Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 4.3e-125 451.4 247 100.0
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 3.5e-34 149.4 89 87.6
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 3.5e-34 149.4 89 87.6
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 9.9e-29 131.3 145 53.8
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 2.2e-28 130.2 149 51.0
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 2.9e-28 129.8 143 53.1
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 3.8e-28 129.4 151 52.3
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 3.8e-28 129.4 141 52.5
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 4.9e-28 129.0 145 53.8
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 4.9e-28 129.0 116 57.8
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 4.9e-28 129.0 116 57.8
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 4.9e-28 129.0 141 51.1
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 1.1e-27 127.9 107 62.6
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 1.4e-27 127.5 145 52.4
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 1.4e-27 127.5 110 61.8
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 2.4e-27 126.7 110 61.8
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 3.2e-27 126.3 140 50.0
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 4.2e-27 125.9 110 60.9
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 4.2e-27 125.9 142 50.7
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 4.2e-27 125.9 110 60.9
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 4.2e-27 125.9 145 51.0
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 5.5e-27 125.6 123 55.3
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 5.5e-27 125.6 123 55.3
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 5.5e-27 125.6 123 55.3
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 5.5e-27 125.6 123 55.3
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 5.5e-27 125.6 123 55.3
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 5.5e-27 125.6 110 60.9
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 5.5e-27 125.6 110 60.9
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 7.1e-27 125.2 123 55.3
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 7.1e-27 125.2 142 52.1
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 9.3e-27 124.8 142 51.4
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.2e-26 124.4 110 58.2
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 1.2e-26 124.4 110 59.1
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 1.6e-26 124.0 123 54.5
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 1.6e-26 124.0 131 55.0
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 1.6e-26 124.0 123 55.3
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 1.6e-26 124.0 111 59.5
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.6e-26 124.0 110 60.0
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.6e-26 124.0 110 60.0
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.6e-26 124.0 110 60.0
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 1.6e-26 124.0 110 60.0
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 2.1e-26 123.6 131 54.2
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 2.1e-26 123.6 110 59.1
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 2.1e-26 123.6 110 59.1
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 2.1e-26 123.6 110 60.0
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 2.1e-26 123.6 110 59.1
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 2.1e-26 123.6 115 57.4
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 2.1e-26 123.6 110 58.2
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 2.1e-26 123.6 110 58.2
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 2.7e-26 123.2 107 59.8
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 2.7e-26 123.2 110 59.1
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 2.7e-26 123.2 110 60.0
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 2.7e-26 123.2 110 59.1
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 3.5e-26 122.9 110 60.0
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 3.5e-26 122.9 110 60.0
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 3.5e-26 122.9 110 60.0
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 3.5e-26 122.9 110 60.0
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 3.5e-26 122.9 110 60.0
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 3.5e-26 122.9 110 58.2
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 3.5e-26 122.9 127 51.2
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 3.5e-26 122.9 110 59.1
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 3.5e-26 122.9 110 58.2
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 3.5e-26 122.9 110 60.0
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 3.5e-26 122.9 110 59.1
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 4.6e-26 122.5 110 58.2
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 4.6e-26 122.5 110 58.2
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 4.6e-26 122.5 110 59.1
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 4.6e-26 122.5 150 44.7
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 4.6e-26 122.5 110 60.0
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 6.0e-26 122.1 123 54.5
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 6.0e-26 122.1 123 54.5
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 6.0e-26 122.1 123 54.5
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 6.0e-26 122.1 123 54.5
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 6.0e-26 122.1 107 59.8
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 7.9e-26 121.7 146 47.3
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 7.9e-26 121.7 110 58.2
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 7.9e-26 121.7 110 59.1
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 7.9e-26 121.7 110 58.2
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 7.9e-26 121.7 148 49.3
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 1.0e-25 121.3 110 57.3
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 1.3e-25 120.9 123 53.7
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 1.3e-25 120.9 123 53.7
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 1.3e-25 120.9 110 59.1
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 1.8e-25 120.6 110 57.3
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 1.8e-25 120.6 110 56.4
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 1.8e-25 120.6 110 58.2
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 1.8e-25 120.6 110 57.3
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 1.8e-25 120.6 110 57.3
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 2.3e-25 120.2 110 56.4
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 3.9e-25 119.4 125 49.6
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 5.1e-25 119.0 110 58.2
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 6.7e-25 118.6 110 58.2
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 8.7e-25 118.2 115 53.9
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 8.7e-25 118.2 110 56.4
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 8.7e-25 118.2 110 56.4
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 8.7e-25 118.2 110 57.3
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.1e-24 117.9 136 47.8
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 1.1e-24 117.9 110 55.5
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 1.1e-24 117.9 110 56.4
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 1.5e-24 117.5 116 54.3
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 1.5e-24 117.5 110 55.5
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.9e-24 117.1 107 56.1
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.9e-24 117.1 136 47.8
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.9e-24 117.1 136 47.8
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 1.9e-24 117.1 110 55.5
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 2.5e-24 116.7 110 54.5
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 2.5e-24 116.7 111 55.0
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 2.5e-24 116.7 111 55.0
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 2.5e-24 116.7 117 54.7
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 2.5e-24 116.7 111 55.0
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 3.3e-24 116.3 110 55.5
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 4.3e-24 115.9 110 54.5
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 4.3e-24 115.9 110 54.5
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 5.6e-24 115.5 110 57.3
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 5.6e-24 115.5 110 52.7
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 7.4e-24 115.2 110 55.5
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 7.4e-24 115.2 111 54.1
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 1.6e-23 114.0 110 54.5
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 3.7e-23 112.8 141 46.1
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 4.8e-23 112.5 116 50.0
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 1.2e-21 107.8 133 47.4
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 1.2e-21 107.8 141 44.0
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 2.0e-21 107.1 98 58.2
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 2.6e-21 106.7 107 52.3
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 3.8e-20 102.8 107 52.3
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 3.2e-19 99.8 107 49.5
SEGI_15813 Sequoiadendron giganteum HOM05D000144 ORTHO05D023591 6.7e-17 92.0 47 91.5
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 1.1e-16 91.3 106 46.2
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 1.1e-16 91.3 110 45.5
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 6.1e-10 68.9 62 59.7
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 1.3e-09 67.8 62 59.7
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 8.7e-09 65.1 78 48.7
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 1.1e-08 64.7 60 55.0
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 2.5e-08 63.5 64 51.6
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 4.3e-08 62.8 51 56.9
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 3.7e-07 59.7 45 62.2
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 8.2e-07 58.5 58 51.7
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 1.4e-06 57.8 42 64.3
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 6.9e-06 55.5 45 60.0


User provided reference genes

Program Settings