Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_30082 Sequoiadendron giganteum HOM05D003390 ORTHO05D004189 1.1e-165 586.6 306 100.0
CDE08G1393 Ceratophyllum demersum HOM05D003390 ORTHO05D004189 1.2e-68 264.2 197 68.5
Cc09_g09610 Coffea canephora HOM05D003390 ORTHO05D004189 1.5e-66 257.3 197 64.0
Peaxi162Scf00121g02312 Petunia axillaris HOM05D003390 ORTHO05D004189 4.3e-66 255.8 195 65.1
ECA234G1186 Erigeron canadensis HOM05D003390 ORTHO05D004189 1.6e-65 253.8 199 64.3
DCAR_005073 Daucus carota HOM05D003390 ORTHO05D004189 2.8e-65 253.1 199 61.8
Prupe.4G074800 Prunus persica HOM05D003390 ORTHO05D004189 3.7e-65 252.7 197 64.5
Sopen02g005990 Solanum pennellii HOM05D003390 ORTHO05D004189 4.8e-65 252.3 197 63.5
Lj2A310T45 Lonicera japonica HOM05D003390 ORTHO05D004189 1.8e-64 250.4 200 63.0
PGSC0003DMG400003171 Solanum tuberosum HOM05D003390 ORTHO05D004189 1.8e-64 250.4 197 62.9
Haze_05526 Corylus avellana HOM05D003390 ORTHO05D004189 2.4e-64 250.0 197 62.9
Duzib192G0036 Durio zibethinus HOM05D003390 ORTHO05D004189 2.4e-64 250.0 197 60.9
PSO135G0210 Papaver somniferum HOM05D003390 ORTHO05D004189 2.4e-64 250.0 197 64.5
Sabra16G0232300 Salix brachista HOM05D003390 ORTHO05D004189 2.4e-64 250.0 195 62.1
PGR031G1555 Punica granatum HOM05D003390 ORTHO05D004189 3.1e-64 249.6 180 70.6
Thecc.06G156600 Theobroma cacao HOM05D003390 ORTHO05D004189 3.1e-64 249.6 197 61.9
Ciclev10014753m.g Citrus clementina HOM05D003390 ORTHO05D004189 5.3e-64 248.8 197 63.5
MBI07_g07829_MAGBIO Magnolia biondii HOM05D003390 ORTHO05D004189 5.3e-64 248.8 195 63.1
FAN16G0009 Fragaria x ananassa HOM05D003390 ORTHO05D004189 6.9e-64 248.4 197 62.9
Dinv30696 Davidia involucrata HOM05D003390 ORTHO05D004189 9.0e-64 248.1 197 63.5
Nitab4.5_0000206g0100 Nicotiana tabacum HOM05D003390 ORTHO05D004189 9.0e-64 248.1 197 62.4
Oeu001052.1 Olea europaea HOM05D003390 ORTHO05D004189 9.0e-64 248.1 197 64.0
Rhsim12G0071900 Rhododendron simsii HOM05D003390 ORTHO05D004189 9.0e-64 248.1 195 62.6
TAR386G0005 Trochodendron aralioides HOM05D003390 ORTHO05D004189 9.0e-64 248.1 199 63.8
TAR627G0573 Trochodendron aralioides HOM05D003390 ORTHO05D004189 9.0e-64 248.1 199 63.8
FvH4_3g06290 Fragaria vesca HOM05D003390 ORTHO05D004189 1.5e-63 247.3 197 62.9
FAN11G2053 Fragaria x ananassa HOM05D003390 ORTHO05D004189 1.5e-63 247.3 197 62.9
Potri.001G353000 Populus trichocarpa HOM05D003390 ORTHO05D004189 1.5e-63 247.3 197 61.4
Cfa000990 Carpinus fangiana HOM05D003390 ORTHO05D004189 2.0e-63 246.9 197 61.9
Manes.17G065600 Manihot esculenta HOM05D003390 ORTHO05D004189 2.0e-63 246.9 187 65.8
SalBow8G0013 Salvia bowleyana HOM05D003390 ORTHO05D002303 2.0e-63 246.9 197 61.9
Nitab4.5_0001826g0010 Nicotiana tabacum HOM05D003390 ORTHO05D004189 2.6e-63 246.5 197 62.4
SGA_v2.0_scaffold333G49014 Striga asiatica HOM05D003390 ORTHO05D004189 2.6e-63 246.5 197 60.9
ATR1131G058 Amborella trichopoda HOM05D003390 ORTHO05D004189 3.4e-63 246.1 198 64.6
Eucgr.D00339 Eucalyptus grandis HOM05D003390 ORTHO05D004189 3.4e-63 246.1 197 61.9
Gorai.010G239900 Gossypium raimondii HOM05D003390 ORTHO05D004189 4.5e-63 245.7 197 60.9
MD10G1266700 Malus domestica HOM05D003390 ORTHO05D004189 4.5e-63 245.7 197 60.9
MD16G1203400 Malus domestica HOM05D003390 ORTHO05D004189 4.5e-63 245.7 197 60.9
FAN21G1255 Fragaria x ananassa HOM05D003390 ORTHO05D004189 5.8e-63 245.4 197 61.9
MD05G1290900 Malus domestica HOM05D003390 ORTHO05D004189 1.0e-62 244.6 195 61.0
DCAR_013317 Daucus carota HOM05D003390 ORTHO05D004189 1.3e-62 244.2 195 63.6
Migut.M00950 Erythranthe guttata HOM05D003390 ORTHO05D004189 1.3e-62 244.2 198 62.1
Gohir.A06G198200 Gossypium hirsutum HOM05D003390 ORTHO05D004189 1.3e-62 244.2 195 61.0
RcHm_v2.0_Chr5g0013021 Rosa chinensis HOM05D003390 ORTHO05D004189 1.3e-62 244.2 197 62.4
Gohir.D06G205600 Gossypium hirsutum HOM05D003390 ORTHO05D004189 1.7e-62 243.8 195 61.0
Aqoxy1G01824 Aquilegia oxysepala HOM05D003390 ORTHO05D004189 2.2e-62 243.4 195 62.6
MSTRG.7463 Avicennia marina HOM05D003390 ORTHO05D004189 2.9e-62 243.0 180 67.8
Os01g0664100 Oryza sativa ssp. japonica HOM05D003390 ORTHO05D004189 2.9e-62 243.0 197 61.9
Cpa.g.sc17.128 Carica papaya HOM05D003390 ORTHO05D004189 6.5e-62 241.9 197 60.9
EL10Ac8g19781 Beta vulgaris HOM05D003390 ORTHO05D004189 8.4e-62 241.5 197 60.9
HanXRQChr16g0525801 Helianthus annuus HOM05D003390 ORTHO05D004189 8.4e-62 241.5 197 62.4
Psat1g170120 Pisum sativum HOM05D003390 ORTHO05D004189 1.1e-61 241.1 195 62.1
ClCG03G007130 Citrullus lanatus HOM05D003390 ORTHO05D004189 1.4e-61 240.7 197 59.9
FAN25G2602 Fragaria x ananassa HOM05D003390 ORTHO05D004189 1.4e-61 240.7 191 63.4
QL05p060163 Quercus lobata HOM05D003390 ORTHO05D004189 1.4e-61 240.7 197 60.9
TWI09G1133 Tripterygium wilfordii HOM05D003390 ORTHO05D004189 1.4e-61 240.7 197 60.4
HPP92_008023 Vanilla planifolia HOM05D003390 ORTHO05D004189 1.4e-61 240.7 191 62.8
VMungo0540G2227 Vigna mungo HOM05D003390 ORTHO05D004189 1.4e-61 240.7 195 62.1
AUR62027570 Chenopodium quinoa HOM05D003390 ORTHO05D004189 1.9e-61 240.4 195 60.5
THA.LOC104820634 Tarenaya hassleriana HOM05D003390 ORTHO05D004189 1.9e-61 240.4 170 70.6
AUR62035789 Chenopodium quinoa HOM05D003390 ORTHO05D004189 2.5e-61 240.0 195 60.0
MELO3C002711.2 Cucumis melo HOM05D003390 ORTHO05D004189 2.5e-61 240.0 197 59.4
GSVIVG01021390001 Vitis vinifera HOM05D003390 ORTHO05D004189 2.5e-61 240.0 197 60.4
Rhsim06G0115300 Rhododendron simsii HOM05D003390 ORTHO05D004189 5.5e-61 238.8 197 61.4
Sed0005552 Sechium edule HOM05D003390 ORTHO05D004189 5.5e-61 238.8 170 68.8
Aa31LG6G5840 Aethionema arabicum HOM05D003390 ORTHO05D004189 7.1e-61 238.4 170 69.4
Actinidia39555 Actinidia chinensis HOM05D003390 ORTHO05D004189 9.3e-61 238.0 197 61.9
Ah.09g232910 Amaranthus hybridus HOM05D003390 ORTHO05D004189 9.3e-61 238.0 196 61.2
CANSAT35G0642 Cannabis sativa HOM05D003390 ORTHO05D004189 1.2e-60 237.7 172 69.2
CiPaw.09G127400 Carya illinoinensis HOM05D003390 ORTHO05D004189 1.2e-60 237.7 197 60.4
SHI35740 Sapria himalayana HOM05D003390 ORTHO05D004189 2.1e-60 236.9 195 60.0
BcaB03g12182 Brassica carinata HOM05D003390 ORTHO05D004189 2.7e-60 236.5 170 68.8
Ca_11357_v3 Cicer arietinum L. HOM05D003390 ORTHO05D004189 2.7e-60 236.5 195 60.0
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 4.6e-60 235.7 170 68.2
C03p76240 Brassica napus HOM05D003390 ORTHO05D004189 4.6e-60 235.7 170 68.2
BolC3t19880H Brassica oleracea HOM05D003390 ORTHO05D004189 4.6e-60 235.7 170 68.2
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 4.6e-60 235.7 170 68.2
BcaC01g00142 Brassica carinata HOM05D003390 ORTHO05D004189 6.1e-60 235.3 170 67.6
Lj6g0006873 Lotus japonicus HOM05D003390 ORTHO05D004189 7.9e-60 235.0 195 61.0
Lalb_Chr18g0057721 Lupinus albus HOM05D003390 ORTHO05D004189 7.9e-60 235.0 197 60.4
AagrBONN_evm.TU.Sc2ySwM_228.3525 Anthoceros agrestis HOM05D003390 ORTHO05D004189 1.0e-59 234.6 171 67.8
CsaV3_1G032710 Cucumis sativus L. HOM05D003390 ORTHO05D004189 1.0e-59 234.6 170 67.1
Glyma.15G125900 Glycine max HOM05D003390 ORTHO05D004189 1.0e-59 234.6 195 60.0
Lj1A1183G65 Lonicera japonica HOM05D003390 ORTHO05D004189 1.3e-59 234.2 180 64.4
unitig_748.g7439 Utricularia gibba HOM05D003390 ORTHO05D004189 1.3e-59 234.2 186 66.1
AT1G29820 Arabidopsis thaliana HOM05D003390 ORTHO05D004189 1.8e-59 233.8 172 67.4
Sp1g25730 Schrenkiella parvula HOM05D003390 ORTHO05D004189 1.8e-59 233.8 170 67.6
AL1G43660 Arabidopsis lyrata HOM05D003390 ORTHO05D004189 3.9e-59 232.6 172 67.4
Phvul.006G132300 Phaseolus vulgaris HOM05D003390 ORTHO05D004189 6.7e-59 231.9 184 63.6
Hund21490 Selenicereus undatus HOM05D003390 ORTHO05D004189 6.7e-59 231.9 197 57.9
TPR.G17505 Trifolium pratense HOM05D003390 ORTHO05D004189 6.7e-59 231.9 195 61.0
vmacro12466 Vaccinium macrocarpon HOM05D003390 ORTHO05D004189 6.7e-59 231.9 197 60.9
Thhalv10007315m.g Eutrema salsugineum HOM05D003390 ORTHO05D004189 8.7e-59 231.5 170 66.5
Carub.0001s2807 Capsella rubella HOM05D003390 ORTHO05D004189 1.1e-58 231.1 172 66.3
Psat2g016080 Pisum sativum HOM05D003390 ORTHO05D004189 1.1e-58 231.1 168 70.2
CARHR029610 Cardamine hirsuta HOM05D003390 ORTHO05D004189 1.5e-58 230.7 170 66.5
TPR.G12521 Trifolium pratense HOM05D003390 ORTHO05D004189 2.5e-58 229.9 168 69.6
Eucgr.A01981 Eucalyptus grandis HOM05D003390 ORTHO05D004189 4.3e-58 229.2 168 69.0
CiPaw.09G127300 Carya illinoinensis HOM05D003390 ORTHO05D004189 5.7e-58 228.8 180 63.9
Thecc.01G163000 Theobroma cacao HOM05D003390 ORTHO05D004189 5.7e-58 228.8 198 61.1
arahy.Tifrunner.gnm1.ann1.QBP2NG Arachis hypogaea HOM05D003390 ORTHO05D004189 9.7e-58 228.0 168 67.9
Haze_13511 Corylus avellana HOM05D003390 ORTHO05D004189 1.3e-57 227.6 168 66.1
Lsat_1_v5_gn_0_8061 Lactuca sativa HOM05D003390 ORTHO05D004189 1.3e-57 227.6 180 64.4
LjContig00049g0028197 Lotus japonicus HOM05D003390 ORTHO05D004189 1.6e-57 227.3 168 69.0
TAR626G0692 Trochodendron aralioides HOM05D003390 ORTHO05D004189 1.6e-57 227.3 188 62.2
Medtr5g091570 Medicago truncatula HOM05D003390 ORTHO05D004189 2.2e-57 226.9 168 69.6
arahy.Tifrunner.gnm1.ann1.WT2YK3 Arachis hypogaea HOM05D003390 ORTHO05D004189 2.8e-57 226.5 175 65.1
RcHm_v2.0_Chr2g0151651 Rosa chinensis HOM05D003390 ORTHO05D004189 2.8e-57 226.5 168 67.3
Atru.chr6.2080 Acer truncatum HOM05D003390 ORTHO05D004189 3.7e-57 226.1 197 56.3
Migut.H02104 Erythranthe guttata HOM05D003390 ORTHO05D004189 3.7e-57 226.1 197 56.9
PGR042G1945 Punica granatum HOM05D003390 ORTHO05D004189 3.7e-57 226.1 197 59.4
arahy.Tifrunner.gnm1.ann1.VAF4MI Arachis hypogaea HOM05D003390 ORTHO05D004189 4.8e-57 225.7 191 60.2
arahy.Tifrunner.gnm1.ann1.0JHG5Q Arachis hypogaea HOM05D003390 ORTHO05D004189 6.3e-57 225.3 191 60.2
ECA232G3556 Erigeron canadensis HOM05D003390 ORTHO05D004189 6.3e-57 225.3 187 62.6
QL08p044424 Quercus lobata HOM05D003390 ORTHO05D004189 1.4e-56 224.2 195 57.4
Medtr2g028770 Medicago truncatula HOM05D003390 ORTHO05D004189 1.8e-56 223.8 178 63.5
CAN.G2018.1 Capsicum annuum HOM05D003390 ORTHO05D004189 2.4e-56 223.4 198 59.1
PGSC0003DMG400021242 Solanum tuberosum HOM05D003390 ORTHO05D004189 3.1e-56 223.0 197 57.4
Cc05_g09550 Coffea canephora HOM05D003390 ORTHO05D004189 4.1e-56 222.6 195 56.9
HanXRQChr05g0147821 Helianthus annuus HOM05D003390 ORTHO05D004189 4.1e-56 222.6 178 62.9
Solyc10g007740.3 Solanum lycopersicum HOM05D003390 ORTHO05D004189 4.1e-56 222.6 197 57.4
Lalb_Chr10g0106641 Lupinus albus HOM05D003390 ORTHO05D004189 5.3e-56 222.2 170 65.3
Prupe.3G173900 Prunus persica HOM05D003390 ORTHO05D004189 6.9e-56 221.9 168 66.7
Oeu020929.2 Olea europaea HOM05D003390 ORTHO05D004189 9.0e-56 221.5 173 64.2
Os01g0601000 Oryza sativa ssp. japonica HOM05D003390 ORTHO05D004189 9.0e-56 221.5 189 60.3
Lsat_1_v5_gn_4_29721 Lactuca sativa HOM05D003390 ORTHO05D004189 1.2e-55 221.1 199 58.8
Nitab4.5_0002209g0030 Nicotiana tabacum HOM05D003390 ORTHO05D004189 1.5e-55 220.7 197 56.9
Nitab4.5_0003104g0070 Nicotiana tabacum HOM05D003390 ORTHO05D004189 1.5e-55 220.7 202 55.9
Gorai.006G007900 Gossypium raimondii HOM05D003390 ORTHO05D004189 2.0e-55 220.3 199 59.8
Sopen10g003650 Solanum pennellii HOM05D003390 ORTHO05D004189 2.0e-55 220.3 197 56.9
Gohir.A09G007100 Gossypium hirsutum HOM05D003390 ORTHO05D004189 5.9e-55 218.8 199 59.3
Peaxi162Scf00035g02617 Petunia axillaris HOM05D003390 ORTHO05D004189 7.7e-55 218.4 197 56.9
Glyma.02G285600 Glycine max HOM05D003390 ORTHO05D004189 1.3e-54 217.6 180 63.3
Ca_06279_v3 Cicer arietinum L. HOM05D003390 ORTHO05D004189 5.0e-54 215.7 168 66.1
Ca_30614_v3 Cicer arietinum L. HOM05D003390 ORTHO05D004189 5.0e-54 215.7 168 66.1
SGA_v2.0_scaffold4G02117 Striga asiatica HOM05D003390 ORTHO05D004189 5.0e-54 215.7 191 58.1
Thhalv10016539m.g Eutrema salsugineum HOM05D003390 ORTHO05D004189 2.5e-53 213.4 168 63.1
Mapoly0130s0010 Marchantia polymorpha HOM05D003390 ORTHO05D004189 3.2e-53 213.0 180 63.9
SalBow7G4851 Salvia bowleyana HOM05D003390 ORTHO05D004189 4.2e-53 212.6 195 55.4
AL4G41580 Arabidopsis lyrata HOM05D003390 ORTHO05D004189 5.5e-53 212.2 168 63.1
Sp4g25080 Schrenkiella parvula HOM05D003390 ORTHO05D004189 5.5e-53 212.2 168 63.7
TPR.G17499 Trifolium pratense HOM05D003390 ORTHO05D004189 7.2e-53 211.8 199 53.8
CARHR138010 Cardamine hirsuta HOM05D003390 ORTHO05D004189 9.4e-53 211.5 168 61.9
BcaC02g07214 Brassica carinata HOM05D003390 ORTHO05D004189 1.2e-52 211.1 168 63.7
BNapus_Darmor_BZH_scaffold_64p00180 Brassica napus HOM05D003390 ORTHO05D004189 1.2e-52 211.1 168 63.7
BolC4t28499H Brassica oleracea HOM05D003390 ORTHO05D004189 1.2e-52 211.1 168 63.7
BraA04t18699Z Brassica rapa HOM05D003390 ORTHO05D004189 1.2e-52 211.1 168 63.7
BcaB06g29273 Brassica carinata HOM05D003390 ORTHO05D004189 1.6e-52 210.7 168 63.7
AT2G42950 Arabidopsis thaliana HOM05D003390 ORTHO05D004189 3.6e-52 209.5 168 62.5
Lj1A614G6 Lonicera japonica HOM05D003390 ORTHO05D004189 3.6e-52 209.5 202 55.9
C04p69990 Brassica napus HOM05D003390 ORTHO05D004189 1.0e-51 208.0 168 63.1
Carub.0004s2542 Capsella rubella HOM05D003390 ORTHO05D004189 2.3e-51 206.8 168 61.9
Aa31LG1G24700 Aethionema arabicum HOM05D003390 ORTHO05D004189 2.0e-50 203.8 195 54.4
Pp3c9_16960 Physcomitrium patens HOM05D003390 ORTHO05D004189 1.8e-48 197.2 192 54.7
Solyc02g021480.4 Solanum lycopersicum HOM05D003390 ORTHO05D004189 3.1e-48 196.4 155 62.6
AT1G29830 Arabidopsis thaliana HOM05D003390 ORTHO05D004189 5.3e-48 195.7 172 57.0
Pp3c9_12460 Physcomitrium patens HOM05D003390 ORTHO05D004189 1.9e-45 187.2 195 49.7
FAN19G1589 Fragaria x ananassa HOM05D003390 ORTHO05D004189 2.5e-45 186.8 191 55.0
LjContig00141g0021144 Lotus japonicus HOM05D003390 ORTHO05D004791 4.2e-45 186.0 173 60.1
FvH4_1g24850 Fragaria vesca HOM05D003390 ORTHO05D004189 5.5e-45 185.7 193 54.4
Pp3c15_4880 Physcomitrium patens HOM05D003390 ORTHO05D004189 1.4e-43 181.0 168 56.5
FAN26G2057 Fragaria x ananassa HOM05D003390 ORTHO05D004189 5.1e-43 179.1 178 56.2
Nn4g26479 Nelumbo nucifera HOM05D003390 ORTHO05D004189 1.2e-39 167.9 115 71.3
COL.COLO4_08451 Corchorus olitorius HOM05D003390 ORTHO05D004189 1.5e-39 167.5 199 48.7
FAN14G5098 Fragaria x ananassa HOM05D003390 ORTHO05D004189 3.5e-39 166.4 157 58.0
Eucgr.A01984 Eucalyptus grandis HOM05D003390 ORTHO05D004189 7.7e-39 165.2 172 55.8
FAN02G0419 Fragaria x ananassa HOM05D003390 ORTHO05D004189 5.5e-37 159.1 144 57.6
Gohir.D09G006300 Gossypium hirsutum HOM05D003390 ORTHO05D004189 3.0e-35 153.3 108 70.4
FAN09G2932 Fragaria x ananassa HOM05D003390 ORTHO05D004189 9.7e-34 148.3 156 52.6
COL.COLO4_07487 Corchorus olitorius HOM05D003390 ORTHO05D004189 2.8e-33 146.7 127 55.1
Prupe.4G074700 Prunus persica HOM05D003390 ORTHO05D004189 4.0e-27 126.3 119 52.1
MD17G1138500 Malus domestica HOM05D003390 ORTHO05D004189 2.6e-26 123.6 172 47.7
Eucgr.A01987 Eucalyptus grandis HOM05D003390 ORTHO05D004189 7.5e-26 122.1 105 58.1
Atru.chr10.1372 Acer truncatum HOM05D003390 ORTHO05D004189 8.3e-25 118.6 78 75.6
FvH4_6g38330 Fragaria vesca HOM05D003390 ORTHO05D004189 4.1e-24 116.3 96 63.5
Actinidia07674 Actinidia chinensis HOM05D003390 ORTHO05D004189 2.7e-23 113.6 107 61.7
PSO541G3465 Papaver somniferum HOM05D003390 ORTHO05D004189 7.7e-23 112.1 125 49.6
Cpa.g.sc50.94 Carica papaya HOM05D003390 ORTHO05D004189 3.4e-18 96.7 68 73.5
Glyma.14G028650 Glycine max HOM05D003390 ORTHO05D004189 2.5e-13 80.5 69 63.8
TPR.G31585 Trifolium pratense HOM05D003390 ORTHO05D004189 5.4e-08 62.8 64 43.8


User provided reference genes

Program Settings