Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_31034 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 7.2e-178 627.1 308 100.0
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 4.2e-69 265.8 154 78.6
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 5.5e-69 265.4 154 78.6
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 2.1e-68 263.5 154 77.9
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 2.1e-68 263.5 154 77.9
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 2.7e-68 263.1 154 79.2
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 7.9e-68 261.5 151 81.5
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 1.4e-67 260.8 154 79.2
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 1.4e-67 260.8 154 77.9
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 1.8e-67 260.4 151 79.5
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 1.8e-67 260.4 154 78.6
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 1.8e-67 260.4 154 79.2
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 2.3e-67 260.0 154 76.0
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 2.3e-67 260.0 151 78.8
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 2.3e-67 260.0 151 78.1
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 3.0e-67 259.6 151 77.5
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 3.9e-67 259.2 151 76.8
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 5.1e-67 258.8 155 77.4
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 8.8e-67 258.1 154 76.6
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 1.1e-66 257.7 154 76.0
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 1.1e-66 257.7 150 80.0
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 1.5e-66 257.3 154 77.9
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 2.6e-66 256.5 154 78.6
SEGI_29356 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 2.6e-66 256.5 151 78.8
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 2.6e-66 256.5 154 75.3
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 3.3e-66 256.1 154 76.0
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 3.3e-66 256.1 154 77.3
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 5.7e-66 255.4 154 77.9
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 5.7e-66 255.4 154 77.9
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 5.7e-66 255.4 154 76.0
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 5.7e-66 255.4 154 77.9
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 7.4e-66 255.0 155 77.4
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 7.4e-66 255.0 154 76.0
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 2.2e-65 253.4 154 75.3
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 2.2e-65 253.4 154 74.7
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 2.8e-65 253.1 154 74.7
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 3.7e-65 252.7 154 74.7
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 3.7e-65 252.7 154 75.3
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 4.8e-65 252.3 154 76.0
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 4.8e-65 252.3 154 76.0
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 4.8e-65 252.3 154 75.3
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 6.3e-65 251.9 154 74.0
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 6.3e-65 251.9 154 74.7
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 8.2e-65 251.5 151 76.2
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 8.2e-65 251.5 154 77.3
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 8.2e-65 251.5 154 74.7
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.4e-64 250.8 154 73.4
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 1.4e-64 250.8 151 76.2
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 1.4e-64 250.8 154 74.7
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 1.4e-64 250.8 154 71.4
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 1.8e-64 250.4 154 76.0
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 2.4e-64 250.0 154 73.4
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 3.1e-64 249.6 154 75.3
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 3.1e-64 249.6 150 76.7
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 5.3e-64 248.8 154 74.0
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 5.3e-64 248.8 154 73.4
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 9.1e-64 248.1 150 75.3
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 9.1e-64 248.1 154 73.4
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 1.5e-63 247.3 154 73.4
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 2.0e-63 246.9 154 76.0
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 2.0e-63 246.9 154 76.0
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 2.0e-63 246.9 186 65.6
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 2.6e-63 246.5 152 76.3
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 3.5e-63 246.1 154 72.1
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 7.7e-63 245.0 154 72.1
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 7.7e-63 245.0 154 73.4
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 7.7e-63 245.0 154 72.1
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 2.2e-62 243.4 154 74.0
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 5.0e-62 242.3 151 73.5
TPR.G35100 Trifolium pratense HOM05D003744 ORTHO05D004327 6.5e-62 241.9 139 77.7
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 1.1e-61 241.1 154 72.1
arahy.Tifrunner.gnm1.ann1.1L5CCL Arachis hypogaea HOM05D003744 ORTHO05D004327 1.4e-61 240.7 150 74.7
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 2.5e-61 240.0 155 74.8
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 3.2e-61 239.6 154 69.5
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 3.2e-61 239.6 154 71.4
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 4.2e-61 239.2 154 71.4
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 4.2e-61 239.2 154 71.4
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 4.2e-61 239.2 154 69.5
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 1.2e-60 237.7 150 74.7
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 2.1e-60 236.9 154 70.8
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 2.7e-60 236.5 154 70.8
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 2.7e-60 236.5 150 69.3
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 3.6e-60 236.1 154 70.8
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 4.7e-60 235.7 154 70.1
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 8.0e-60 235.0 154 69.5
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 8.0e-60 235.0 154 69.5
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 8.0e-60 235.0 154 70.1
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 1.0e-59 234.6 161 68.3
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 1.0e-59 234.6 161 68.3
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 1.0e-59 234.6 154 70.1
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 5.2e-59 232.3 185 62.2
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 6.7e-59 231.9 154 69.5
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 1.1e-58 231.1 154 66.9
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 1.5e-58 230.7 169 65.7
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 5.7e-58 228.8 170 64.7
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 7.4e-58 228.4 149 69.8
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 9.7e-58 228.0 139 75.5
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 1.7e-57 227.3 150 67.3
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 2.8e-57 226.5 138 69.6
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 3.7e-57 226.1 154 73.4
Os08g0389300 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 1.4e-56 224.2 151 64.9
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 1.8e-56 223.8 163 64.4
Eucgr.H03234 Eucalyptus grandis HOM05D003744 ORTHO05D004327 2.4e-56 223.4 135 72.6
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 1.6e-55 220.7 170 62.4
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 1.7e-54 217.2 151 69.5
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 2.9e-54 216.5 128 78.1
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 3.8e-54 216.1 150 64.7
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 2.5e-53 213.4 132 73.5
CBR_g5669 Chara braunii HOM05D003744 ORTHO05D004327 3.2e-53 213.0 191 58.6
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 4.2e-53 212.6 133 72.9
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 5.5e-53 212.2 154 68.2
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 7.2e-53 211.8 166 61.4
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 2.1e-52 210.3 156 59.0
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 6.1e-52 208.8 121 81.0
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 6.7e-51 205.3 122 77.0
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 6.7e-51 205.3 122 77.0
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 6.7e-51 205.3 122 77.0
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 6.7e-51 205.3 150 62.7
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 8.8e-51 204.9 122 80.3
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.6e-50 203.4 150 62.0
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 2.6e-50 203.4 128 73.4
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 2.6e-50 203.4 121 77.7
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 7.5e-50 201.8 150 61.3
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 7.5e-50 201.8 150 61.3
Cc00_g30150 Coffea canephora HOM05D003744 ORTHO05D004327 1.7e-49 200.7 151 61.6
SEGI_19125 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 2.2e-49 200.3 122 75.4
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 1.4e-48 197.6 154 61.0
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 1.0e-46 191.4 142 62.0
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 8.5e-46 188.3 154 57.1
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 1.9e-45 187.2 110 76.4
Lj1g0011441 Lotus japonicus HOM05D003744 ORTHO05D004327 9.4e-45 184.9 114 73.7
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 4.7e-44 182.6 98 86.7
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 3.1e-40 169.9 161 52.2
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 4.1e-40 169.5 127 63.0
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 5.4e-40 169.1 103 71.8
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 3.5e-39 166.4 109 69.7
HPP92_014779 Vanilla planifolia HOM05D003744 ORTHO05D004327 4.2e-37 159.5 158 50.0
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 5.4e-32 142.5 154 48.7
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 1.2e-31 141.4 76 85.5
Cc04_g15800 Coffea canephora HOM05D003744 ORTHO05D004327 3.5e-31 139.8 151 46.4
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.0e-30 138.3 154 47.4
Haze_26705 Corylus avellana HOM05D003744 ORTHO05D004327 1.0e-30 138.3 159 40.3
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 1.3e-30 137.9 87 71.3
PRCOL_00006084 Prasinoderma coloniale HOM05D003744 ORTHO05D004327 3.3e-29 133.3 130 53.1
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 1.2e-28 131.3 154 49.4
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 1.2e-26 124.8 84 65.5
MD16G1001300 Malus domestica HOM05D003744 ORTHO05D004327 4.9e-25 119.4 128 53.9
Lalb_Chr12g0204281 Lupinus albus HOM05D003744 ORTHO05D004327 1.6e-23 114.4 94 62.8
TAR374G0013 Trochodendron aralioides HOM05D003744 ORTHO05D004327 3.5e-23 113.2 104 51.9
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 5.6e-21 105.9 62 75.8
Cfa021958 Carpinus fangiana HOM05D003744 ORTHO05D004327 7.3e-21 105.5 153 45.1
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 9.5e-21 105.1 154 40.3
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 7.3e-13 79.0 52 71.2
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 9.5e-13 78.6 56 66.1
Cc04_g13900 Coffea canephora HOM05D003744 ORTHO05D004327 8.1e-12 75.5 55 65.5
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.8e-11 74.3 39 84.6
SEGI_06826 Sequoiadendron giganteum HOM05D005695 ORTHO05D007810 1.2e-10 71.6 44 84.1
vmacro10898 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 9.9e-10 68.6 45 68.9
SEGI_22569 Sequoiadendron giganteum HOM05D022280 ORTHO05D019365 7.8e-07 58.9 30 93.3


User provided reference genes

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