr4g0421441 Rosa chinensis HOM05D005803 ORTHO05D008090 2.1e-60 236.1 180 62.2
CiPaw.01G151500 Carya illinoinensis HOM05D005803 ORTHO05D008090 3.6e-60 235.3 180 60.6
Psat1g187960 Pisum sativum HOM05D005803 ORTHO05D008090 3.6e-60 235.3 180 61.1
TAR365G0996 Trochodendron aralioides HOM05D005803 ORTHO05D008090 6.2e-60 234.6 174 64.4
Cpa.g.sc1214.2 Carica papaya HOM05D005803 ORTHO05D008090 8.1e-60 234.2 183 61.2
Ciclev10004654m.g Citrus clementina HOM05D005803 ORTHO05D008090 8.1e-60 234.2 180 61.7
Potri.008G215100 Populus trichocarpa HOM05D005803 ORTHO05D008090 1.1e-59 233.8 182 61.0
arahy.Tifrunner.gnm1.ann1.7QB25Q Arachis hypogaea HOM05D005803 ORTHO05D008090 1.4e-59 233.4 180 62.2
arahy.Tifrunner.gnm1.ann1.FSUI8I Arachis hypogaea HOM05D005803 ORTHO05D008090 1.4e-59 233.4 180 62.2
Glyma.13G216500 Glycine max HOM05D005803 ORTHO05D008090 1.4e-59 233.4 180 61.7
Glyma.15G096000 Glycine max HOM05D005803 ORTHO05D008090 1.4e-59 233.4 180 61.1
Lj6g0003207 Lotus japonicus HOM05D005803 ORTHO05D008090 1.4e-59 233.4 180 60.6
vmacro22476 Vaccinium macrocarpon HOM05D005803 ORTHO05D008090 1.4e-59 233.4 174 62.6
Sc19g0005000 Simmondsia chinensis HOM05D005803 ORTHO05D008090 1.8e-59 233.0 180 61.7
VMungo0540G0998 Vigna mungo HOM05D005803 ORTHO05D008090 1.8e-59 233.0 180 61.1
Cc03_g02160 Coffea canephora HOM05D005803 ORTHO05D008090 2.4e-59 232.6 174 63.2
COL.COLO4_13910 Corchorus olitorius HOM05D005803 ORTHO05D008090 2.4e-59 232.6 182 61.5
Lalb_Chr18g0055621 Lupinus albus HOM05D005803 ORTHO05D008090 2.4e-59 232.6 180 60.0
Sabra08G0155700 Salix brachista HOM05D005803 ORTHO05D008090 2.4e-59 232.6 182 61.0
Atru.chr4.2785 Acer truncatum HOM05D005803 ORTHO05D008090 3.1e-59 232.3 174 62.6
Duzib151G0664 Durio zibethinus HOM05D005803 ORTHO05D008090 3.1e-59 232.3 182 61.5
Hma1.2p1_0698F.1_g205430 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 3.1e-59 232.3 174 62.1
Hma1.2p1_0698F.1_g205440 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 3.1e-59 232.3 174 62.1
Medtr2g019850 Medicago truncatula HOM05D005803 ORTHO05D008090 3.1e-59 232.3 180 60.6
Phvul.006G162900 Phaseolus vulgaris HOM05D005803 ORTHO05D008090 4.0e-59 231.9 180 60.6
GSVIVG01017783001 Vitis vinifera HOM05D005803 ORTHO05D008090 6.9e-59 231.1 174 62.1
Cfa015360 Carpinus fangiana HOM05D005803 ORTHO05D008090 9.0e-59 230.7 182 59.9
Lj6C671G13 Lonicera japonica HOM05D005803 ORTHO05D008090 1.2e-58 230.3 180 62.2
Sopen01g029400 Solanum pennellii HOM05D005803 ORTHO05D008090 1.2e-58 230.3 174 62.6
Pp3c23_6980 Physcomitrium patens HOM05D005803 ORTHO05D008090 1.5e-58 229.9 180 58.9
SGA_v2.0_scaffold57G20231 Striga asiatica HOM05D005803 ORTHO05D008090 1.5e-58 229.9 180 60.6
Gorai.011G187600 Gossypium raimondii HOM05D005803 ORTHO05D008090 2.0e-58 229.6 182 59.9
Mapoly0073s0077 Marchantia polymorpha HOM05D005803 ORTHO05D008090 2.0e-58 229.6 173 63.0
Gohir.A10G161600 Gossypium hirsutum HOM05D005803 ORTHO05D008090 2.6e-58 229.2 182 59.9
MD13G1171800 Malus domestica HOM05D005803 ORTHO05D008090 2.6e-58 229.2 180 60.6
SMO119G0467 Selaginella moellendorffii HOM05D005803 ORTHO05D008090 2.6e-58 229.2 180 61.1
CAN.G223.20 Capsicum annuum HOM05D005803 ORTHO05D008090 3.4e-58 228.8 174 60.9
CARHR133850 Cardamine hirsuta HOM05D005803 ORTHO05D008090 5.8e-58 228.0 183 60.7
PGR031G1735 Punica granatum HOM05D005803 ORTHO05D008090 5.8e-58 228.0 182 59.9
AUR62043505 Chenopodium quinoa HOM05D005803 ORTHO05D008090 9.9e-58 227.3 180 60.6
QL06p007721 Quercus lobata HOM05D005803 ORTHO05D008090 9.9e-58 227.3 180 58.3
Aqoxy5G00678 Aquilegia oxysepala HOM05D005803 ORTHO05D008090 2.2e-57 226.1 174 61.5
ATR0706G085 Amborella trichopoda HOM05D005803 ORTHO05D008090 2.9e-57 225.7 174 59.2
AagrBONN_evm.TU.Sc2ySwM_228.1968 Anthoceros agrestis HOM05D005803 ORTHO05D008090 3.8e-57 225.3 180 61.1
CSS0017376 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 3.8e-57 225.3 180 58.3
CSS0035312 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 3.8e-57 225.3 180 58.3
Lsat_1_v5_gn_5_69681 Lactuca sativa HOM05D005803 ORTHO05D008090 3.8e-57 225.3 174 62.1
Actinidia40241 Actinidia chinensis HOM05D005803 ORTHO05D008090 6.4e-57 224.6 174 61.5
Potri.010G022100 Populus trichocarpa HOM05D005803 ORTHO05D008090 6.4e-57 224.6 182 59.3
Eucgr.B01277 Eucalyptus grandis HOM05D005803 ORTHO05D008090 8.4e-57 224.2 174 61.5
HanXRQChr13g0410111 Helianthus annuus HOM05D005803 ORTHO05D008090 1.4e-56 223.4 174 60.9
AT2G39090 Arabidopsis thaliana HOM05D005803 ORTHO05D008090 1.9e-56 223.0 183 59.6
THA.LOC104820247 Tarenaya hassleriana HOM05D005803 ORTHO05D008090 3.2e-56 222.2 183 60.1
AL4G36390 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 4.2e-56 221.9 183 59.6
Migut.G00189 Erythranthe guttata HOM05D005803 ORTHO05D008090 4.2e-56 221.9 174 59.8
TWI09G0274 Tripterygium wilfordii HOM05D005803 ORTHO05D008090 4.2e-56 221.9 179 59.2
MSTRG.3937 Avicennia marina HOM05D005803 ORTHO05D008090 5.4e-56 221.5 174 59.8
Carub.0004s2114 Capsella rubella HOM05D005803 ORTHO05D008090 9.3e-56 220.7 183 59.6
CBR_g37168 Chara braunii HOM05D005803 ORTHO05D000048 9.3e-56 220.7 180 57.8
Peaxi162Scf00386g00615 Petunia axillaris HOM05D005803 ORTHO05D008090 9.3e-56 220.7 174 60.9
Rhsim04G0218200 Rhododendron simsii HOM05D005803 ORTHO05D008090 9.3e-56 220.7 202 55.0
Sed0014775 Sechium edule HOM05D005803 ORTHO05D008090 9.3e-56 220.7 180 57.8
EL10Ac3g06553 Beta vulgaris HOM05D005803 ORTHO05D008090 1.2e-55 220.3 180 58.3
BcaB02g09144 Brassica carinata HOM05D005803 ORTHO05D008090 1.2e-55 220.3 183 59.0
BcaC02g12039 Brassica carinata HOM05D005803 ORTHO05D008090 1.2e-55 220.3 183 59.0
CsaV3_6G017350 Cucumis sativus L. HOM05D005803 ORTHO05D008090 2.7e-55 219.2 180 57.2
PSO832G0201 Papaver somniferum HOM05D005803 ORTHO05D008090 7.9e-55 217.6 174 59.2
Sp4g21440 Schrenkiella parvula HOM05D005803 ORTHO05D008090 1.0e-54 217.2 183 59.0
A05p07190 Brassica napus HOM05D005803 ORTHO05D008090 3.0e-54 215.7 184 58.7
C04p08600 Brassica napus HOM05D005803 ORTHO05D008090 3.0e-54 215.7 184 58.7
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 3.0e-54 215.7 184 58.7
BraA05t19684Z Brassica rapa HOM05D005803 ORTHO05D008090 3.0e-54 215.7 184 58.7
Thhalv10017916m.g Eutrema salsugineum HOM05D005803 ORTHO05D008090 3.9e-54 215.3 183 58.5
Ah.13g074480 Amaranthus hybridus HOM05D005803 ORTHO05D008090 6.6e-54 214.5 174 59.2
PSO210G1989 Papaver somniferum HOM05D005803 ORTHO05D008090 8.7e-54 214.2 174 58.6
Os05g0149900 Oryza sativa ssp. japonica HOM05D005803 ORTHO05D008090 1.5e-53 213.4 178 57.9
Aa31LG5G20510 Aethionema arabicum HOM05D005803 ORTHO05D008090 2.5e-53 212.6 197 55.3
Haze_01246 Corylus avellana HOM05D005803 ORTHO05D008090 2.5e-53 212.6 221 49.8
unitig_26.g9058 Utricularia gibba HOM05D005803 ORTHO05D008090 6.2e-52 208.0 180 52.8
ClCG06G005310 Citrullus lanatus HOM05D005803 ORTHO05D008090 3.1e-51 205.7 205 51.2
Nitab4.5_0000829g0230 Nicotiana tabacum HOM05D005803 ORTHO05D008090 1.2e-50 203.8 167 59.3
HPP92_015179 Vanilla planifolia HOM05D005803 ORTHO05D008090 1.2e-50 203.8 174 55.7
CDE06G0920 Ceratophyllum demersum HOM05D005803 ORTHO05D008090 2.2e-49 199.5 174 55.7
Nitab4.5_0000644g0090 Nicotiana tabacum HOM05D005803 ORTHO05D008090 9.3e-48 194.1 173 57.2
Gohir.D10G168100 Gossypium hirsutum HOM05D005803 ORTHO05D008090 1.6e-47 193.4 182 54.9
MBI19_g01944_MAGBIO Magnolia biondii HOM05D005803 ORTHO05D008090 1.3e-46 190.3 174 56.3
Oeu032270.1 Olea europaea HOM05D005803 ORTHO05D008090 1.5e-45 186.8 145 60.0
TPR.G1478 Trifolium pratense HOM05D005803 ORTHO05D008090 6.2e-44 181.4 139 60.4
MELO3C021349.2 Cucumis melo HOM05D005803 ORTHO05D008090 7.6e-42 174.5 208 45.7
Hma1.2p1_2251F.1_g318140 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.0e-41 174.1 130 61.5
Zm00001eb418180 Zea mays HOM05D005803 ORTHO05D008090 3.8e-41 172.2 140 57.9
AUR62042651 Chenopodium quinoa HOM05D005803 ORTHO05D008090 4.6e-39 165.2 154 53.9
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 1.0e-30 137.5 186 44.6
ECA240G2219 Erigeron canadensis HOM05D005803 ORTHO05D008090 2.7e-23 112.8 127 47.2
MCO16G459 Micromonas commoda HOM05D005803 ORTHO05D008090 7.4e-21 104.8 184 35.3
Hma1.2p1_0055F.1_g031500 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 9.1e-19 97.8 103 49.5
Atru.chr4.2782 Acer truncatum HOM05D005803 ORTHO05D008090 1.3e-09 67.4 87 44.8
THA.LOC104804009 Tarenaya hassleriana HOM05D003301 ORTHO05D003665 2.1e-07 60.1 147 27.9
TPR.G35525 Trifolium pratense HOM05D005803 ORTHO05D008090 2.7e-07 59.7 45 57.8
Hma1.2p1_1012F.1_g247600 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 3.6e-07 59.3 91 38.5
TPR.G29241 Trifolium pratense HOM05D005803 ORTHO05D008090 1.0e-06 57.8 46 56.5
Aa31LG8G3460 Aethionema arabicum HOM05D003301 ORTHO05D003665 3.0e-06 56.2 127 28.3
Duzib150G0839 Durio zibethinus HOM05D003301 ORTHO05D003665 3.0e-06 56.2 124 29.0
THA.LOC104814565 Tarenaya hassleriana HOM05D003301 ORTHO05D003665 3.0e-06 56.2 160 25.6
Hund02477 Selenicereus undatus HOM05D003301 ORTHO05D003665 5.2e-06 55.5 131 30.5
Ca_20732_v3 Cicer arietinum L. HOM05D003301 ORTHO05D003665 6.7e-06 55.1 124 27.4
MD15G1194500 Malus domestica HOM05D003301 ORTHO05D003665 8.8e-06 54.7 109 29.4


User provided reference genes

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