Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_30930 Sequoiadendron giganteum HOM05D003314 ORTHO05D004164 3.4e-150 535.0 278 100.0
ATR0681G099 Amborella trichopoda HOM05D003314 ORTHO05D004164 1.7e-56 223.8 250 56.8
GSVIVG01024699001 Vitis vinifera HOM05D003314 ORTHO05D004164 2.4e-55 219.9 247 57.5
Nn2g10926 Nelumbo nucifera HOM05D003314 ORTHO05D004164 1.5e-54 217.2 248 55.6
Atru.chr3.4168 Acer truncatum HOM05D003314 ORTHO05D004164 2.0e-54 216.9 250 55.6
PSO017G4706 Papaver somniferum HOM05D003314 ORTHO05D004164 7.7e-54 214.9 251 55.8
CiPaw.13G074400 Carya illinoinensis HOM05D003314 ORTHO05D004164 1.0e-53 214.5 252 55.2
PSO170G0130 Papaver somniferum HOM05D003314 ORTHO05D004164 1.0e-53 214.5 251 55.8
Ciclev10027872m.g Citrus clementina HOM05D003314 ORTHO05D004164 1.3e-53 214.2 252 54.8
Hma1.2p1_1981F.1_g309920 Hydrangea macrophylla HOM05D003314 ORTHO05D004164 6.5e-53 211.8 247 55.9
QL01p039122 Quercus lobata HOM05D003314 ORTHO05D004164 6.5e-53 211.8 250 55.2
TAR623G0703 Trochodendron aralioides HOM05D003314 ORTHO05D004164 8.5e-53 211.5 247 56.3
Cpa.g.sc2.427 Carica papaya HOM05D003314 ORTHO05D004164 1.1e-52 211.1 248 55.2
THA.LOC104800751 Tarenaya hassleriana HOM05D003314 ORTHO05D004164 1.1e-52 211.1 247 55.9
CSS0023090 Camellia sinensis var. sinensis HOM05D003314 ORTHO05D004164 1.4e-52 210.7 247 54.7
Eucgr.J01899 Eucalyptus grandis HOM05D003314 ORTHO05D004164 2.5e-52 209.9 225 58.2
TWI79G1066 Tripterygium wilfordii HOM05D003314 ORTHO05D004164 3.2e-52 209.5 248 55.6
Cc01_g14510 Coffea canephora HOM05D003314 ORTHO05D004164 4.2e-52 209.1 247 55.9
CiPaw.14G057100 Carya illinoinensis HOM05D003314 ORTHO05D004164 5.5e-52 208.8 249 53.4
Oeu051518.1 Olea europaea HOM05D003314 ORTHO05D004164 5.5e-52 208.8 248 54.8
ClCG02G019450 Citrullus lanatus HOM05D003314 ORTHO05D004164 9.4e-52 208.0 247 55.1
Potri.009G073800 Populus trichocarpa HOM05D003314 ORTHO05D004164 9.4e-52 208.0 249 54.6
Prupe.6G053800 Prunus persica HOM05D003314 ORTHO05D004164 9.4e-52 208.0 226 56.6
TAR636G3324 Trochodendron aralioides HOM05D003314 ORTHO05D004164 9.4e-52 208.0 246 55.7
vmacro02947 Vaccinium macrocarpon HOM05D003314 ORTHO05D004164 1.2e-51 207.6 258 51.9
MD03G1064800 Malus domestica HOM05D003314 ORTHO05D004164 1.6e-51 207.2 247 54.3
PGR119G0996 Punica granatum HOM05D003314 ORTHO05D004164 1.6e-51 207.2 252 53.6
Sc21g0000200 Simmondsia chinensis HOM05D003314 ORTHO05D004164 1.6e-51 207.2 224 58.9
MSTRG.17878 Avicennia marina HOM05D003314 ORTHO05D004164 2.1e-51 206.8 248 54.8
CsaV3_6G016080 Cucumis sativus L. HOM05D003314 ORTHO05D004164 2.1e-51 206.8 249 55.4
Dinv28665 Davidia involucrata HOM05D003314 ORTHO05D004164 2.1e-51 206.8 249 54.6
Medtr3g464770 Medicago truncatula HOM05D003314 ORTHO05D004164 2.7e-51 206.5 247 53.8
CSS0022626 Camellia sinensis var. sinensis HOM05D003314 ORTHO05D004164 3.6e-51 206.1 248 54.0
CSS0049027 Camellia sinensis var. sinensis HOM05D003314 ORTHO05D004164 3.6e-51 206.1 248 54.0
CANSAT54G2389 Cannabis sativa HOM05D003314 ORTHO05D004164 4.7e-51 205.7 248 53.2
MD11G1068800 Malus domestica HOM05D003314 ORTHO05D004164 4.7e-51 205.7 248 53.6
Migut.N00780 Erythranthe guttata HOM05D003314 ORTHO05D004164 6.1e-51 205.3 245 54.7
Aqoxy4G02458 Aquilegia oxysepala HOM05D003314 ORTHO05D004164 8.0e-51 204.9 247 53.8
MSTRG.12679 Avicennia marina HOM05D003314 ORTHO05D004164 1.4e-50 204.1 248 54.0
MELO3C026830.2 Cucumis melo HOM05D003314 ORTHO05D004164 1.4e-50 204.1 225 58.7
THA.LOC104815810 Tarenaya hassleriana HOM05D003314 ORTHO05D004164 1.4e-50 204.1 221 57.0
VMungo0540G1658 Vigna mungo HOM05D003314 ORTHO05D004164 1.4e-50 204.1 240 54.2
Potri.001G279100 Populus trichocarpa HOM05D003314 ORTHO05D004164 2.3e-50 203.4 251 53.4
COL.COLO4_11092 Corchorus olitorius HOM05D003314 ORTHO05D004164 3.0e-50 203.0 247 54.3
Peaxi162Scf00540g00022 Petunia axillaris HOM05D003314 ORTHO05D004164 3.0e-50 203.0 250 54.0
Sed0000995 Sechium edule HOM05D003314 ORTHO05D004164 3.0e-50 203.0 249 55.0
TWI31G0289 Tripterygium wilfordii HOM05D003314 ORTHO05D004164 3.0e-50 203.0 248 54.4
Lj1A130T38 Lonicera japonica HOM05D003314 ORTHO05D004164 5.2e-50 202.2 225 56.0
SalBow2G2371 Salvia bowleyana HOM05D003314 ORTHO05D004164 5.2e-50 202.2 247 54.3
Thhalv10006901m.g Eutrema salsugineum HOM05D003314 ORTHO05D004164 6.7e-50 201.8 250 53.2
FvH4_3g39080 Fragaria vesca HOM05D003314 ORTHO05D004164 8.8e-50 201.4 244 54.9
Lalb_Chr15g0083041 Lupinus albus HOM05D003314 ORTHO05D004164 8.8e-50 201.4 247 51.8
RcHm_v2.0_Chr5g0070401 Rosa chinensis HOM05D003314 ORTHO05D004164 8.8e-50 201.4 245 54.7
Haze_24369 Corylus avellana HOM05D003314 ORTHO05D004164 1.5e-49 200.7 240 55.4
Psat5g157680 Pisum sativum HOM05D003314 ORTHO05D004164 1.5e-49 200.7 246 54.9
Dinv09644 Davidia involucrata HOM05D003314 ORTHO05D004164 2.0e-49 200.3 247 53.4
Migut.O00636 Erythranthe guttata HOM05D003314 ORTHO05D004164 2.0e-49 200.3 218 57.8
Aa31LG1G6350 Aethionema arabicum HOM05D003314 ORTHO05D004164 2.6e-49 199.9 235 53.6
Cfa011730 Carpinus fangiana HOM05D003314 ORTHO05D004164 2.6e-49 199.9 257 51.4
Manes.18G141800 Manihot esculenta HOM05D003314 ORTHO05D004164 2.6e-49 199.9 251 53.4
Duzib168G0330 Durio zibethinus HOM05D003314 ORTHO05D004164 3.3e-49 199.5 248 53.6
HanXRQChr08g0229151 Helianthus annuus HOM05D003314 ORTHO05D004164 3.3e-49 199.5 222 56.8
Thecc.09G352300 Theobroma cacao HOM05D003314 ORTHO05D004164 3.3e-49 199.5 245 52.2
arahy.Tifrunner.gnm1.ann1.99UL3I Arachis hypogaea HOM05D003314 ORTHO05D004164 4.4e-49 199.1 248 52.0
arahy.Tifrunner.gnm1.ann1.H173G9 Arachis hypogaea HOM05D003314 ORTHO05D004164 5.7e-49 198.7 247 52.2
A08p35790 Brassica napus HOM05D003314 ORTHO05D004164 5.7e-49 198.7 247 51.8
BraA08t35486Z Brassica rapa HOM05D003314 ORTHO05D004164 5.7e-49 198.7 247 51.8
Rhsim13G0067500 Rhododendron simsii HOM05D003314 ORTHO05D004164 5.7e-49 198.7 246 53.3
SGA_v2.0_scaffold120G32908 Striga asiatica HOM05D003314 ORTHO05D004164 5.7e-49 198.7 222 57.7
C08p02820 Brassica napus HOM05D003314 ORTHO05D004164 7.4e-49 198.4 247 51.4
BolC8t47077H Brassica oleracea HOM05D003314 ORTHO05D004164 7.4e-49 198.4 247 51.4
FAN21G3397 Fragaria x ananassa HOM05D003314 ORTHO05D004164 1.3e-48 197.6 244 54.9
Glyma.11G169700 Glycine max HOM05D003314 ORTHO05D004164 1.3e-48 197.6 246 52.8
FAN25G2774 Fragaria x ananassa HOM05D003314 ORTHO05D004164 2.2e-48 196.8 222 58.1
Nitab4.5_0000839g0080 Nicotiana tabacum HOM05D003314 ORTHO05D004164 2.2e-48 196.8 247 53.4
TPR.G32920 Trifolium pratense HOM05D003314 ORTHO05D004164 2.2e-48 196.8 246 54.1
AL1G17230 Arabidopsis lyrata HOM05D003314 ORTHO05D004164 3.7e-48 196.1 238 52.5
ECA247G1043 Erigeron canadensis HOM05D003314 ORTHO05D004164 3.7e-48 196.1 246 52.8
Glyma.18G060600 Glycine max HOM05D003314 ORTHO05D004164 6.3e-48 195.3 246 52.8
BcaC07g42027 Brassica carinata HOM05D003314 ORTHO05D004164 8.2e-48 194.9 249 51.4
C08p50810 Brassica napus HOM05D003314 ORTHO05D004164 8.2e-48 194.9 249 51.4
BolC8t52609H Brassica oleracea HOM05D003314 ORTHO05D004164 8.2e-48 194.9 249 51.4
CAN.G1095.9 Capsicum annuum HOM05D003314 ORTHO05D004164 1.1e-47 194.5 273 49.5
Sp1g05830 Schrenkiella parvula HOM05D003314 ORTHO05D004164 1.1e-47 194.5 224 54.5
Carub.0001s0639 Capsella rubella HOM05D003314 ORTHO05D004164 1.4e-47 194.1 239 52.7
CARHR006800 Cardamine hirsuta HOM05D003314 ORTHO05D004164 2.4e-47 193.4 254 51.2
BraA09t42000Z Brassica rapa HOM05D003314 ORTHO05D004164 3.1e-47 193.0 249 51.0
Lj6g0001244 Lotus japonicus HOM05D003314 ORTHO05D004164 3.1e-47 193.0 240 54.2
Sopen06g033530 Solanum pennellii HOM05D003314 ORTHO05D004164 4.1e-47 192.6 250 52.8
Solyc06g082150.4 Solanum lycopersicum HOM05D003314 ORTHO05D004164 5.3e-47 192.2 247 53.0
MBI15_g29380_MAGBIO Magnolia biondii HOM05D003314 ORTHO05D004164 9.1e-47 191.4 307 46.3
Phvul.006G069900 Phaseolus vulgaris HOM05D003314 ORTHO05D004164 9.1e-47 191.4 242 52.1
PGSC0003DMG400030370 Solanum tuberosum HOM05D003314 ORTHO05D004164 2.0e-46 190.3 247 53.0
BolC5t29289H Brassica oleracea HOM05D003314 ORTHO05D004164 3.5e-46 189.5 248 50.8
CDE12G0129 Ceratophyllum demersum HOM05D003314 ORTHO05D004164 4.5e-46 189.1 267 50.6
A10p05630 Brassica napus HOM05D003314 ORTHO05D004164 5.9e-46 188.7 248 50.4
BraA10t42824Z Brassica rapa HOM05D003314 ORTHO05D004164 5.9e-46 188.7 248 50.4
AT1G07110 Arabidopsis thaliana HOM05D003314 ORTHO05D004164 7.7e-46 188.3 244 50.8
Glyma.02G228700 Glycine max HOM05D003314 ORTHO05D004164 1.0e-45 188.0 245 49.4
Lsat_1_v5_gn_9_19140 Lactuca sativa HOM05D003314 ORTHO05D004164 3.8e-45 186.0 245 52.7
EL10Ac9g22391 Beta vulgaris HOM05D003314 ORTHO05D004164 5.0e-45 185.7 247 49.8
BcaB03g13407 Brassica carinata HOM05D003314 ORTHO05D004164 5.0e-45 185.7 247 49.4
C05p05170 Brassica napus HOM05D003314 ORTHO05D004164 1.5e-44 184.1 248 49.6
HanXRQChr01g0011671 Helianthus annuus HOM05D003314 ORTHO05D004164 1.9e-44 183.7 242 49.6
Lj2A1086G63 Lonicera japonica HOM05D003314 ORTHO05D004164 1.9e-44 183.7 247 50.6
Medtr5g071900 Medicago truncatula HOM05D003314 ORTHO05D004164 9.4e-44 181.4 246 49.2
Ca_05629_v3 Cicer arietinum L. HOM05D003314 ORTHO05D004164 1.2e-43 181.0 250 48.8
Ca_14964_v3 Cicer arietinum L. HOM05D003314 ORTHO05D004164 1.2e-43 181.0 234 52.1
LjContig00141g0002673 Lotus japonicus HOM05D003314 ORTHO05D004164 1.2e-43 181.0 247 49.8
Lsat_1_v5_gn_5_172641 Lactuca sativa HOM05D003314 ORTHO05D004164 2.7e-43 179.9 241 50.2
Nitab4.5_0002352g0010 Nicotiana tabacum HOM05D003314 ORTHO05D004164 2.7e-43 179.9 226 53.5
Glyma.14G195700 Glycine max HOM05D003314 ORTHO05D004164 1.4e-42 177.6 247 49.0
Gorai.003G146900 Gossypium raimondii HOM05D003314 ORTHO05D004164 2.3e-42 176.8 246 48.4
Gohir.A03G028500 Gossypium hirsutum HOM05D003314 ORTHO05D004164 3.0e-42 176.4 246 48.4
Gohir.D03G140100 Gossypium hirsutum HOM05D003314 ORTHO05D004164 4.0e-42 176.0 246 48.4
Os05g0164100 Oryza sativa ssp. japonica HOM05D003314 ORTHO05D004164 6.8e-42 175.3 246 48.0
arahy.Tifrunner.gnm1.ann1.UVU1B7 Arachis hypogaea HOM05D003314 ORTHO05D004164 8.8e-42 174.9 248 48.4
A09p66600 Brassica napus HOM05D003314 ORTHO05D004164 1.2e-41 174.5 239 49.4
arahy.Tifrunner.gnm1.ann1.Y0JIV8 Arachis hypogaea HOM05D003314 ORTHO05D004164 1.5e-41 174.1 248 48.8
ECA248G0301 Erigeron canadensis HOM05D003314 ORTHO05D004164 2.0e-41 173.7 242 49.6
BcaC05g24676 Brassica carinata HOM05D003314 ORTHO05D004164 4.4e-41 172.6 254 48.8
Psat2g055960 Pisum sativum HOM05D003314 ORTHO05D004164 4.4e-41 172.6 247 47.4
Lalb_Chr17g0345221 Lupinus albus HOM05D003314 ORTHO05D004164 5.7e-41 172.2 217 51.6
Nitab4.5_0000752g0070 Nicotiana tabacum HOM05D003314 ORTHO05D004164 5.7e-41 172.2 243 49.8
Sabra09G0055800 Salix brachista HOM05D003314 ORTHO05D004164 5.7e-41 172.2 260 47.7
SGA_v2.0_scaffold146G36142 Striga asiatica HOM05D003314 ORTHO05D004164 2.8e-40 169.9 235 48.5
Hund08127 Selenicereus undatus HOM05D003314 ORTHO05D004164 1.4e-39 167.5 281 44.1
TPR.G5069 Trifolium pratense HOM05D003314 ORTHO05D004164 2.4e-39 166.8 246 47.6
Zm00001eb282250 Zea mays HOM05D003314 ORTHO05D004164 3.1e-39 166.4 257 46.3
Zm00001eb013550 Zea mays HOM05D003314 ORTHO05D004164 4.1e-39 166.0 221 49.8
Actinidia32631 Actinidia chinensis HOM05D003314 ORTHO05D004164 1.0e-37 161.4 207 50.7
Phvul.008G259400 Phaseolus vulgaris HOM05D003314 ORTHO05D004164 1.0e-37 161.4 246 47.6
Mapoly0056s0097 Marchantia polymorpha HOM05D003314 ORTHO05D004164 2.9e-37 159.8 221 48.4
Glyma.11G172200 Glycine max HOM05D003314 ORTHO05D004164 3.8e-37 159.5 212 51.4
CDE06G0062 Ceratophyllum demersum HOM05D003314 ORTHO05D004164 5.0e-37 159.1 254 45.3
AUR62041217 Chenopodium quinoa HOM05D003314 ORTHO05D004164 1.8e-34 150.6 233 42.9
AagrBONN_evm.TU.Sc2ySwM_117.3149 Anthoceros agrestis HOM05D003314 ORTHO05D004164 6.8e-34 148.7 251 42.6
SEGI_41300 Sequoiadendron giganteum HOM05D003314 ORTHO05D015881 1.5e-33 147.5 116 69.8
Hma1.2p1_0223F.1_g094300 Hydrangea macrophylla HOM05D003314 ORTHO05D004164 4.4e-33 146.0 134 64.9
Ah.01g002410 Amaranthus hybridus HOM05D003314 ORTHO05D004164 6.3e-32 142.1 286 39.9
DCAR_007359 Daucus carota HOM05D003314 ORTHO05D004164 6.3e-32 142.1 238 45.4
HPP92_013781 Vanilla planifolia HOM05D003314 ORTHO05D004164 1.1e-31 141.4 213 46.5
Os03g0294200 Oryza sativa ssp. japonica HOM05D003314 ORTHO05D004164 5.4e-31 139.0 113 69.9
unitig_60.g25552 Utricularia gibba HOM05D003314 ORTHO05D004164 3.5e-30 136.3 246 42.3
AUR62025049 Chenopodium quinoa HOM05D003314 ORTHO05D004164 4.5e-30 136.0 213 44.1
Pp3c25_1530 Physcomitrium patens HOM05D003314 ORTHO05D004164 5.9e-30 135.6 233 42.9
Pp3c16_2340 Physcomitrium patens HOM05D003314 ORTHO05D004164 1.0e-29 134.8 235 39.6
Pp3c21_10950 Physcomitrium patens HOM05D003314 ORTHO05D004164 2.3e-29 133.7 218 43.1
SMO244G0010 Selaginella moellendorffii HOM05D003314 ORTHO05D004164 1.9e-28 130.6 128 56.2
Pp3c19_20300 Physcomitrium patens HOM05D003314 ORTHO05D004164 5.2e-26 122.5 225 40.9
Duzib150G1198 Durio zibethinus HOM05D003314 ORTHO05D004164 8.9e-26 121.7 179 49.2
SMO174G0065 Selaginella moellendorffii HOM05D003314 ORTHO05D004164 1.1e-23 114.8 72 80.6
PRCOL_00004422 Prasinoderma coloniale HOM05D003314 ORTHO05D004164 2.9e-16 90.1 110 50.0
Hma1.2p1_1747F.1_g300540 Hydrangea macrophylla HOM05D003314 ORTHO05D004164 1.7e-13 80.9 139 45.3
BcaC07g42443 Brassica carinata HOM05D003314 ORTHO05D004164 2.3e-13 80.5 135 43.0
Carub.0001s3494 Capsella rubella HOM05D003314 ORTHO05D114632 1.8e-10 70.9 41 78.0
Cre16.g652150 Chlamydomonas reinhardtii HOM05D003314 ORTHO05D004164 1.5e-09 67.8 54 57.4
SEGI_40801 Sequoiadendron giganteum HOM05D003314 ORTHO05D000285 1.7e-08 64.3 73 56.2
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 8.3e-08 62.0 118 39.0
Cfa024020 Carpinus fangiana HOM05D003314 ORTHO05D004164 1.9e-07 60.8 47 59.6
Haze_27150 Corylus avellana HOM05D003314 ORTHO05D004164 1.9e-07 60.8 39 69.2
Cfa025454 Carpinus fangiana HOM05D003314 ORTHO05D004164 1.6e-06 57.8 45 57.8
HanXRQChr16g0518361 Helianthus annuus HOM05D003314 ORTHO05D004164 3.5e-06 56.6 126 38.1


User provided reference genes

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