Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_31138 Sequoiadendron giganteum HOM05D001711 ORTHO05D002847 2.4e-102 375.6 195 100.0
Manes.09G079619 Manihot esculenta HOM05D001711 ORTHO05D002847 6.9e-09 65.1 154 33.8
Duzib133G1073 Durio zibethinus HOM05D001711 ORTHO05D002847 9.0e-09 64.7 91 46.2
Sabra06G0005100 Salix brachista HOM05D001711 ORTHO05D002847 1.5e-08 63.9 91 40.7
Haze_13646 Corylus avellana HOM05D001711 ORTHO05D002847 2.0e-08 63.5 85 44.7
HanXRQChr15g0469911 Helianthus annuus HOM05D001711 ORTHO05D002211 2.0e-08 63.5 124 41.9
Os06g0666400 Oryza sativa ssp. japonica HOM05D001711 ORTHO05D002847 2.0e-08 63.5 66 53.0
CiPaw.04G072500 Carya illinoinensis HOM05D001711 ORTHO05D002847 2.6e-08 63.2 102 41.2
Potri.006G006300 Populus trichocarpa HOM05D001711 ORTHO05D002847 2.6e-08 63.2 92 42.4
Thecc.01G173400 Theobroma cacao HOM05D001711 ORTHO05D002847 2.6e-08 63.2 85 45.9
TPR.G8276 Trifolium pratense HOM05D001711 ORTHO05D002847 2.6e-08 63.2 55 60.0
SEGI_09893 Sequoiadendron giganteum HOM05D001711 ORTHO05D002211 3.4e-08 62.8 182 32.4
CiPaw.03G111200 Carya illinoinensis HOM05D001711 ORTHO05D002847 5.8e-08 62.0 88 44.3
Psat5g106560 Pisum sativum HOM05D001711 ORTHO05D002847 5.8e-08 62.0 55 58.2
Atru.chr8.1002 Acer truncatum HOM05D003807 ORTHO05D002847 7.6e-08 61.6 83 45.8
BcaC03g18312 Brassica carinata HOM05D001711 ORTHO05D002211 7.6e-08 61.6 96 44.8
Cfa022497 Carpinus fangiana HOM05D001711 ORTHO05D002847 7.6e-08 61.6 88 40.9
FvH4_6g39500 Fragaria vesca HOM05D003807 ORTHO05D002847 7.6e-08 61.6 68 51.5
FAN02G4313 Fragaria x ananassa HOM05D003807 ORTHO05D002847 7.6e-08 61.6 68 51.5
FAN05G3549 Fragaria x ananassa HOM05D003807 ORTHO05D002847 7.6e-08 61.6 68 51.5
FAN09G4092 Fragaria x ananassa HOM05D003807 ORTHO05D002847 7.6e-08 61.6 68 51.5
FAN14G1837 Fragaria x ananassa HOM05D003807 ORTHO05D002847 7.6e-08 61.6 68 51.5
Medtr3g081500 Medicago truncatula HOM05D001711 ORTHO05D002847 7.6e-08 61.6 55 58.2
Phvul.006G002700 Phaseolus vulgaris HOM05D001711 ORTHO05D002847 7.6e-08 61.6 71 52.1
BcaC03g18311 Brassica carinata HOM05D001711 ORTHO05D002211 1.0e-07 61.2 79 49.4
C02p63870 Brassica napus HOM05D001711 ORTHO05D002211 1.0e-07 61.2 79 49.4
BolC2t12455H Brassica oleracea HOM05D001711 ORTHO05D002211 1.0e-07 61.2 79 49.4
Ca_16315_v3 Cicer arietinum L. HOM05D001711 ORTHO05D002847 1.0e-07 61.2 74 47.3
Glyma.14G002800 Glycine max HOM05D001711 ORTHO05D002847 1.0e-07 61.2 101 39.6
Manes.08G068801 Manihot esculenta HOM05D001711 ORTHO05D002847 1.0e-07 61.2 70 47.1
Potri.016G017900 Populus trichocarpa HOM05D001711 ORTHO05D002847 1.0e-07 61.2 70 48.6
Glyma.20G064500 Glycine max HOM05D001711 ORTHO05D002847 1.3e-07 60.8 75 45.3
SEGI_20878 Sequoiadendron giganteum HOM05D001711 ORTHO05D002211 1.3e-07 60.8 86 46.5
TAR626G1107 Trochodendron aralioides HOM05D001711 ORTHO05D002847 1.3e-07 60.8 82 46.3
A02p43730 Brassica napus HOM05D001711 ORTHO05D002211 1.7e-07 60.5 61 54.1
BraA02t09297Z Brassica rapa HOM05D001711 ORTHO05D002211 1.7e-07 60.5 61 54.1
CANSAT64G0062 Cannabis sativa HOM05D001711 ORTHO05D002847 1.7e-07 60.5 52 61.5
AUR62003537 Chenopodium quinoa HOM05D001711 ORTHO05D002847 1.7e-07 60.5 46 67.4
Gorai.001G093400 Gossypium raimondii HOM05D003807 ORTHO05D002847 1.7e-07 60.5 89 44.9
Cpa.g.sc8.284 Carica papaya HOM05D001711 ORTHO05D002847 2.2e-07 60.1 81 46.9
Gohir.D07G087400 Gossypium hirsutum HOM05D003807 ORTHO05D002847 2.2e-07 60.1 97 42.3
TWI60G0522 Tripterygium wilfordii HOM05D001711 ORTHO05D002847 2.2e-07 60.1 77 44.2
CAN.G182.24 Capsicum annuum HOM05D001711 ORTHO05D002847 2.9e-07 59.7 86 44.2
CDE04G2176 Ceratophyllum demersum HOM05D001711 ORTHO05D002211 2.9e-07 59.7 73 49.3
Duzib211G0113 Durio zibethinus HOM05D001711 ORTHO05D002847 2.9e-07 59.7 86 48.8
Lj6g0002202 Lotus japonicus HOM05D001711 ORTHO05D002847 2.9e-07 59.7 52 55.8
SEGI_14022 Sequoiadendron giganteum HOM05D001711 ORTHO05D002211 2.9e-07 59.7 147 35.4
Sopen07g022830 Solanum pennellii HOM05D003807 ORTHO05D002847 2.9e-07 59.7 128 37.5
VMungo0540G2275 Vigna mungo HOM05D001711 ORTHO05D002847 2.9e-07 59.7 66 56.1
PGSC0003DMG400011745 Solanum tuberosum HOM05D003807 ORTHO05D002847 3.8e-07 59.3 126 38.1
Aa31LG8G8720 Aethionema arabicum HOM05D003807 ORTHO05D002847 4.9e-07 58.9 110 40.0
AL7G11920 Arabidopsis lyrata HOM05D001711 ORTHO05D002211 4.9e-07 58.9 63 54.0
DCAR_001486 Daucus carota HOM05D001711 ORTHO05D002211 4.9e-07 58.9 122 35.2
Oeu003076.1 Olea europaea HOM05D001711 ORTHO05D002847 4.9e-07 58.9 49 63.3
PGR031G0807 Punica granatum HOM05D003807 ORTHO05D002847 4.9e-07 58.9 65 52.3
Ah.02g120820 Amaranthus hybridus HOM05D001711 ORTHO05D002847 6.5e-07 58.5 82 46.3
DCAR_013031 Daucus carota HOM05D001711 ORTHO05D002847 6.5e-07 58.5 79 45.6
Gohir.A07G083901 Gossypium hirsutum HOM05D003807 ORTHO05D002847 6.5e-07 58.5 80 47.5
Gohir.D11G162700 Gossypium hirsutum HOM05D001711 ORTHO05D002847 6.5e-07 58.5 72 45.8
Gorai.007G173300 Gossypium raimondii HOM05D001711 ORTHO05D002847 6.5e-07 58.5 72 45.8
Nn7g38292 Nelumbo nucifera HOM05D001711 ORTHO05D002847 6.5e-07 58.5 69 46.4
Sed0006784 Sechium edule HOM05D003807 ORTHO05D002847 6.5e-07 58.5 62 53.2
Solyc07g043250.1 Solanum lycopersicum HOM05D003807 ORTHO05D002847 6.5e-07 58.5 128 37.5
arahy.Tifrunner.gnm1.ann1.W19YV6 Arachis hypogaea HOM05D001711 ORTHO05D002847 8.4e-07 58.2 92 41.3
CARHR098040 Cardamine hirsuta HOM05D003807 ORTHO05D002847 8.4e-07 58.2 44 65.9
Eucgr.K01342 Eucalyptus grandis HOM05D001711 ORTHO05D002847 8.4e-07 58.2 67 47.8
Lalb_Chr04g0247001 Lupinus albus HOM05D003807 ORTHO05D002847 8.4e-07 58.2 49 59.2
Lalb_Chr10g0093681 Lupinus albus HOM05D001711 ORTHO05D002847 8.4e-07 58.2 61 49.2
Prupe.3G185800 Prunus persica HOM05D003807 ORTHO05D002847 8.4e-07 58.2 75 48.0
RcHm_v2.0_Chr2g0153531 Rosa chinensis HOM05D003807 ORTHO05D002847 8.4e-07 58.2 72 47.2
BcaB04g20540 Brassica carinata HOM05D003807 ORTHO05D002847 1.1e-06 57.8 60 56.7
AUR62027736 Chenopodium quinoa HOM05D001711 ORTHO05D002211 1.1e-06 57.8 52 55.8
Ciclev10012635m.g Citrus clementina HOM05D001711 ORTHO05D002847 1.1e-06 57.8 89 42.7
Thhalv10021568m.g Eutrema salsugineum HOM05D003807 ORTHO05D002847 1.1e-06 57.8 138 32.6
Nitab4.5_0000170g0400 Nicotiana tabacum HOM05D003807 ORTHO05D002847 1.1e-06 57.8 95 43.2
TAR627G0259 Trochodendron aralioides HOM05D003807 ORTHO05D002847 1.1e-06 57.8 105 36.2
Zm00001eb233250 Zea mays HOM05D001711 ORTHO05D002847 1.1e-06 57.8 40 67.5
ClCG07G010990 Citrullus lanatus HOM05D001711 ORTHO05D002847 1.4e-06 57.4 67 47.8
Nitab4.5_0002232g0070 Nicotiana tabacum HOM05D003807 ORTHO05D002847 1.4e-06 57.4 56 58.9
QL11p039996 Quercus lobata HOM05D001711 ORTHO05D002847 1.4e-06 57.4 74 44.6
BcaNung00894 Brassica carinata HOM05D001711 ORTHO05D002211 1.9e-06 57.0 72 47.2
C01p00750 Brassica napus HOM05D001711 ORTHO05D002211 1.9e-06 57.0 72 47.2
BolC1t00077H Brassica oleracea HOM05D001711 ORTHO05D002211 1.9e-06 57.0 72 47.2
BraA06t26132Z Brassica rapa HOM05D001711 ORTHO05D002211 1.9e-06 57.0 102 37.3
Sp7g13350 Schrenkiella parvula HOM05D003807 ORTHO05D002847 1.9e-06 57.0 98 38.8
TAR624G1275 Trochodendron aralioides HOM05D001711 ORTHO05D002847 1.9e-06 57.0 96 39.6
Aa31LG9G2270 Aethionema arabicum HOM05D003807 ORTHO05D002847 2.5e-06 56.6 49 61.2
AT4G39720 Arabidopsis thaliana HOM05D001711 ORTHO05D002211 2.5e-06 56.6 62 54.8
A01p22390 Brassica napus HOM05D003807 ORTHO05D002847 2.5e-06 56.6 73 46.6
CsaV3_4G007280 Cucumis sativus L. HOM05D001711 ORTHO05D002847 2.5e-06 56.6 61 54.1
Glyma.14G172200 Glycine max HOM05D001711 ORTHO05D002211 2.5e-06 56.6 44 61.4
Nitab4.5_0000073g0510 Nicotiana tabacum HOM05D001711 ORTHO05D002847 2.5e-06 56.6 134 36.6
Os08g0409500 Oryza sativa ssp. japonica HOM05D001711 ORTHO05D002211 2.5e-06 56.6 44 68.2
AL3G36350 Arabidopsis lyrata HOM05D003807 ORTHO05D002847 3.2e-06 56.2 44 63.6
AT3G22160 Arabidopsis thaliana HOM05D003807 ORTHO05D002847 3.2e-06 56.2 44 63.6
AT4G15120 Arabidopsis thaliana HOM05D003807 ORTHO05D002847 3.2e-06 56.2 66 51.5
A01p00610 Brassica napus HOM05D001711 ORTHO05D002211 3.2e-06 56.2 72 47.2
BraA01t00069Z Brassica rapa HOM05D001711 ORTHO05D002211 3.2e-06 56.2 72 47.2
Carub.0003s2233 Capsella rubella HOM05D003807 ORTHO05D002847 3.2e-06 56.2 44 63.6
CAN.G1423.3 Capsicum annuum HOM05D001711 ORTHO05D002211 3.2e-06 56.2 91 40.7
CAN.G71.17 Capsicum annuum HOM05D001711 ORTHO05D002211 3.2e-06 56.2 91 40.7
CDE12G0360 Ceratophyllum demersum HOM05D001711 ORTHO05D002211 3.2e-06 56.2 62 50.0
AUR62017851 Chenopodium quinoa HOM05D001711 ORTHO05D002847 3.2e-06 56.2 77 44.2
Cc00_g16190 Coffea canephora HOM05D001711 ORTHO05D002211 3.2e-06 56.2 52 57.7
Glyma.13G005100 Glycine max HOM05D001711 ORTHO05D002847 3.2e-06 56.2 50 58.0
LjContig00081g0007494 Lotus japonicus HOM05D001711 ORTHO05D002847 3.2e-06 56.2 66 48.5
Nitab4.5_0002570g0040 Nicotiana tabacum HOM05D001711 ORTHO05D002847 3.2e-06 56.2 123 35.0
unitig_0.g1887 Utricularia gibba HOM05D001711 ORTHO05D002211 3.2e-06 56.2 63 54.0
Zm00001eb098700 Zea mays HOM05D001711 ORTHO05D002211 3.2e-06 56.2 55 54.5
BcaC05g28098 Brassica carinata HOM05D003807 ORTHO05D002847 4.2e-06 55.8 62 53.2
C05p41250 Brassica napus HOM05D003807 ORTHO05D002847 4.2e-06 55.8 62 53.2
BolC5t32867H Brassica oleracea HOM05D003807 ORTHO05D002847 4.2e-06 55.8 62 53.2
BraA01t03420Z Brassica rapa HOM05D003807 ORTHO05D002847 4.2e-06 55.8 60 55.0
BraA05t21543Z Brassica rapa HOM05D003807 ORTHO05D002847 4.2e-06 55.8 64 53.1
CARHR279090 Cardamine hirsuta HOM05D001711 ORTHO05D002211 4.2e-06 55.8 47 63.8
AUR62003785 Chenopodium quinoa HOM05D001711 ORTHO05D002211 4.2e-06 55.8 65 50.8
ClCG11G016820 Citrullus lanatus HOM05D003807 ORTHO05D002847 4.2e-06 55.8 89 41.6
MELO3C016231.2 Cucumis melo HOM05D001711 ORTHO05D002847 4.2e-06 55.8 67 46.3
CsaV3_6G045520 Cucumis sativus L. HOM05D001711 ORTHO05D002211 4.2e-06 55.8 59 54.2
Gohir.A11G155800 Gossypium hirsutum HOM05D001711 ORTHO05D002847 4.2e-06 55.8 100 42.0
Phvul.008G172700 Phaseolus vulgaris HOM05D001711 ORTHO05D002211 4.2e-06 55.8 37 70.3
Phvul.008G290700 Phaseolus vulgaris HOM05D003807 ORTHO05D002847 4.2e-06 55.8 85 40.0
THA.LOC104807867 Tarenaya hassleriana HOM05D001711 ORTHO05D002211 4.2e-06 55.8 48 62.5
THA.LOC104822519 Tarenaya hassleriana HOM05D003807 ORTHO05D002847 4.2e-06 55.8 71 50.7
TAR628G0933 Trochodendron aralioides HOM05D001711 ORTHO05D002211 4.2e-06 55.8 55 54.5
VMungo0647G0712 Vigna mungo HOM05D001711 ORTHO05D002211 4.2e-06 55.8 37 70.3
VMungo0647G1411 Vigna mungo HOM05D001711 ORTHO05D002847 4.2e-06 55.8 106 35.8
Zm00001eb389870 Zea mays HOM05D001711 ORTHO05D002847 4.2e-06 55.8 70 47.1
BcaNung05774 Brassica carinata HOM05D001711 ORTHO05D002211 5.5e-06 55.5 64 51.6
A09p08940 Brassica napus HOM05D001711 ORTHO05D002211 5.5e-06 55.5 162 29.6
Carub.0007s0160 Capsella rubella HOM05D001711 ORTHO05D002211 5.5e-06 55.5 64 51.6
CiPaw.07G181000 Carya illinoinensis HOM05D001711 ORTHO05D002211 5.5e-06 55.5 124 34.7
ECA240G2605 Erigeron canadensis HOM05D003807 ORTHO05D002847 5.5e-06 55.5 38 65.8
Migut.L00113 Erythranthe guttata HOM05D001711 ORTHO05D002211 5.5e-06 55.5 51 54.9
Gorai.007G240000 Gossypium raimondii HOM05D001711 ORTHO05D002211 5.5e-06 55.5 47 59.6
Hma1.2p1_0120F.1_g057310 Hydrangea macrophylla HOM05D001711 ORTHO05D002211 5.5e-06 55.5 47 61.7
Nn1g05328 Nelumbo nucifera HOM05D001711 ORTHO05D002211 5.5e-06 55.5 34 76.5
Os09g0370500 Oryza sativa ssp. japonica HOM05D001711 ORTHO05D002211 5.5e-06 55.5 34 76.5
TAR376G0352 Trochodendron aralioides HOM05D001711 ORTHO05D002211 5.5e-06 55.5 34 76.5
TAR381G0805 Trochodendron aralioides HOM05D001711 ORTHO05D002211 5.5e-06 55.5 39 74.4
Atru.chr13.1210 Acer truncatum HOM05D001711 ORTHO05D002211 7.1e-06 55.1 36 72.2
MSTRG.6598 Avicennia marina HOM05D003807 ORTHO05D002847 7.1e-06 55.1 62 50.0
A06p32020 Brassica napus HOM05D001711 ORTHO05D002211 7.1e-06 55.1 70 42.9
C03p78140 Brassica napus HOM05D001711 ORTHO05D002211 7.1e-06 55.1 79 46.8
BolC3t18351H Brassica oleracea HOM05D001711 ORTHO05D002211 7.1e-06 55.1 178 31.5
BolC3t20077H Brassica oleracea HOM05D001711 ORTHO05D002211 7.1e-06 55.1 79 46.8
CARHR034600 Cardamine hirsuta HOM05D001711 ORTHO05D002211 7.1e-06 55.1 35 74.3
Dinv13025 Davidia involucrata HOM05D001711 ORTHO05D002211 7.1e-06 55.1 37 70.3
Thhalv10025887m.g Eutrema salsugineum HOM05D001711 ORTHO05D002211 7.1e-06 55.1 62 53.2
MBI02_g08736_MAGBIO Magnolia biondii HOM05D001711 ORTHO05D002211 7.1e-06 55.1 51 54.9
Manes.02G153400 Manihot esculenta HOM05D001711 ORTHO05D002211 7.1e-06 55.1 46 58.7
Os02g0173200 Oryza sativa ssp. japonica HOM05D001711 ORTHO05D002847 7.1e-06 55.1 40 65.0
Peaxi162Scf00047g00243 Petunia axillaris HOM05D003807 ORTHO05D002847 7.1e-06 55.1 122 35.2
QL11p040755 Quercus lobata HOM05D001711 ORTHO05D002847 7.1e-06 55.1 74 43.2
Sp3g19970 Schrenkiella parvula HOM05D003807 ORTHO05D002847 7.1e-06 55.1 110 37.3
Ah.05g170160 Amaranthus hybridus HOM05D001711 ORTHO05D002211 9.3e-06 54.7 35 74.3
MSTRG.12273 Avicennia marina HOM05D003807 ORTHO05D002847 9.3e-06 54.7 66 43.9
BcaC01g02753 Brassica carinata HOM05D001711 ORTHO05D002211 9.3e-06 54.7 178 30.9
BcaC09g49150 Brassica carinata HOM05D003807 ORTHO05D002847 9.3e-06 54.7 110 36.4
A01p33000 Brassica napus HOM05D003807 ORTHO05D002847 9.3e-06 54.7 110 36.4
C01p42110 Brassica napus HOM05D003807 ORTHO05D002847 9.3e-06 54.7 110 36.4
C03p60910 Brassica napus HOM05D001711 ORTHO05D002211 9.3e-06 54.7 178 30.9
BolC1t04173H Brassica oleracea HOM05D003807 ORTHO05D002847 9.3e-06 54.7 110 36.4
Dinv08378 Davidia involucrata HOM05D001711 ORTHO05D002847 9.3e-06 54.7 45 55.6
Thhalv10004427m.g Eutrema salsugineum HOM05D001711 ORTHO05D002211 9.3e-06 54.7 73 52.1
Glyma.04G103300 Glycine max HOM05D001711 ORTHO05D002211 9.3e-06 54.7 95 37.9
Lsat_1_v5_gn_5_67041 Lactuca sativa HOM05D044999 ORTHO05D002847 9.3e-06 54.7 72 40.3
Nitab4.5_0005431g0010 Nicotiana tabacum HOM05D001711 ORTHO05D002211 9.3e-06 54.7 99 38.4
Peaxi162Scf00805g00053 Petunia axillaris HOM05D001711 ORTHO05D002211 9.3e-06 54.7 60 55.0
Psat2g073160 Pisum sativum HOM05D001711 ORTHO05D002211 9.3e-06 54.7 36 69.4
Rhsim12G0015000 Rhododendron simsii HOM05D001711 ORTHO05D002847 9.3e-06 54.7 61 50.8
Sp1g30500 Schrenkiella parvula HOM05D001711 ORTHO05D002211 9.3e-06 54.7 35 74.3
SGA_v2.0_scaffold73G24425 Striga asiatica HOM05D003807 ORTHO05D002847 9.3e-06 54.7 40 62.5
TWI32G0059 Tripterygium wilfordii HOM05D003807 ORTHO05D002847 9.3e-06 54.7 51 56.9
unitig_32.g10696 Utricularia gibba HOM05D001711 ORTHO05D002211 9.3e-06 54.7 40 70.0
unitig_747.g21757 Utricularia gibba HOM05D001711 ORTHO05D002211 9.3e-06 54.7 63 50.8
VMungo1309G0567 Vigna mungo HOM05D001711 ORTHO05D002211 9.3e-06 54.7 58 51.7
Zm00001eb084880 Zea mays HOM05D001711 ORTHO05D002211 9.3e-06 54.7 56 50.0
Zm00001eb178900 Zea mays HOM05D001711 ORTHO05D002211 9.3e-06 54.7 50 58.0


User provided reference genes

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