Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_30950 Sequoiadendron giganteum HOM05D023998 ORTHO05D005353 2.1e-294 1015.0 523 100.0
SEGI_29916 Sequoiadendron giganteum HOM05D023998 ORTHO05D005353 4.3e-114 416.0 324 69.8
SEGI_17798 Sequoiadendron giganteum HOM05D023998 ORTHO05D383864 5.7e-50 203.0 148 75.0
SEGI_05919 Sequoiadendron giganteum HOM05D004490 ORTHO05D005353 1.3e-38 165.2 96 84.4
SEGI_27626 Sequoiadendron giganteum HOM05D000250 ORTHO05D385069 1.2e-36 158.7 140 63.6
SEGI_14220 Sequoiadendron giganteum HOM05D000018 ORTHO05D002863 7.7e-23 112.8 136 55.1
SEGI_19348 Sequoiadendron giganteum HOM05D002708 ORTHO05D037597 1.1e-21 109.0 87 69.0
SEGI_16466 Sequoiadendron giganteum HOM05D002708 ORTHO05D037597 2.5e-21 107.8 72 75.0
Gorai.013G140400 Gossypium raimondii HOM05D004490 ORTHO05D005353 6.1e-20 103.2 117 51.3
Duzib177G0006 Durio zibethinus HOM05D004490 ORTHO05D005353 1.0e-19 102.4 120 50.0
Gohir.A13G121400 Gossypium hirsutum HOM05D004490 ORTHO05D005353 1.4e-19 102.1 80 65.0
Gohir.D13G125400 Gossypium hirsutum HOM05D004490 ORTHO05D005353 1.4e-19 102.1 80 65.0
QL02p033840 Quercus lobata HOM05D004490 ORTHO05D005353 1.4e-19 102.1 80 65.0
Manes.02G191800 Manihot esculenta HOM05D004490 ORTHO05D005353 3.0e-19 100.9 122 47.5
GSVIVG01034483001 Vitis vinifera HOM05D004490 ORTHO05D005353 4.0e-19 100.5 140 42.9
CiPaw.16G061300 Carya illinoinensis HOM05D004490 ORTHO05D005353 8.9e-19 99.4 140 42.1
PGR102G0893 Punica granatum HOM05D004490 ORTHO05D005353 1.5e-18 98.6 82 59.8
SGA_v2.0_scaffold118G32473 Striga asiatica HOM05D004490 ORTHO05D005353 2.6e-18 97.8 81 64.2
Oeu021013.3 Olea europaea HOM05D004490 ORTHO05D005353 4.4e-18 97.1 116 49.1
MSTRG.1522 Avicennia marina HOM05D004490 ORTHO05D005353 1.3e-17 95.5 81 63.0
Cc10_g11460 Coffea canephora HOM05D004490 ORTHO05D005353 2.8e-17 94.4 116 49.1
Haze_17934 Corylus avellana HOM05D004490 ORTHO05D005353 2.8e-17 94.4 80 60.0
ClCG09G010540 Citrullus lanatus HOM05D004490 ORTHO05D005353 3.7e-17 94.0 82 58.5
Mapoly0003s0077 Marchantia polymorpha HOM05D004490 ORTHO05D005353 3.7e-17 94.0 106 51.9
Actinidia29417 Actinidia chinensis HOM05D004490 ORTHO05D005353 4.9e-17 93.6 73 64.4
Hma1.2p1_0363F.1_g136660 Hydrangea macrophylla HOM05D004490 ORTHO05D005353 4.9e-17 93.6 98 51.0
SEGI_36798 Sequoiadendron giganteum HOM05D000466 ORTHO05D000331 4.9e-17 93.6 87 58.6
EL10Ac1g00080 Beta vulgaris HOM05D004490 ORTHO05D005353 1.1e-16 92.4 118 45.8
Cfa018184 Carpinus fangiana HOM05D004490 ORTHO05D005353 1.1e-16 92.4 80 58.8
Hma1.2p1_0363F.1_g136650 Hydrangea macrophylla HOM05D004490 ORTHO05D005353 1.1e-16 92.4 80 56.2
TWI63G0531 Tripterygium wilfordii HOM05D004490 ORTHO05D005353 1.4e-16 92.0 82 58.5
CDE08G1471 Ceratophyllum demersum HOM05D004490 ORTHO05D005353 1.8e-16 91.7 80 56.2
Hund27085 Selenicereus undatus HOM05D004490 ORTHO05D005353 2.4e-16 91.3 124 45.2
TAR208G0002 Trochodendron aralioides HOM05D004490 ORTHO05D005353 2.4e-16 91.3 128 42.2
Medtr1g096410 Medicago truncatula HOM05D004490 ORTHO05D005353 3.2e-16 90.9 123 46.3
Nn5g27710 Nelumbo nucifera HOM05D004490 ORTHO05D005353 3.2e-16 90.9 71 62.0
Thecc.08G183200 Theobroma cacao HOM05D004490 ORTHO05D005353 3.2e-16 90.9 80 61.2
Ca_10614_v3 Cicer arietinum L. HOM05D004490 ORTHO05D005353 4.1e-16 90.5 125 44.8
VMungo0720G0360 Vigna mungo HOM05D004490 ORTHO05D005353 4.1e-16 90.5 82 57.3
MELO3C024104.2 Cucumis melo HOM05D004490 ORTHO05D005353 5.4e-16 90.1 82 57.3
Glyma.10G216200 Glycine max HOM05D004490 ORTHO05D005353 5.4e-16 90.1 123 44.7
Lalb_Chr21g0305821 Lupinus albus HOM05D004490 ORTHO05D005353 5.4e-16 90.1 125 44.8
vmacro11670 Vaccinium macrocarpon HOM05D004490 ORTHO05D005353 5.4e-16 90.1 73 61.6
arahy.Tifrunner.gnm1.ann1.90XUFN Arachis hypogaea HOM05D004490 ORTHO05D005353 7.0e-16 89.7 99 52.5
Pp3c14_7350 Physcomitrium patens HOM05D004490 ORTHO05D005353 7.0e-16 89.7 100 56.0
SalBow4G3000 Salvia bowleyana HOM05D004490 ORTHO05D005353 7.0e-16 89.7 82 59.8
SalBow7G0993 Salvia bowleyana HOM05D004490 ORTHO05D005353 7.0e-16 89.7 82 59.8
Ah.05g178090 Amaranthus hybridus HOM05D004490 ORTHO05D005353 9.2e-16 89.4 118 45.8
arahy.Tifrunner.gnm1.ann1.2Y7GNB Arachis hypogaea HOM05D004490 ORTHO05D005353 9.2e-16 89.4 99 52.5
CsaV3_7G024020 Cucumis sativus L. HOM05D004490 ORTHO05D005353 9.2e-16 89.4 82 56.1
Dinv41710 Davidia involucrata HOM05D004490 ORTHO05D005353 9.2e-16 89.4 73 60.3
Glyma.20G175700 Glycine max HOM05D004490 ORTHO05D005353 9.2e-16 89.4 81 56.8
MD04G1003500 Malus domestica HOM05D004490 ORTHO05D005353 9.2e-16 89.4 81 60.5
Prupe.8G058000 Prunus persica HOM05D004490 ORTHO05D005353 9.2e-16 89.4 102 50.0
CSS0029963 Camellia sinensis var. sinensis HOM05D004490 ORTHO05D005353 1.2e-15 89.0 74 60.8
Atru.chr12.1269 Acer truncatum HOM05D004490 ORTHO05D005353 1.6e-15 88.6 82 59.8
ATR1098G081 Amborella trichopoda HOM05D004490 ORTHO05D008312 1.6e-15 88.6 97 49.5
DCAR_014360 Daucus carota HOM05D004490 ORTHO05D005353 1.6e-15 88.6 81 55.6
Phvul.007G089700 Phaseolus vulgaris HOM05D004490 ORTHO05D005353 1.6e-15 88.6 82 54.9
Potri.019G083700 Populus trichocarpa HOM05D004490 ORTHO05D005353 1.6e-15 88.6 81 56.8
Psat6g187400 Pisum sativum HOM05D004490 ORTHO05D005353 2.0e-15 88.2 81 58.0
Solyc11g018670.3 Solanum lycopersicum HOM05D004490 ORTHO05D005353 2.7e-15 87.8 102 52.0
THA.LOC104816311 Tarenaya hassleriana HOM05D004490 ORTHO05D005353 2.7e-15 87.8 81 55.6
Eucgr.F04124 Eucalyptus grandis HOM05D004490 ORTHO05D005353 3.5e-15 87.4 80 57.5
Ciclev10000724m.g Citrus clementina HOM05D004490 ORTHO05D005353 5.9e-15 86.7 76 61.8
Sabra19G0095100 Salix brachista HOM05D004490 ORTHO05D005353 5.9e-15 86.7 81 55.6
ECA234G1973 Erigeron canadensis HOM05D004490 ORTHO05D005353 7.8e-15 86.3 124 42.7
Sc23g0001210 Simmondsia chinensis HOM05D004490 ORTHO05D005353 7.8e-15 86.3 81 55.6
Sopen11g009650 Solanum pennellii HOM05D004490 ORTHO05D005353 7.8e-15 86.3 102 51.0
Nitab4.5_0000277g0020 Nicotiana tabacum HOM05D004490 ORTHO05D005353 1.0e-14 85.9 101 49.5
Migut.C01248 Erythranthe guttata HOM05D004490 ORTHO05D005353 1.3e-14 85.5 82 59.8
FAN12G1529 Fragaria x ananassa HOM05D004490 ORTHO05D005353 1.3e-14 85.5 99 51.5
FAN17G1649 Fragaria x ananassa HOM05D004490 ORTHO05D005353 1.3e-14 85.5 99 51.5
TAR622G0885 Trochodendron aralioides HOM05D004490 ORTHO05D005353 1.3e-14 85.5 82 51.2
Os01g0521500 Oryza sativa ssp. japonica HOM05D004490 ORTHO05D005353 1.7e-14 85.1 74 63.5
FAN07G2233 Fragaria x ananassa HOM05D004490 ORTHO05D005353 2.3e-14 84.7 74 60.8
CSS0027711 Camellia sinensis var. sinensis HOM05D004490 ORTHO05D005353 2.9e-14 84.3 60 66.7
RcHm_v2.0_Chr4g0398261 Rosa chinensis HOM05D004490 ORTHO05D005353 2.9e-14 84.3 99 50.5
CAN.G905.35 Capsicum annuum HOM05D004490 ORTHO05D005353 3.9e-14 84.0 102 50.0
SEGI_07203 Sequoiadendron giganteum HOM05D000250 ORTHO05D386463 3.9e-14 84.0 57 70.2
TPR.G8816 Trifolium pratense HOM05D004490 ORTHO05D005353 3.9e-14 84.0 81 55.6
TAR630G0004 Trochodendron aralioides HOM05D004490 ORTHO05D005353 3.9e-14 84.0 82 50.0
Aqoxy2G03181 Aquilegia oxysepala HOM05D004490 ORTHO05D005353 5.0e-14 83.6 117 44.4
Cpa.g.sc66.44 Carica papaya HOM05D004490 ORTHO05D005353 5.0e-14 83.6 81 58.0
AUR62022689 Chenopodium quinoa HOM05D004490 ORTHO05D005353 5.0e-14 83.6 118 43.2
FvH4_4g06470 Fragaria vesca HOM05D004490 ORTHO05D005353 5.0e-14 83.6 99 50.5
Gorai.012G182200 Gossypium raimondii HOM05D004490 ORTHO05D005353 5.0e-14 83.6 106 47.2
EL10Ac1g00082 Beta vulgaris HOM05D004490 ORTHO05D005353 8.6e-14 82.8 118 43.2
AUR62004649 Chenopodium quinoa HOM05D004490 ORTHO05D005353 1.1e-13 82.4 118 43.2
Carub.0002s1095 Capsella rubella HOM05D004490 ORTHO05D005353 2.5e-13 81.3 104 42.3
AL2G20400 Arabidopsis lyrata HOM05D004490 ORTHO05D005353 3.3e-13 80.9 102 43.1
CSS0045593 Camellia sinensis var. sinensis HOM05D004490 ORTHO05D005353 3.3e-13 80.9 60 65.0
AT1G65280 Arabidopsis thaliana HOM05D004490 ORTHO05D005353 4.3e-13 80.5 102 43.1
CARHR056930 Cardamine hirsuta HOM05D004490 ORTHO05D005353 4.3e-13 80.5 102 43.1
Lj5g0002115 Lotus japonicus HOM05D004490 ORTHO05D005353 5.6e-13 80.1 74 56.8
HPP92_020159 Vanilla planifolia HOM05D004490 ORTHO05D005353 5.6e-13 80.1 71 57.7
A09p29500 Brassica napus HOM05D004490 ORTHO05D005353 9.5e-13 79.3 103 40.8
BraA09t38516Z Brassica rapa HOM05D004490 ORTHO05D005353 9.5e-13 79.3 103 40.8
CANSAT64G2929 Cannabis sativa HOM05D004490 ORTHO05D005353 9.5e-13 79.3 81 50.6
Thhalv10028527m.g Eutrema salsugineum HOM05D004490 ORTHO05D005353 1.6e-12 78.6 103 41.7
FAN11G3016 Fragaria x ananassa HOM05D004490 ORTHO05D005353 1.6e-12 78.6 83 55.4
HanXRQChr10g0290501 Helianthus annuus HOM05D004490 ORTHO05D005353 1.6e-12 78.6 124 41.9
Sp6g08010 Schrenkiella parvula HOM05D004490 ORTHO05D005353 1.6e-12 78.6 103 40.8
SHI09004 Sapria himalayana HOM05D004490 ORTHO05D005353 2.1e-12 78.2 81 51.9
PSO017G7136 Papaver somniferum HOM05D004490 ORTHO05D005353 2.8e-12 77.8 81 51.9
Rhsim11G0059700 Rhododendron simsii HOM05D004490 ORTHO05D005353 2.8e-12 77.8 83 53.0
Zm00001eb427930 Zea mays HOM05D004490 ORTHO05D005353 2.8e-12 77.8 83 55.4
BcaC04g20957 Brassica carinata HOM05D004490 ORTHO05D005353 3.6e-12 77.4 103 39.8
BNapus_Darmor_BZH_scaffold_278p00040 Brassica napus HOM05D004490 ORTHO05D005353 3.6e-12 77.4 103 39.8
BolC9t56586H Brassica oleracea HOM05D004490 ORTHO05D005353 3.6e-12 77.4 103 39.8
PSO063G0599 Papaver somniferum HOM05D004490 ORTHO05D005353 3.6e-12 77.4 81 53.1
BcaB01g01408 Brassica carinata HOM05D004490 ORTHO05D005353 8.0e-12 76.3 103 39.8
SEGI_05769 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 8.0e-12 76.3 116 40.5
AUR62022497 Chenopodium quinoa HOM05D004490 ORTHO05D005353 1.4e-11 75.5 101 45.5
Lsat_1_v5_gn_5_105541 Lactuca sativa HOM05D004490 ORTHO05D005353 1.4e-11 75.5 75 57.3
unitig_699.g19825 Utricularia gibba HOM05D004490 ORTHO05D005353 1.4e-11 75.5 75 57.3
FAN21G1156 Fragaria x ananassa HOM05D004490 ORTHO05D005353 1.8e-11 75.1 85 51.8
CDE02G3308 Ceratophyllum demersum HOM05D004490 ORTHO05D005353 4.0e-11 73.9 63 57.1
Aa31LG9G14890 Aethionema arabicum HOM05D004490 ORTHO05D005353 5.2e-11 73.6 75 50.7
SHI54375 Sapria himalayana HOM05D004490 ORTHO05D005353 5.2e-11 73.6 79 50.6
FvH4_3g44966 Fragaria vesca HOM05D004490 ORTHO05D005353 6.8e-11 73.2 62 59.7
Lj7A289G25 Lonicera japonica HOM05D004490 ORTHO05D005353 8.9e-11 72.8 138 39.1
SEGI_05224 Sequoiadendron giganteum HOM05D023998 ORTHO05D032816 8.9e-11 72.8 95 47.4
Peaxi162Scf00848g00115 Petunia axillaris HOM05D004490 ORTHO05D005353 1.2e-10 72.4 68 58.8
RcHm_v2.0_Chr5g0081671 Rosa chinensis HOM05D004490 ORTHO05D005353 1.2e-10 72.4 99 47.5
SHI41020 Sapria himalayana HOM05D004490 ORTHO05D005353 1.2e-10 72.4 79 49.4
RcHm_v2.0_Chr5g0082081 Rosa chinensis HOM05D004490 ORTHO05D005353 1.5e-10 72.0 78 53.8
CBR_g58400 Chara braunii HOM05D004490 ORTHO05D005353 2.6e-10 71.2 90 50.0
FvH4_3g44892 Fragaria vesca HOM05D004490 ORTHO05D005353 7.5e-10 69.7 62 58.1
RcHm_v2.0_Chr5g0082701 Rosa chinensis HOM05D004490 ORTHO05D005353 4.9e-09 67.0 99 46.5
SEGI_34013 Sequoiadendron giganteum HOM05D034529 ORTHO05D386044 3.2e-08 64.3 88 47.7
AagrBONN_evm.TU.Sc2ySwM_228.3521 Anthoceros agrestis HOM05D004490 ORTHO05D005353 5.4e-08 63.5 61 55.7
Gohir.D04G186001 Gossypium hirsutum HOM05D004490 ORTHO05D005353 9.2e-08 62.8 103 41.7
SEGI_17558 Sequoiadendron giganteum HOM05D000680 ORTHO05D000738 6.0e-07 60.1 41 73.2
SEGI_37693 Sequoiadendron giganteum HOM05D000070 ORTHO05D385204 1.7e-06 58.5 47 63.8
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 2.3e-06 58.2 33 78.8
SEGI_11131 Sequoiadendron giganteum HOM05D018713 ORTHO05D000093 2.3e-06 58.2 98 39.8
SEGI_29674 Sequoiadendron giganteum HOM05D000062 ORTHO05D000043 2.3e-06 58.2 67 47.8
SEGI_28126 Sequoiadendron giganteum HOM05D002886 ORTHO05D000093 3.0e-06 57.8 131 32.1
SEGI_19172 Sequoiadendron giganteum HOM05D000835 ORTHO05D385416 8.6e-06 56.2 32 81.2
SEGI_32418 Sequoiadendron giganteum HOM05D000006 ORTHO05D000001 8.6e-06 56.2 111 36.9


User provided reference genes

Program Settings