Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_30928 Sequoiadendron giganteum HOM05D002079 ORTHO05D002437 1.4e-156 556.2 279 100.0
ATR0772G176 Amborella trichopoda HOM05D002079 ORTHO05D002437 1.2e-43 181.0 267 45.3
FAN02G2352 Fragaria x ananassa HOM05D002079 ORTHO05D002437 1.2e-43 181.0 270 46.3
FAN09G3835 Fragaria x ananassa HOM05D002079 ORTHO05D002437 2.8e-43 179.9 275 44.7
RcHm_v2.0_Chr3g0475941 Rosa chinensis HOM05D002079 ORTHO05D002437 2.8e-43 179.9 272 46.0
FAN05G1251 Fragaria x ananassa HOM05D002079 ORTHO05D002437 8.0e-43 178.3 265 45.3
FAN05G5008 Fragaria x ananassa HOM05D002079 ORTHO05D002437 8.0e-43 178.3 265 45.3
FvH4_6g20320 Fragaria vesca HOM05D002079 ORTHO05D002437 3.0e-42 176.4 265 44.5
FAN14G2006 Fragaria x ananassa HOM05D002079 ORTHO05D002437 3.0e-42 176.4 265 44.5
Prupe.7G094500 Prunus persica HOM05D002079 ORTHO05D002437 4.0e-42 176.0 274 43.8
Nn6g34687 Nelumbo nucifera HOM05D002079 ORTHO05D002437 6.8e-42 175.3 279 43.7
MD12G1040400 Malus domestica HOM05D002079 ORTHO05D002437 1.2e-41 174.5 278 43.9
QL07p036689 Quercus lobata HOM05D002079 ORTHO05D002437 2.0e-41 173.7 277 42.6
Ah.02g115430 Amaranthus hybridus HOM05D002079 ORTHO05D002437 2.6e-41 173.3 264 44.3
CSS0050433 Camellia sinensis var. sinensis HOM05D002079 ORTHO05D002437 7.5e-41 171.8 275 40.7
CANSAT64G0572 Cannabis sativa HOM05D002079 ORTHO05D002437 7.5e-41 171.8 275 42.5
Potri.016G070200 Populus trichocarpa HOM05D002079 ORTHO05D002437 9.8e-41 171.4 275 40.7
PGR004G0448 Punica granatum HOM05D002079 ORTHO05D002437 1.3e-40 171.0 275 42.5
Ah.12g059240 Amaranthus hybridus HOM05D002079 ORTHO05D002437 1.7e-40 170.6 263 43.3
arahy.Tifrunner.gnm1.ann1.6KTC2K Arachis hypogaea HOM05D002079 ORTHO05D002437 1.7e-40 170.6 273 41.8
arahy.Tifrunner.gnm1.ann1.BGF2TK Arachis hypogaea HOM05D002079 ORTHO05D002437 1.7e-40 170.6 273 41.8
MD14G1039100 Malus domestica HOM05D002079 ORTHO05D002437 1.7e-40 170.6 274 43.4
Aqoxy1G00656 Aquilegia oxysepala HOM05D002079 ORTHO05D002437 2.2e-40 170.2 264 43.6
Manes.08G033700 Manihot esculenta HOM05D002079 ORTHO05D002437 2.2e-40 170.2 267 43.1
THA.LOC104816623 Tarenaya hassleriana HOM05D002079 ORTHO05D002437 2.8e-40 169.9 265 41.9
TAR636G1759 Trochodendron aralioides HOM05D002079 ORTHO05D002437 3.7e-40 169.5 261 44.1
MBI17_g28778_MAGBIO Magnolia biondii HOM05D002079 ORTHO05D002437 4.9e-40 169.1 275 39.3
Dinv31760 Davidia involucrata HOM05D002079 ORTHO05D002437 6.3e-40 168.7 267 41.2
Cpa.g.sc104.30 Carica papaya HOM05D002079 ORTHO05D002437 1.1e-39 167.9 272 41.5
Potri.006G203200 Populus trichocarpa HOM05D002079 ORTHO05D002437 1.4e-39 167.5 278 39.9
Hma1.2p1_0079F.1_g041820 Hydrangea macrophylla HOM05D002079 ORTHO05D002437 1.8e-39 167.2 269 42.8
ClCG01G015020 Citrullus lanatus HOM05D002079 ORTHO05D002437 2.4e-39 166.8 266 42.9
AUR62036377 Chenopodium quinoa HOM05D002079 ORTHO05D002437 3.1e-39 166.4 267 42.7
ECA248G3162 Erigeron canadensis HOM05D002079 ORTHO05D002437 3.1e-39 166.4 267 43.1
Lalb_Chr20g0111361 Lupinus albus HOM05D002079 ORTHO05D002437 3.1e-39 166.4 261 42.1
PSO384G1841 Papaver somniferum HOM05D002079 ORTHO05D002437 3.1e-39 166.4 265 42.3
AUR62030739 Chenopodium quinoa HOM05D002079 ORTHO05D002437 4.1e-39 166.0 267 42.7
DCAR_020702 Daucus carota HOM05D002079 ORTHO05D002437 4.1e-39 166.0 269 41.3
Aa31LG3G5090 Aethionema arabicum HOM05D002079 ORTHO05D002437 5.4e-39 165.6 266 39.5
Medtr7g106250 Medicago truncatula HOM05D002079 ORTHO05D002437 5.4e-39 165.6 269 41.6
CDE06G1521 Ceratophyllum demersum HOM05D002079 ORTHO05D002437 7.0e-39 165.2 264 41.7
Ca_09057_v3 Cicer arietinum L. HOM05D002079 ORTHO05D002437 7.0e-39 165.2 272 41.5
TWI74G0530 Tripterygium wilfordii HOM05D002079 ORTHO05D002437 7.0e-39 165.2 275 42.2
Actinidia03888 Actinidia chinensis HOM05D002079 ORTHO05D002437 9.2e-39 164.9 266 38.7
Actinidia03998 Actinidia chinensis HOM05D002079 ORTHO05D002437 9.2e-39 164.9 266 38.7
VMungo1383G0583 Vigna mungo HOM05D002079 ORTHO05D002437 9.2e-39 164.9 269 41.6
PSO339G0696 Papaver somniferum HOM05D002079 ORTHO05D002437 1.6e-38 164.1 265 41.9
Hund10873 Selenicereus undatus HOM05D002079 ORTHO05D002437 1.6e-38 164.1 261 42.1
AT3G11670 Arabidopsis thaliana HOM05D002079 ORTHO05D002437 2.7e-38 163.3 264 39.8
CsaV3_6G041120 Cucumis sativus L. HOM05D002079 ORTHO05D002437 2.7e-38 163.3 265 42.3
AL222U10020 Arabidopsis lyrata HOM05D002079 ORTHO05D002437 3.5e-38 162.9 264 40.9
MELO3C024587.2 Cucumis melo HOM05D002079 ORTHO05D002437 3.5e-38 162.9 265 42.3
Lj1C1053G4 Lonicera japonica HOM05D002079 ORTHO05D002437 5.9e-38 162.2 266 39.8
Phvul.001G195600 Phaseolus vulgaris HOM05D002079 ORTHO05D002437 5.9e-38 162.2 269 41.6
Glyma.03G202100 Glycine max HOM05D002079 ORTHO05D002437 7.8e-38 161.8 270 41.5
Glyma.19G200000 Glycine max HOM05D002079 ORTHO05D002437 7.8e-38 161.8 269 40.5
Lj1g0024724 Lotus japonicus HOM05D002079 ORTHO05D002437 7.8e-38 161.8 272 41.5
AL3G23220 Arabidopsis lyrata HOM05D002079 ORTHO05D002437 1.0e-37 161.4 264 40.9
Manes.09G045300 Manihot esculenta HOM05D002079 ORTHO05D002437 1.0e-37 161.4 265 41.9
vmacro07477 Vaccinium macrocarpon HOM05D002079 ORTHO05D002437 1.3e-37 161.0 267 40.8
BolC5t34288H Brassica oleracea HOM05D002079 ORTHO05D002437 2.3e-37 160.2 264 38.6
EL10Ac5g12969 Beta vulgaris HOM05D002079 ORTHO05D002437 2.9e-37 159.8 294 40.5
TPR.G35560 Trifolium pratense HOM05D002079 ORTHO05D002437 2.9e-37 159.8 269 41.3
Cfa020030 Carpinus fangiana HOM05D002079 ORTHO05D002437 6.6e-37 158.7 269 42.0
Sed0003834 Sechium edule HOM05D002079 ORTHO05D002437 8.6e-37 158.3 264 41.3
Sc22g0002880 Simmondsia chinensis HOM05D002079 ORTHO05D002437 8.6e-37 158.3 274 41.6
HanXRQChr11g0347041 Helianthus annuus HOM05D002079 ORTHO05D002437 3.3e-36 156.4 268 41.0
Thecc.05G104500 Theobroma cacao HOM05D002079 ORTHO05D002437 4.3e-36 156.0 269 39.0
TWI77G0972 Tripterygium wilfordii HOM05D002079 ORTHO05D002437 4.3e-36 156.0 265 41.5
BcaB06g25594 Brassica carinata HOM05D002079 ORTHO05D002437 1.2e-35 154.5 265 38.1
Ciclev10011110m.g Citrus clementina HOM05D002079 ORTHO05D002437 3.6e-35 152.9 274 38.0
Gohir.A01G201300 Gossypium hirsutum HOM05D002079 ORTHO05D002437 3.6e-35 152.9 261 39.8
Gohir.D01G191200 Gossypium hirsutum HOM05D002079 ORTHO05D002437 3.6e-35 152.9 261 39.8
Sabra06G0156400 Salix brachista HOM05D002079 ORTHO05D002437 3.6e-35 152.9 293 37.9
BcaC05g29343 Brassica carinata HOM05D002079 ORTHO05D002437 8.0e-35 151.8 264 36.7
A05p37670 Brassica napus HOM05D002079 ORTHO05D002437 8.0e-35 151.8 265 36.6
BraA05t22563Z Brassica rapa HOM05D002079 ORTHO05D002437 8.0e-35 151.8 265 36.6
C05p56250 Brassica napus HOM05D002079 ORTHO05D002437 2.3e-34 150.2 264 36.4
Gorai.002G235100 Gossypium raimondii HOM05D002079 ORTHO05D002437 3.0e-34 149.8 261 39.5
Actinidia37747 Actinidia chinensis HOM05D002079 ORTHO05D002437 6.8e-34 148.7 271 36.5
Atru.chr8.1359 Acer truncatum HOM05D002079 ORTHO05D002437 8.9e-34 148.3 274 36.9
Rhsim03G0064600 Rhododendron simsii HOM05D002079 ORTHO05D002437 1.2e-33 147.9 267 40.1
COL.COLO4_29572 Corchorus olitorius HOM05D002079 ORTHO05D002437 1.5e-33 147.5 265 38.1
Duzib093G1055 Durio zibethinus HOM05D002079 ORTHO05D002437 3.4e-33 146.4 270 38.5
Lalb_Chr25g0287991 Lupinus albus HOM05D002079 ORTHO05D002437 5.7e-33 145.6 255 40.0
SGA_v2.0_scaffold13G06640 Striga asiatica HOM05D002079 ORTHO05D002437 5.7e-33 145.6 278 38.8
Hund14952 Selenicereus undatus HOM05D002079 ORTHO05D002437 1.7e-32 144.1 263 39.9
Migut.J00701 Erythranthe guttata HOM05D002079 ORTHO05D002437 2.2e-32 143.7 267 38.2
Ah.12g059220 Amaranthus hybridus HOM05D002079 ORTHO05D002437 2.9e-32 143.3 269 39.8
Nitab4.5_0002844g0060 Nicotiana tabacum HOM05D002079 ORTHO05D002437 2.9e-32 143.3 273 37.4
Lsat_1_v5_gn_1_58180 Lactuca sativa HOM05D002079 ORTHO05D002437 6.4e-32 142.1 278 36.0
Nitab4.5_0005037g0010 Nicotiana tabacum HOM05D002079 ORTHO05D002437 8.3e-32 141.7 273 36.3
Duzib106G1935 Durio zibethinus HOM05D002079 ORTHO05D002437 2.4e-31 140.2 268 36.9
Gohir.D11G333000 Gossypium hirsutum HOM05D002079 ORTHO05D002437 2.4e-31 140.2 271 36.9
Gorai.007G364000 Gossypium raimondii HOM05D002079 ORTHO05D002437 2.4e-31 140.2 271 36.9
SMO352G0057 Selaginella moellendorffii HOM05D002079 ORTHO05D002437 4.1e-31 139.4 283 35.3
Gohir.A11G315800 Gossypium hirsutum HOM05D002079 ORTHO05D002437 5.4e-31 139.0 270 37.0
Cc06_g06570 Coffea canephora HOM05D002079 ORTHO05D002437 7.0e-31 138.7 272 38.2
PGSC0003DMG400028233 Solanum tuberosum HOM05D002079 ORTHO05D002437 2.7e-30 136.7 268 36.9
Thhalv10020090m.g Eutrema salsugineum HOM05D002079 ORTHO05D002437 4.6e-30 136.0 264 37.1
Oeu028641.1 Olea europaea HOM05D002079 ORTHO05D002437 4.6e-30 136.0 266 37.2
Carub.0003s1099 Capsella rubella HOM05D002079 ORTHO05D002437 5.9e-30 135.6 264 36.7
CARHR086220 Cardamine hirsuta HOM05D002079 ORTHO05D002437 5.9e-30 135.6 264 36.4
Sopen10g032410 Solanum pennellii HOM05D002079 ORTHO05D002437 5.9e-30 135.6 268 36.6
unitig_744.g24708 Utricularia gibba HOM05D002079 ORTHO05D002437 1.0e-29 134.8 270 36.7
Sp3g09900 Schrenkiella parvula HOM05D002079 ORTHO05D002437 3.9e-29 132.9 264 36.4
Nitab4.5_0005513g0050 Nicotiana tabacum HOM05D002079 ORTHO05D002437 6.6e-29 132.1 269 34.9
MSTRG.19308 Avicennia marina HOM05D002079 ORTHO05D002437 8.6e-29 131.7 267 35.6
Nitab4.5_0004452g0030 Nicotiana tabacum HOM05D002079 ORTHO05D002437 4.3e-28 129.4 269 34.9
PGSC0003DMG400021322 Solanum tuberosum HOM05D002079 ORTHO05D002437 5.6e-28 129.0 277 33.2
Haze_20183 Corylus avellana HOM05D002079 ORTHO05D002437 7.3e-28 128.6 253 39.1
Peaxi162Scf00211g00058 Petunia axillaris HOM05D002079 ORTHO05D002437 1.1e-26 124.8 270 35.6
Zm00001eb243060 Zea mays HOM05D002079 ORTHO05D002437 1.1e-26 124.8 270 35.2
Peaxi162Scf00086g01511 Petunia axillaris HOM05D002079 ORTHO05D002437 2.3e-26 123.6 269 35.3
Sopen01g003080 Solanum pennellii HOM05D002079 ORTHO05D002437 2.0e-25 120.6 272 33.5
TAR623G1213 Trochodendron aralioides HOM05D002079 ORTHO05D002437 1.3e-24 117.9 224 37.5
Solyc01g007100.3 Solanum lycopersicum HOM05D002079 ORTHO05D002437 4.9e-24 115.9 272 33.1
Pp3c20_1800 Physcomitrium patens HOM05D002079 ORTHO05D002437 7.0e-23 112.1 299 31.8
CAN.G574.15 Capsicum annuum HOM05D002079 ORTHO05D002437 1.3e-21 107.8 270 30.7
Mapoly0092s0015 Marchantia polymorpha HOM05D002079 ORTHO05D002437 3.0e-21 106.7 310 31.9
HanXRQChr13g0398391 Helianthus annuus HOM05D002079 ORTHO05D002437 3.9e-21 106.3 261 33.0
CDE08G1621 Ceratophyllum demersum HOM05D002079 ORTHO05D002437 8.6e-21 105.1 133 43.6
Pp3c23_20240 Physcomitrium patens HOM05D002079 ORTHO05D002437 2.5e-20 103.6 300 29.7
Zm00001eb083520 Zea mays HOM05D002079 ORTHO05D002437 9.5e-20 101.7 273 32.2
HPP92_027177 Vanilla planifolia HOM05D002079 ORTHO05D002437 4.7e-19 99.4 243 34.6
Os02g0539100 Oryza sativa ssp. japonica HOM05D002079 ORTHO05D002437 1.4e-18 97.8 270 30.7
Lj5g0023694 Lotus japonicus HOM05D002079 ORTHO05D002437 5.2e-18 95.9 266 32.3
Lalb_Chr02g0154461 Lupinus albus HOM05D002079 ORTHO05D002437 3.5e-14 83.2 228 32.9
CAN.G1245.1 Capsicum annuum HOM05D002079 ORTHO05D002437 4.6e-14 82.8 272 27.9
GSVIVG01011149001 Vitis vinifera HOM05D002079 ORTHO05D002437 1.0e-13 81.6 88 51.1
QL03p035403 Quercus lobata HOM05D002079 ORTHO05D002437 1.1e-12 78.2 142 39.4
SEGI_09524 Sequoiadendron giganteum HOM05D002079 ORTHO05D002437 3.3e-12 76.6 266 26.7
Pp3c11_19410 Physcomitrium patens HOM05D002079 ORTHO05D002437 1.2e-11 74.7 279 30.8
Eucgr.A02590 Eucalyptus grandis HOM05D002079 ORTHO05D002437 1.1e-10 71.6 82 45.1
arahy.Tifrunner.gnm1.ann1.BQ87IR Arachis hypogaea HOM05D002079 ORTHO05D002437 1.4e-10 71.2 77 45.5
arahy.Tifrunner.gnm1.ann1.NCJ8FH Arachis hypogaea HOM05D002079 ORTHO05D002437 1.4e-10 71.2 77 45.5
Medtr1g057700 Medicago truncatula HOM05D002079 ORTHO05D002437 1.8e-10 70.9 215 30.7
Os11g0158400 Oryza sativa ssp. japonica HOM05D002079 ORTHO05D002437 3.1e-10 70.1 87 41.4
Zm00001eb202120 Zea mays HOM05D002079 ORTHO05D002437 5.2e-10 69.3 87 41.4
Ca_11697_v3 Cicer arietinum L. HOM05D002079 ORTHO05D002437 2.0e-09 67.4 215 30.7
Pp3c7_3610 Physcomitrium patens HOM05D002079 ORTHO05D002437 9.9e-09 65.1 278 27.3
arahy.Tifrunner.gnm1.ann1.S3CVLX Arachis hypogaea HOM05D002079 ORTHO05D007614 8.4e-08 62.0 144 34.0
Mapoly0019s0064 Marchantia polymorpha HOM05D002079 ORTHO05D002437 2.4e-07 60.5 107 38.3


User provided reference genes

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