Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_30940 Sequoiadendron giganteum HOM05D003927 ORTHO05D004905 2.5e-62 241.9 116 100.0
AT2G35020 Arabidopsis thaliana HOM05D003927 ORTHO05D004905 1.5e-48 196.1 111 82.0
Duzib248G0257 Durio zibethinus HOM05D003927 ORTHO05D004905 1.5e-48 196.1 111 81.1
Thecc.02G005900 Theobroma cacao HOM05D003927 ORTHO05D004905 2.0e-48 195.7 111 81.1
BcaB02g09488 Brassica carinata HOM05D003927 ORTHO05D004905 2.6e-48 195.3 111 82.0
BcaC02g11582 Brassica carinata HOM05D003927 ORTHO05D004905 2.6e-48 195.3 111 81.1
A05p10690 Brassica napus HOM05D003927 ORTHO05D004905 2.6e-48 195.3 111 81.1
C04p13780 Brassica napus HOM05D003927 ORTHO05D004905 2.6e-48 195.3 111 81.1
BolC4t22968H Brassica oleracea HOM05D003927 ORTHO05D004905 2.6e-48 195.3 111 81.1
BraA05t20009Z Brassica rapa HOM05D003927 ORTHO05D004905 2.6e-48 195.3 111 81.1
CARHR129180 Cardamine hirsuta HOM05D003927 ORTHO05D004905 3.4e-48 194.9 111 81.1
Thhalv10007394m.g Eutrema salsugineum HOM05D003927 ORTHO05D004905 3.4e-48 194.9 111 82.0
THA.LOC104814353 Tarenaya hassleriana HOM05D003927 ORTHO05D004905 3.4e-48 194.9 114 78.9
CSS0033159 Camellia sinensis var. sinensis HOM05D003927 ORTHO05D004905 4.5e-48 194.5 111 81.1
AL4G31040 Arabidopsis lyrata HOM05D003927 ORTHO05D004905 5.9e-48 194.1 111 81.1
Actinidia22422 Actinidia chinensis HOM05D003927 ORTHO05D004905 7.7e-48 193.7 113 79.6
Eucgr.E04308 Eucalyptus grandis HOM05D003927 ORTHO05D004905 7.7e-48 193.7 114 78.1
Gohir.D12G047200 Gossypium hirsutum HOM05D003927 ORTHO05D004905 7.7e-48 193.7 111 79.3
Gorai.008G049800 Gossypium raimondii HOM05D003927 ORTHO05D004905 7.7e-48 193.7 111 79.3
Aa31LG9G16190 Aethionema arabicum HOM05D003927 ORTHO05D004905 1.0e-47 193.4 111 80.2
AL1G45460 Arabidopsis lyrata HOM05D003927 ORTHO05D004905 1.0e-47 193.4 111 81.1
Carub.0001s2946 Capsella rubella HOM05D003927 ORTHO05D004905 1.0e-47 193.4 111 81.1
CARHR030580 Cardamine hirsuta HOM05D003927 ORTHO05D004905 1.0e-47 193.4 111 81.1
Potri.001G159700 Populus trichocarpa HOM05D003927 ORTHO05D004905 1.0e-47 193.4 110 81.8
Sabra01G0132300 Salix brachista HOM05D003927 ORTHO05D004905 1.0e-47 193.4 110 81.8
TWI15G0787 Tripterygium wilfordii HOM05D003927 ORTHO05D004905 1.0e-47 193.4 111 78.4
Aa31LG2G15040 Aethionema arabicum HOM05D003927 ORTHO05D004905 1.3e-47 193.0 111 81.1
TWI38G0647 Tripterygium wilfordii HOM05D003927 ORTHO05D004905 1.3e-47 193.0 110 80.0
BcaC07g37780 Brassica carinata HOM05D003927 ORTHO05D004905 1.7e-47 192.6 111 81.1
A08p10790 Brassica napus HOM05D003927 ORTHO05D004905 1.7e-47 192.6 111 81.1
BolC8t48168H Brassica oleracea HOM05D003927 ORTHO05D004905 1.7e-47 192.6 111 81.1
BraA08t33076Z Brassica rapa HOM05D003927 ORTHO05D004905 1.7e-47 192.6 111 81.1
DCAR_003771 Daucus carota HOM05D003927 ORTHO05D004905 1.7e-47 192.6 111 80.2
Glyma.08G086700 Glycine max HOM05D003927 ORTHO05D004905 1.7e-47 192.6 111 78.4
Lj2A344G38 Lonicera japonica HOM05D003927 ORTHO05D004905 1.7e-47 192.6 111 80.2
SalBow8G3138 Salvia bowleyana HOM05D003927 ORTHO05D004905 1.7e-47 192.6 111 81.1
Sp1g26910 Schrenkiella parvula HOM05D003927 ORTHO05D004905 1.7e-47 192.6 111 81.1
Atru.chr10.419 Acer truncatum HOM05D003927 ORTHO05D004905 2.2e-47 192.2 111 80.2
Ciclev10014997m.g Citrus clementina HOM05D003927 ORTHO05D004905 2.2e-47 192.2 110 80.9
COL.COLO4_17634 Corchorus olitorius HOM05D003927 ORTHO05D004905 2.2e-47 192.2 110 80.0
MELO3C007022.2 Cucumis melo HOM05D003927 ORTHO05D004905 2.2e-47 192.2 111 79.3
CsaV3_6G052860 Cucumis sativus L. HOM05D003927 ORTHO05D004905 2.2e-47 192.2 111 79.3
Thhalv10016553m.g Eutrema salsugineum HOM05D003927 ORTHO05D004905 2.2e-47 192.2 111 81.1
MBI18_g31367_MAGBIO Magnolia biondii HOM05D003927 ORTHO05D004905 2.2e-47 192.2 111 78.4
Manes.03G074000 Manihot esculenta HOM05D003927 ORTHO05D004905 2.2e-47 192.2 111 80.2
Phvul.002G190700 Phaseolus vulgaris HOM05D003927 ORTHO05D004905 2.2e-47 192.2 110 79.1
VMungo0251G3294 Vigna mungo HOM05D003927 ORTHO05D004905 2.2e-47 192.2 110 79.1
CiPaw.09G074500 Carya illinoinensis HOM05D003927 ORTHO05D004905 2.9e-47 191.8 111 78.4
ClCG01G025630 Citrullus lanatus HOM05D003927 ORTHO05D004905 2.9e-47 191.8 111 79.3
Gohir.A03G217900 Gossypium hirsutum HOM05D003927 ORTHO05D004905 2.9e-47 191.8 110 80.9
Prupe.4G115400 Prunus persica HOM05D003927 ORTHO05D004905 2.9e-47 191.8 110 80.0
Rhsim13G0129600 Rhododendron simsii HOM05D003927 ORTHO05D004905 2.9e-47 191.8 110 80.0
RcHm_v2.0_Chr5g0020631 Rosa chinensis HOM05D003927 ORTHO05D004905 2.9e-47 191.8 111 78.4
FvH4_3g12660 Fragaria vesca HOM05D003927 ORTHO05D004905 3.8e-47 191.4 110 79.1
FAN16G1436 Fragaria x ananassa HOM05D003927 ORTHO05D004905 3.8e-47 191.4 110 79.1
FAN21G3157 Fragaria x ananassa HOM05D003927 ORTHO05D004905 3.8e-47 191.4 110 79.1
FAN25G3197 Fragaria x ananassa HOM05D003927 ORTHO05D004905 3.8e-47 191.4 110 79.1
MD05G1248900 Malus domestica HOM05D003927 ORTHO05D004905 3.8e-47 191.4 110 80.0
MD10G1229400 Malus domestica HOM05D003927 ORTHO05D004905 5.0e-47 191.0 110 80.0
Potri.003G074700 Populus trichocarpa HOM05D003927 ORTHO05D004905 5.0e-47 191.0 110 80.0
Cpa.g.sc30.136 Carica papaya HOM05D003927 ORTHO05D004905 6.5e-47 190.7 110 79.1
Gohir.A12G048400 Gossypium hirsutum HOM05D003927 ORTHO05D004905 6.5e-47 190.7 111 78.4
Lj4g0018518 Lotus japonicus HOM05D003927 ORTHO05D004905 6.5e-47 190.7 110 79.1
Lalb_Chr07g0188401 Lupinus albus HOM05D003927 ORTHO05D004905 6.5e-47 190.7 110 79.1
QL11p013470 Quercus lobata HOM05D003927 ORTHO05D004905 6.5e-47 190.7 110 79.1
arahy.Tifrunner.gnm1.ann1.YAS9I4 Arachis hypogaea HOM05D003927 ORTHO05D004905 8.5e-47 190.3 110 79.1
Dinv29313 Davidia involucrata HOM05D003927 ORTHO05D004905 8.5e-47 190.3 106 83.0
Ca_18249_v3 Cicer arietinum L. HOM05D003927 ORTHO05D004905 1.1e-46 189.9 110 78.2
Haze_06142 Corylus avellana HOM05D003927 ORTHO05D004905 1.1e-46 189.9 111 79.3
SGA_v2.0_scaffold638G53308 Striga asiatica HOM05D003927 ORTHO05D004905 1.1e-46 189.9 111 78.4
SGA_v2.0_scaffold77G25372 Striga asiatica HOM05D003927 ORTHO05D004905 1.1e-46 189.9 111 78.4
Cfa000676 Carpinus fangiana HOM05D003927 ORTHO05D004905 1.4e-46 189.5 110 80.0
Medtr4g094668 Medicago truncatula HOM05D003927 ORTHO05D004905 1.4e-46 189.5 111 76.6
Sabra03G0045400 Salix brachista HOM05D003927 ORTHO05D004905 1.4e-46 189.5 110 80.0
Sed0013384 Sechium edule HOM05D003927 ORTHO05D004905 1.4e-46 189.5 110 79.1
TPR.G2935 Trifolium pratense HOM05D003927 ORTHO05D004905 1.4e-46 189.5 110 79.1
arahy.Tifrunner.gnm1.ann1.QMDN7F Arachis hypogaea HOM05D003927 ORTHO05D004905 1.9e-46 189.1 110 78.2
BcaB04g18183 Brassica carinata HOM05D003927 ORTHO05D004905 1.9e-46 189.1 111 80.2
BcaB07g32771 Brassica carinata HOM05D003927 ORTHO05D004905 1.9e-46 189.1 111 80.2
ECA238G4411 Erigeron canadensis HOM05D003927 ORTHO05D004905 1.9e-46 189.1 110 80.0
Lsat_1_v5_gn_2_61101 Lactuca sativa HOM05D003927 ORTHO05D004905 1.9e-46 189.1 110 80.0
Nn7g38278 Nelumbo nucifera HOM05D003927 ORTHO05D004905 1.9e-46 189.1 110 78.2
PGR004G1431 Punica granatum HOM05D003927 ORTHO05D004905 1.9e-46 189.1 110 79.1
PGR042G2298 Punica granatum HOM05D003927 ORTHO05D004905 1.9e-46 189.1 111 76.6
Sp4g17300 Schrenkiella parvula HOM05D003927 ORTHO05D004905 1.9e-46 189.1 111 79.3
TAR626G0108 Trochodendron aralioides HOM05D003927 ORTHO05D004905 1.9e-46 189.1 110 77.3
HPP92_016424 Vanilla planifolia HOM05D003927 ORTHO05D004905 1.9e-46 189.1 113 75.2
GSVIVG01012124001 Vitis vinifera HOM05D003927 ORTHO05D004905 1.9e-46 189.1 114 74.6
PSO541G2426 Papaver somniferum HOM05D003927 ORTHO05D004905 2.5e-46 188.7 114 75.4
Duzib132G1257 Durio zibethinus HOM05D003927 ORTHO05D004905 3.2e-46 188.3 111 76.6
Hma1.2p1_0510F.1_g168820 Hydrangea macrophylla HOM05D003927 ORTHO05D004905 3.2e-46 188.3 111 78.4
Oeu058944.1 Olea europaea HOM05D003927 ORTHO05D004905 3.2e-46 188.3 111 78.4
THA.LOC104798559 Tarenaya hassleriana HOM05D003927 ORTHO05D004905 3.2e-46 188.3 111 81.1
CANSAT35G1049 Cannabis sativa HOM05D003927 ORTHO05D004905 5.5e-46 187.6 111 76.6
PSO675G6709 Papaver somniferum HOM05D003927 ORTHO05D004905 5.5e-46 187.6 114 74.6
Peaxi162Scf00199g00517 Petunia axillaris HOM05D003927 ORTHO05D004905 5.5e-46 187.6 111 77.5
BcaC05g27140 Brassica carinata HOM05D003927 ORTHO05D004905 7.2e-46 187.2 111 79.3
A09p35130 Brassica napus HOM05D003927 ORTHO05D004905 7.2e-46 187.2 111 79.3
C05p30260 Brassica napus HOM05D003927 ORTHO05D004905 7.2e-46 187.2 111 79.3
BolC5t31766H Brassica oleracea HOM05D003927 ORTHO05D004905 7.2e-46 187.2 111 79.3
AUR62037029 Chenopodium quinoa HOM05D003927 ORTHO05D004905 7.2e-46 187.2 110 80.0
HanXRQChr14g0440241 Helianthus annuus HOM05D003927 ORTHO05D004905 7.2e-46 187.2 110 79.1
MSTRG.7601 Avicennia marina HOM05D003927 ORTHO05D004905 9.4e-46 186.8 111 76.6
Cc00_g22880 Coffea canephora HOM05D003927 ORTHO05D004905 9.4e-46 186.8 109 78.9
BraA09t39043Z Brassica rapa HOM05D003927 ORTHO05D004905 1.6e-45 186.0 111 78.4
CAN.G149.2 Capsicum annuum HOM05D003927 ORTHO05D004905 1.6e-45 186.0 111 75.7
Solyc02g068530.4 Solanum lycopersicum HOM05D003927 ORTHO05D004905 1.6e-45 186.0 111 74.8
Sopen02g017670 Solanum pennellii HOM05D003927 ORTHO05D004905 1.6e-45 186.0 111 74.8
PGSC0003DMG400010448 Solanum tuberosum HOM05D003927 ORTHO05D004905 1.6e-45 186.0 111 74.8
CANSAT64G2986 Cannabis sativa HOM05D003927 ORTHO05D004905 2.1e-45 185.7 110 77.3
HPP92_026366 Vanilla planifolia HOM05D003927 ORTHO05D004905 2.1e-45 185.7 105 80.0
SGA_v2.0_scaffold298G47698 Striga asiatica HOM05D003927 ORTHO05D004905 2.7e-45 185.3 111 76.6
EL10Ac7g16905 Beta vulgaris HOM05D003927 ORTHO05D004905 3.6e-45 184.9 108 80.6
Carub.0004s1671 Capsella rubella HOM05D003927 ORTHO05D004905 3.6e-45 184.9 107 79.4
AUR62006193 Chenopodium quinoa HOM05D003927 ORTHO05D004905 4.6e-45 184.5 110 78.2
Aqoxy3G04338 Aquilegia oxysepala HOM05D003927 ORTHO05D004905 1.0e-44 183.3 111 76.6
SGA_v2.0_scaffold175G39352 Striga asiatica HOM05D003927 ORTHO05D004905 1.0e-44 183.3 107 77.6
Migut.M01998 Erythranthe guttata HOM05D003927 ORTHO05D004905 1.4e-44 183.0 113 75.2
HanXRQChr15g0483481 Helianthus annuus HOM05D003927 ORTHO05D004905 1.4e-44 183.0 110 76.4
Psat7g088440 Pisum sativum HOM05D003927 ORTHO05D004905 1.8e-44 182.6 108 77.8
Os08g0206900 Oryza sativa ssp. japonica HOM05D003927 ORTHO05D004905 3.0e-44 181.8 111 75.7
Gorai.005G268300 Gossypium raimondii HOM05D003927 ORTHO05D004905 1.5e-43 179.5 110 77.3
Ah.08g210510 Amaranthus hybridus HOM05D003927 ORTHO05D004905 2.0e-43 179.1 108 77.8
ATR0763G183 Amborella trichopoda HOM05D003927 ORTHO05D004905 2.0e-43 179.1 110 74.5
CDE12G0287 Ceratophyllum demersum HOM05D003927 ORTHO05D004905 5.7e-43 177.6 111 74.8
Zm00001eb070940 Zea mays HOM05D003927 ORTHO05D004905 7.4e-43 177.2 111 72.1
Zm00001eb430780 Zea mays HOM05D003927 ORTHO05D004905 7.4e-43 177.2 111 72.1
SMO351G0243 Selaginella moellendorffii HOM05D003927 ORTHO05D004905 6.3e-42 174.1 109 71.6
Hund12931 Selenicereus undatus HOM05D003927 ORTHO05D004905 6.5e-39 164.1 136 61.8
HanXRQChr15g0483471 Helianthus annuus HOM05D003927 ORTHO05D004905 7.2e-38 160.6 128 63.3
Lj1C1147G9 Lonicera japonica HOM05D003927 ORTHO05D004905 7.4e-35 150.6 84 81.0
Zm00001eb413790 Zea mays HOM05D003927 ORTHO05D004905 1.7e-34 149.4 111 65.8
Nitab4.5_0006246g0020 Nicotiana tabacum HOM05D003927 ORTHO05D004905 3.7e-34 148.3 83 80.7
Glyma.05G132100 Glycine max HOM05D003927 ORTHO05D004905 6.5e-31 137.5 81 76.5
Dinv10533 Davidia involucrata HOM05D003927 ORTHO05D004905 1.5e-30 136.3 83 74.7
SHI20747 Sapria himalayana HOM05D003927 ORTHO05D004905 1.5e-30 136.3 84 75.0
TAR624G0604 Trochodendron aralioides HOM05D003927 ORTHO05D004905 1.9e-30 136.0 84 75.0
TAR625G0767 Trochodendron aralioides HOM05D003927 ORTHO05D004905 1.9e-30 136.0 81 76.5
Gohir.D02G239900 Gossypium hirsutum HOM05D003927 ORTHO05D004905 5.5e-30 134.4 110 60.9
TAR628G0742 Trochodendron aralioides HOM05D003927 ORTHO05D004905 1.0e-28 130.2 80 73.8
unitig_748.g7494 Utricularia gibba HOM05D003927 ORTHO05D004905 5.9e-24 114.4 69 76.8
CBR_g45707 Chara braunii HOM05D003927 ORTHO05D004905 1.3e-23 113.2 119 47.1
Cre07.g345300 Chlamydomonas reinhardtii HOM05D003927 ORTHO05D004905 8.5e-23 110.5 108 53.7
Sp2g07060 Schrenkiella parvula HOM05D003281 ORTHO05D004128 1.8e-20 102.8 86 59.3
PRCOL_00005739 Prasinoderma coloniale HOM05D003927 ORTHO05D004905 8.3e-18 94.0 105 48.6
Nitab4.5_0000443g0090 Nicotiana tabacum HOM05D003927 ORTHO05D004905 5.3e-17 91.3 52 78.8
Cfa023099 Carpinus fangiana HOM05D003927 ORTHO05D004905 2.0e-16 89.4 106 44.3
MCO02G083 Micromonas commoda HOM05D003927 ORTHO05D004905 7.2e-14 80.9 102 44.1
Atru.ctg1436.5 Acer truncatum HOM05D003927 ORTHO05D004905 3.7e-10 68.6 90 41.1
AagrBONN_evm.TU.Sc2ySwM_228.1844 Anthoceros agrestis HOM05D007300 ORTHO05D004905 6.6e-07 57.8 54 57.4
Pp3c15_14250 Physcomitrium patens HOM05D007300 ORTHO05D009301 1.5e-06 56.6 59 54.2
Pp3c4_17200 Physcomitrium patens HOM05D003927 ORTHO05D004905 1.9e-06 56.2 59 57.6
Mapoly0019s0078 Marchantia polymorpha HOM05D007300 ORTHO05D009301 7.2e-06 54.3 59 49.2


User provided reference genes

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