Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_30902 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 3.3e-268 927.9 508 100.0
MBI05_g08285_MAGBIO Magnolia biondii HOM05D006541 ORTHO05D008471 2.0e-92 344.0 416 48.6
Nn4g23149 Nelumbo nucifera HOM05D006541 ORTHO05D008471 1.4e-90 337.8 384 50.8
Aqoxy3G03367 Aquilegia oxysepala HOM05D006541 ORTHO05D008471 4.6e-89 332.8 367 52.3
PSO063G0566 Papaver somniferum HOM05D006541 ORTHO05D008471 2.3e-88 330.5 437 48.1
TAR371G1054 Trochodendron aralioides HOM05D006541 ORTHO05D008471 2.3e-88 330.5 341 54.8
ClCG04G012330 Citrullus lanatus HOM05D006541 ORTHO05D008471 1.5e-87 327.8 384 49.2
Cfa018953 Carpinus fangiana HOM05D006541 ORTHO05D008471 2.5e-87 327.0 373 51.7
Haze_07335 Corylus avellana HOM05D006541 ORTHO05D008471 2.5e-87 327.0 391 50.6
Dinv38701 Davidia involucrata HOM05D006541 ORTHO05D008471 3.3e-87 326.6 368 50.5
QL10p016702 Quercus lobata HOM05D006541 ORTHO05D008471 2.1e-86 323.9 372 50.5
GSVIVG01008019001 Vitis vinifera HOM05D006541 ORTHO05D008471 2.8e-86 323.6 362 49.4
TAR629G1448 Trochodendron aralioides HOM05D006541 ORTHO05D008471 4.0e-85 319.7 341 53.7
Psat4g051480 Pisum sativum HOM05D006541 ORTHO05D008471 9.0e-85 318.5 344 51.5
Phvul.003G190700 Phaseolus vulgaris HOM05D006541 ORTHO05D008471 2.0e-84 317.4 343 52.2
CiPaw.11G043400 Carya illinoinensis HOM05D006541 ORTHO05D008471 5.8e-84 315.8 335 53.1
VMungo1215G1397 Vigna mungo HOM05D006541 ORTHO05D008471 5.8e-84 315.8 344 51.2
Glyma.17G099300 Glycine max HOM05D006541 ORTHO05D008471 2.2e-83 313.9 346 51.7
Medtr4g108590 Medicago truncatula HOM05D006541 ORTHO05D008471 2.9e-83 313.5 370 49.2
Sed0004898 Sechium edule HOM05D006541 ORTHO05D008471 2.9e-83 313.5 339 51.3
HPP92_016797 Vanilla planifolia HOM05D006541 ORTHO05D008471 5.0e-83 312.8 404 48.3
MELO3C001974.2 Cucumis melo HOM05D006541 ORTHO05D008471 6.5e-83 312.4 345 50.7
Atru.chr9.2260 Acer truncatum HOM05D006541 ORTHO05D008471 1.4e-82 311.2 350 51.7
Duzib205G0457 Durio zibethinus HOM05D006541 ORTHO05D008471 1.4e-82 311.2 346 50.3
Ca_21826_v3 Cicer arietinum L. HOM05D006541 ORTHO05D008471 1.9e-82 310.8 368 48.9
Ciclev10020397m.g Citrus clementina HOM05D006541 ORTHO05D008471 1.9e-82 310.8 360 49.4
Hma1.2p1_0104F.1_g049970 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 2.5e-82 310.5 336 53.3
arahy.Tifrunner.gnm1.ann1.84ES4F Arachis hypogaea HOM05D006541 ORTHO05D008471 3.2e-82 310.1 345 49.9
CsaV3_1G005390 Cucumis sativus L. HOM05D006541 ORTHO05D008471 3.2e-82 310.1 345 50.1
CDE06G2127 Ceratophyllum demersum HOM05D006541 ORTHO05D008471 5.5e-82 309.3 345 49.6
HPP92_016827 Vanilla planifolia HOM05D006541 ORTHO05D008471 7.1e-82 308.9 404 48.0
arahy.Tifrunner.gnm1.ann1.ZY6HCY Arachis hypogaea HOM05D006541 ORTHO05D008471 9.3e-82 308.5 345 49.9
Lalb_Chr07g0178001 Lupinus albus HOM05D006541 ORTHO05D008471 1.2e-81 308.1 343 49.0
Cpa.g.c35819 Carica papaya HOM05D006541 ORTHO05D008471 1.6e-81 307.8 362 50.6
Lj5A111T86 Lonicera japonica HOM05D006541 ORTHO05D008471 1.6e-81 307.8 336 52.1
Gohir.A03G066400 Gossypium hirsutum HOM05D006541 ORTHO05D008471 4.6e-81 306.2 392 45.4
Eucgr.B00491 Eucalyptus grandis HOM05D006541 ORTHO05D008471 3.9e-80 303.1 376 47.6
ATR0598G034 Amborella trichopoda HOM05D006541 ORTHO05D008471 6.7e-80 302.4 352 50.9
Lj4g0004556 Lotus japonicus HOM05D006541 ORTHO05D008471 6.7e-80 302.4 338 48.5
Prupe.5G192200 Prunus persica HOM05D006541 ORTHO05D008471 6.7e-80 302.4 337 48.7
Cc04_g16740 Coffea canephora HOM05D006541 ORTHO05D008471 1.9e-79 300.8 396 45.7
Thecc.03G085100 Theobroma cacao HOM05D006541 ORTHO05D008471 1.9e-79 300.8 345 49.0
HanXRQChr02g0041061 Helianthus annuus HOM05D006541 ORTHO05D008471 5.7e-79 299.3 343 49.9
TPR.G34732 Trifolium pratense HOM05D006541 ORTHO05D008471 7.4e-79 298.9 382 46.3
PGR083G1696 Punica granatum HOM05D006541 ORTHO05D008471 9.7e-79 298.5 335 49.3
Rhsim08G0155500 Rhododendron simsii HOM05D006541 ORTHO05D008471 1.3e-78 298.1 315 52.4
RcHm_v2.0_Chr7g0181151 Rosa chinensis HOM05D006541 ORTHO05D008471 2.8e-78 297.0 411 44.0
Hund02657 Selenicereus undatus HOM05D006541 ORTHO05D008471 3.7e-78 296.6 375 48.3
MD14G1199100 Malus domestica HOM05D006541 ORTHO05D008471 1.1e-77 295.0 339 48.7
THA.LOC104821445 Tarenaya hassleriana HOM05D006541 ORTHO05D008471 3.1e-77 293.5 345 49.9
CARHR156290 Cardamine hirsuta HOM05D006541 ORTHO05D008471 4.1e-77 293.1 353 49.9
TWI60G0844 Tripterygium wilfordii HOM05D006541 ORTHO05D008471 4.1e-77 293.1 348 49.4
Lsat_1_v5_gn_1_13281 Lactuca sativa HOM05D006541 ORTHO05D008471 5.3e-77 292.7 352 50.3
Manes.06G093400 Manihot esculenta HOM05D006541 ORTHO05D008471 5.3e-77 292.7 353 49.6
DCAR_016545 Daucus carota HOM05D006541 ORTHO05D008471 6.9e-77 292.4 343 49.9
BcaB01g00902 Brassica carinata HOM05D006541 ORTHO05D008471 1.2e-76 291.6 351 49.3
Thhalv10010423m.g Eutrema salsugineum HOM05D006541 ORTHO05D008471 2.0e-76 290.8 354 50.3
FAN18G0374 Fragaria x ananassa HOM05D006541 ORTHO05D008471 2.6e-76 290.4 371 46.6
CAN.G837.10 Capsicum annuum HOM05D006541 ORTHO05D008471 3.4e-76 290.0 389 46.5
BolC3t19470H Brassica oleracea HOM05D006541 ORTHO05D008471 4.5e-76 289.7 350 50.6
Nitab4.5_0000842g0050 Nicotiana tabacum HOM05D006541 ORTHO05D008471 4.5e-76 289.7 418 41.9
Gohir.D03G093000 Gossypium hirsutum HOM05D006541 ORTHO05D008471 5.9e-76 289.3 350 49.1
Carub.0005s1374 Capsella rubella HOM05D006541 ORTHO05D008471 7.7e-76 288.9 356 49.7
Gorai.003G096900 Gossypium raimondii HOM05D006541 ORTHO05D008471 1.3e-75 288.1 383 45.7
Hma1.2p1_0104F.1_g049980 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 1.7e-75 287.7 338 50.9
AUR62008395 Chenopodium quinoa HOM05D006541 ORTHO05D008471 2.2e-75 287.3 338 49.7
AUR62021701 Chenopodium quinoa HOM05D006541 ORTHO05D008471 2.2e-75 287.3 338 49.7
Sp5g14300 Schrenkiella parvula HOM05D006541 ORTHO05D008471 2.2e-75 287.3 352 50.0
AL5G26900 Arabidopsis lyrata HOM05D006541 ORTHO05D008471 3.8e-75 286.6 351 49.6
AT3G47610 Arabidopsis thaliana HOM05D006541 ORTHO05D008471 3.8e-75 286.6 351 49.6
FAN04G2599 Fragaria x ananassa HOM05D006541 ORTHO05D008471 3.8e-75 286.6 367 46.3
Oeu006508.1 Olea europaea HOM05D006541 ORTHO05D008471 3.8e-75 286.6 335 49.6
BcaC01g01798 Brassica carinata HOM05D006541 ORTHO05D008471 1.4e-74 284.6 350 50.0
C03p71820 Brassica napus HOM05D006541 ORTHO05D008471 1.4e-74 284.6 350 50.0
A06p20010 Brassica napus HOM05D006541 ORTHO05D008471 4.2e-74 283.1 350 50.0
BraA06t25087Z Brassica rapa HOM05D006541 ORTHO05D008471 4.2e-74 283.1 350 50.0
Nitab4.5_0012137g0020 Nicotiana tabacum HOM05D006541 ORTHO05D008471 5.5e-74 282.7 418 41.1
FvH4_5g15050 Fragaria vesca HOM05D006541 ORTHO05D008471 7.2e-74 282.3 371 46.1
FAN08G2919 Fragaria x ananassa HOM05D006541 ORTHO05D008471 7.2e-74 282.3 368 46.5
COL.COLO4_24520 Corchorus olitorius HOM05D000087 ORTHO05D008471 9.4e-74 282.0 345 47.2
Potri.012G068900 Populus trichocarpa HOM05D006541 ORTHO05D008471 9.4e-74 282.0 353 48.7
Actinidia37633 Actinidia chinensis HOM05D006541 ORTHO05D008471 1.6e-73 281.2 295 51.9
ECA247G0129 Erigeron canadensis HOM05D006541 ORTHO05D008471 2.7e-73 280.4 334 47.3
SGA_v2.0_scaffold25G10913 Striga asiatica HOM05D006541 ORTHO05D008471 7.9e-73 278.9 346 47.7
Solyc03g116140.3 Solanum lycopersicum HOM05D006541 ORTHO05D008471 2.3e-72 277.3 388 42.5
Sabra12G0049100 Salix brachista HOM05D006541 ORTHO05D008471 3.0e-72 276.9 415 44.1
MD06G1192400 Malus domestica HOM05D006541 ORTHO05D008471 1.5e-71 274.6 368 44.8
Peaxi162Scf00274g00732 Petunia axillaris HOM05D006541 ORTHO05D008471 2.5e-71 273.9 419 39.9
unitig_0.g2528 Utricularia gibba HOM05D006541 ORTHO05D008471 2.5e-71 273.9 339 46.0
Sopen03g035110 Solanum pennellii HOM05D006541 ORTHO05D008471 4.3e-71 273.1 388 42.0
EL10Ac5g10987 Beta vulgaris HOM05D006541 ORTHO05D008471 5.7e-71 272.7 338 46.2
Migut.I00173 Erythranthe guttata HOM05D006541 ORTHO05D008471 7.4e-71 272.3 334 47.6
Sc12g0006320 Simmondsia chinensis HOM05D006541 ORTHO05D008471 2.8e-70 270.4 359 46.0
BcaB05g23063 Brassica carinata HOM05D006541 ORTHO05D008471 1.4e-69 268.1 349 47.3
MSTRG.11386 Avicennia marina HOM05D006541 ORTHO05D008471 5.3e-69 266.2 388 43.3
PGSC0003DMG400019513 Solanum tuberosum HOM05D006541 ORTHO05D008471 5.3e-69 266.2 396 40.9
Ah.11g048540 Amaranthus hybridus HOM05D006541 ORTHO05D008471 7.7e-68 262.3 333 45.0
CSS0042048 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 1.0e-67 261.9 347 46.7
CSS0004518 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 1.1e-66 258.5 335 46.9
CANSAT25G3319 Cannabis sativa HOM05D006541 ORTHO05D008471 2.5e-66 257.3 384 41.7
Mapoly0060s0059 Marchantia polymorpha HOM05D006541 ORTHO05D003603 1.0e-64 251.9 399 41.9
Pp3c16_180 Physcomitrium patens HOM05D006541 ORTHO05D003603 4.4e-63 246.5 416 39.2
Pp3c16_188 Physcomitrium patens HOM05D006541 ORTHO05D003603 4.4e-63 246.5 416 39.2
AagrBONN_evm.TU.Sc2ySwM_228.4960 Anthoceros agrestis HOM05D006541 ORTHO05D008471 1.7e-59 234.6 395 38.5
Zm00001eb312480 Zea mays HOM05D006541 ORTHO05D008471 1.1e-58 231.9 258 48.8
Aa31LG4G16360 Aethionema arabicum HOM05D006541 ORTHO05D008471 5.5e-58 229.6 339 43.4
Potri.003G168100 Populus trichocarpa HOM05D006541 ORTHO05D008471 3.7e-54 216.9 157 68.2
vmacro17549 Vaccinium macrocarpon HOM05D006541 ORTHO05D008471 1.2e-52 211.8 200 58.5
Actinidia04898 Actinidia chinensis HOM05D006541 ORTHO05D008471 3.8e-43 180.3 204 49.0
CBR_g8828 Chara braunii HOM05D003341 ORTHO05D003603 2.1e-33 147.9 270 37.0
SEGI_16548 Sequoiadendron giganteum HOM05D003341 ORTHO05D003603 8.6e-27 125.9 397 30.2
Os09g0413100 Oryza sativa ssp. japonica HOM05D006541 ORTHO05D008471 1.2e-23 115.5 173 42.8
Actinidia04899 Actinidia chinensis HOM05D006541 ORTHO05D008471 1.3e-19 102.1 118 50.8
Cpa.g.sc111.3 Carica papaya HOM05D006541 ORTHO05D008471 1.5e-18 98.6 118 50.8
PRCOL_00002459 Prasinoderma coloniale HOM05D006541 ORTHO05D008471 7.5e-15 86.3 145 39.3
Sed0007979 Sechium edule HOM05D006541 ORTHO05D008471 2.9e-14 84.3 79 55.7
Cre09.g412350 Chlamydomonas reinhardtii HOM05D003341 ORTHO05D003603 5.4e-13 80.1 196 32.7
SEGI_38303 Sequoiadendron giganteum HOM05D002573 ORTHO05D002918 5.8e-07 60.1 63 87.3


User provided reference genes

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