Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_30001 Sequoiadendron giganteum HOM05D001208 ORTHO05D008075 6.8e-63 243.8 122 100.0
Oeu048915.2 Olea europaea HOM05D001208 ORTHO05D008075 6.9e-15 84.3 90 50.0
Gohir.A09G036500 Gossypium hirsutum HOM05D001208 ORTHO05D008075 2.2e-13 79.3 90 50.0
Nitab4.5_0010244g0020 Nicotiana tabacum HOM05D001208 ORTHO05D008075 6.4e-13 77.8 90 46.7
ECA238G0379 Erigeron canadensis HOM05D001208 ORTHO05D008075 1.9e-12 76.3 103 39.8
Gohir.D04G075500 Gossypium hirsutum HOM05D001208 ORTHO05D008075 1.9e-12 76.3 93 45.2
Gorai.001G273200 Gossypium raimondii HOM05D001208 ORTHO05D008075 1.9e-12 76.3 90 47.8
Gorai.012G085000 Gossypium raimondii HOM05D001208 ORTHO05D008075 1.9e-12 76.3 93 45.2
Thecc.04G039800 Theobroma cacao HOM05D001208 ORTHO05D008075 1.9e-12 76.3 90 47.8
CARHR074980 Cardamine hirsuta HOM05D001208 ORTHO05D008075 2.4e-12 75.9 89 46.1
Oeu063020.3 Olea europaea HOM05D000396 ORTHO05D000116 2.4e-12 75.9 89 46.1
Duzib147G0492 Durio zibethinus HOM05D001208 ORTHO05D008075 3.2e-12 75.5 90 46.7
Gohir.A05G336900 Gossypium hirsutum HOM05D001208 ORTHO05D008075 3.2e-12 75.5 88 44.3
Gohir.D09G037500 Gossypium hirsutum HOM05D001208 ORTHO05D008075 3.2e-12 75.5 90 47.8
Duzib264G1149 Durio zibethinus HOM05D001208 ORTHO05D008075 4.2e-12 75.1 108 40.7
Gohir.A07G230100 Gossypium hirsutum HOM05D001208 ORTHO05D008075 4.2e-12 75.1 90 46.7
Medtr1g007800 Medicago truncatula HOM05D001208 ORTHO05D008075 4.2e-12 75.1 83 47.0
Solyc07g047800.3 Solanum lycopersicum HOM05D001208 ORTHO05D008075 4.2e-12 75.1 90 46.7
vmacro05971 Vaccinium macrocarpon HOM05D001208 ORTHO05D008075 4.2e-12 75.1 90 46.7
Gohir.D07G237300 Gossypium hirsutum HOM05D001208 ORTHO05D008075 7.1e-12 74.3 90 46.7
Sopen07g024240 Solanum pennellii HOM05D001208 ORTHO05D008075 9.3e-12 73.9 90 45.6
EL10Ac6g15435 Beta vulgaris HOM05D001208 ORTHO05D008075 1.2e-11 73.6 89 47.2
Peaxi162Scf00776g00122 Petunia axillaris HOM05D001208 ORTHO05D008075 1.6e-11 73.2 90 45.6
TPR.G24529 Trifolium pratense HOM05D001208 ORTHO05D008075 1.6e-11 73.2 89 46.1
Cc07_g00990 Coffea canephora HOM05D001208 ORTHO05D008075 2.1e-11 72.8 108 40.7
Nitab4.5_0000441g0030 Nicotiana tabacum HOM05D001208 ORTHO05D008075 2.1e-11 72.8 89 44.9
ATR0561G256 Amborella trichopoda HOM05D001208 ORTHO05D008075 3.5e-11 72.0 89 48.3
PGSC0003DMG402006147 Solanum tuberosum HOM05D001208 ORTHO05D008075 3.5e-11 72.0 86 44.2
Lsat_1_v5_gn_2_94301 Lactuca sativa HOM05D001208 ORTHO05D008075 4.6e-11 71.6 87 43.7
CAN.G1397.5 Capsicum annuum HOM05D001208 ORTHO05D008075 6.0e-11 71.2 90 44.4
AUR62003424 Chenopodium quinoa HOM05D001208 ORTHO05D008075 7.9e-11 70.9 89 46.1
AUR62029417 Chenopodium quinoa HOM05D001208 ORTHO05D008075 7.9e-11 70.9 89 46.1
HanXRQChr07g0198141 Helianthus annuus HOM05D001208 ORTHO05D008075 1.0e-10 70.5 84 46.4
Psat6g035480 Pisum sativum HOM05D001208 ORTHO05D008075 1.3e-10 70.1 89 43.8
TWI32G0053 Tripterygium wilfordii HOM05D001208 ORTHO05D008075 1.3e-10 70.1 89 44.9
Ah.02g119870 Amaranthus hybridus HOM05D001208 ORTHO05D008075 1.8e-10 69.7 108 40.7
MSTRG.3068 Avicennia marina HOM05D001208 ORTHO05D008075 1.8e-10 69.7 89 46.1
Ca_12781_v3 Cicer arietinum L. HOM05D001208 ORTHO05D008075 1.8e-10 69.7 95 44.2
Gorai.006G042900 Gossypium raimondii HOM05D001208 ORTHO05D008075 1.8e-10 69.7 94 45.7
AT3G01980 Arabidopsis thaliana HOM05D001208 ORTHO05D008075 2.3e-10 69.3 89 41.6
MBI11_g05338_MAGBIO Magnolia biondii HOM05D001208 ORTHO05D008075 2.3e-10 69.3 85 47.1
GSVIVG01033062001 Vitis vinifera HOM05D001208 ORTHO05D008075 2.3e-10 69.3 90 46.7
Aa31LG5G11100 Aethionema arabicum HOM05D001208 ORTHO05D008075 3.0e-10 68.9 89 41.6
Hund07876 Selenicereus undatus HOM05D001208 ORTHO05D008075 3.0e-10 68.9 89 44.9
Actinidia36213 Actinidia chinensis HOM05D001208 ORTHO05D008075 3.9e-10 68.6 84 48.8
Dinv25650 Davidia involucrata HOM05D001208 ORTHO05D008075 3.9e-10 68.6 84 46.4
Migut.K01476 Erythranthe guttata HOM05D001208 ORTHO05D008075 3.9e-10 68.6 88 45.5
FAN02G0417 Fragaria x ananassa HOM05D001208 ORTHO05D008075 3.9e-10 68.6 84 46.4
Potri.001G327800 Populus trichocarpa HOM05D001208 ORTHO05D008075 3.9e-10 68.6 103 38.8
CDE04G2451 Ceratophyllum demersum HOM05D002771 ORTHO05D008075 5.1e-10 68.2 89 44.9
FAN09G2806 Fragaria x ananassa HOM05D001208 ORTHO05D008075 5.1e-10 68.2 84 46.4
Hma1.2p1_1057F.1_g252710 Hydrangea macrophylla HOM05D001208 ORTHO05D008075 6.7e-10 67.8 102 41.2
Manes.15G162700 Manihot esculenta HOM05D001208 ORTHO05D008075 6.7e-10 67.8 84 47.6
Sp3g00130 Schrenkiella parvula HOM05D001208 ORTHO05D008075 6.7e-10 67.8 89 40.4
C03p90990 Brassica napus HOM05D001208 ORTHO05D008075 8.7e-10 67.4 89 42.7
AL3G10110 Arabidopsis lyrata HOM05D001208 ORTHO05D008075 1.1e-09 67.0 89 42.7
CANSAT64G1291 Cannabis sativa HOM05D001208 ORTHO05D008075 1.1e-09 67.0 88 43.2
Nn4g22263 Nelumbo nucifera HOM05D001208 ORTHO05D008075 1.1e-09 67.0 84 45.2
RcHm_v2.0_Chr2g0175921 Rosa chinensis HOM05D001208 ORTHO05D008075 1.1e-09 67.0 104 38.5
Sc08g0005580 Simmondsia chinensis HOM05D001208 ORTHO05D008075 1.1e-09 67.0 93 44.1
Aqoxy5G03299 Aquilegia oxysepala HOM05D001208 ORTHO05D008075 1.5e-09 66.6 84 41.7
TAR629G0484 Trochodendron aralioides HOM05D001208 ORTHO05D008075 1.5e-09 66.6 89 47.2
Ciclev10016277m.g Citrus clementina HOM05D001208 ORTHO05D008075 1.9e-09 66.2 89 46.1
Lju41C54T2 Lonicera japonica HOM05D001208 ORTHO05D008075 1.9e-09 66.2 90 46.7
Prupe.3G308300 Prunus persica HOM05D001208 ORTHO05D008075 1.9e-09 66.2 104 37.5
THA.LOC104821132 Tarenaya hassleriana HOM05D001208 ORTHO05D008075 1.9e-09 66.2 89 42.7
CiPaw.04G039200 Carya illinoinensis HOM05D001208 ORTHO05D008075 2.5e-09 65.9 89 46.1
FvH4_6g53780 Fragaria vesca HOM05D001208 ORTHO05D008075 2.5e-09 65.9 84 44.0
FAN14G4456 Fragaria x ananassa HOM05D001208 ORTHO05D008075 3.3e-09 65.5 85 43.5
Aqoxy5G03300 Aquilegia oxysepala HOM05D001208 ORTHO05D008075 4.3e-09 65.1 90 38.9
Carub.0003s0011 Capsella rubella HOM05D001208 ORTHO05D008075 4.3e-09 65.1 86 39.5
CDE08G1580 Ceratophyllum demersum HOM05D001208 ORTHO05D008075 5.6e-09 64.7 89 42.7
FAN05G5470 Fragaria x ananassa HOM05D001208 ORTHO05D008075 5.6e-09 64.7 85 43.5
SGA_v2.0_scaffold44G16927 Striga asiatica HOM05D001208 ORTHO05D008075 5.6e-09 64.7 85 43.5
Cfa007210 Carpinus fangiana HOM05D001208 ORTHO05D008075 7.4e-09 64.3 89 44.9
Sed0020213 Sechium edule HOM05D001208 ORTHO05D008075 7.4e-09 64.3 84 46.4
BcaC01g01355 Brassica carinata HOM05D001208 ORTHO05D008075 1.3e-08 63.5 84 42.9
A08p01850 Brassica napus HOM05D001208 ORTHO05D008075 1.3e-08 63.5 84 42.9
BraA08t32237Z Brassica rapa HOM05D001208 ORTHO05D008075 1.3e-08 63.5 84 42.9
PSO478G2417 Papaver somniferum HOM05D001208 ORTHO05D008075 1.3e-08 63.5 93 38.7
Potri.017G067332 Populus trichocarpa HOM05D001208 ORTHO05D008075 1.3e-08 63.5 89 43.8
Cpa.g.sc70.122 Carica papaya HOM05D001208 ORTHO05D008075 1.6e-08 63.2 84 46.4
ClCG05G013650 Citrullus lanatus HOM05D001208 ORTHO05D008075 1.6e-08 63.2 90 42.2
ClCG05G013660 Citrullus lanatus HOM05D001208 ORTHO05D008075 1.6e-08 63.2 89 42.7
Eucgr.I01632 Eucalyptus grandis HOM05D001208 ORTHO05D008075 1.6e-08 63.2 85 45.9
PSO017G3242 Papaver somniferum HOM05D001208 ORTHO05D008075 1.6e-08 63.2 92 40.2
VMungo1215G3005 Vigna mungo HOM05D001208 ORTHO05D008075 1.6e-08 63.2 110 37.3
PGR142G2960 Punica granatum HOM05D001208 ORTHO05D008075 2.1e-08 62.8 97 42.3
Phvul.003G171900 Phaseolus vulgaris HOM05D001208 ORTHO05D008075 2.8e-08 62.4 110 37.3
HPP92_024288 Vanilla planifolia HOM05D001208 ORTHO05D008075 3.7e-08 62.0 89 41.6
BcaB04g17124 Brassica carinata HOM05D001208 ORTHO05D008075 4.8e-08 61.6 84 40.5
unitig_748.g7134 Utricularia gibba HOM05D001208 ORTHO05D008075 6.2e-08 61.2 89 37.1
MELO3C014897.2 Cucumis melo HOM05D001208 ORTHO05D008075 8.1e-08 60.8 84 42.9
Glyma.17G107900 Glycine max HOM05D001208 ORTHO05D008075 8.1e-08 60.8 95 41.1
MD17G1001600 Malus domestica HOM05D001208 ORTHO05D008075 8.1e-08 60.8 85 40.0
Sed0025366 Sechium edule HOM05D001208 ORTHO05D008075 8.1e-08 60.8 89 42.7
Lj1g0026775 Lotus japonicus HOM05D001208 ORTHO05D008075 1.1e-07 60.5 88 42.0
Thhalv10021329m.g Eutrema salsugineum HOM05D001208 ORTHO05D008075 1.8e-07 59.7 89 38.2
Lalb_Chr25g0281111 Lupinus albus HOM05D001208 ORTHO05D008075 1.8e-07 59.7 94 39.4
CsaV3_3G026900 Cucumis sativus L. HOM05D001208 ORTHO05D008075 2.4e-07 59.3 84 41.7
DCAR_021803 Daucus carota HOM05D001208 ORTHO05D008075 4.0e-07 58.5 86 43.0
Lalb_Chr25g0281101 Lupinus albus HOM05D001208 ORTHO05D008075 4.0e-07 58.5 94 39.4
HPP92_023386 Vanilla planifolia HOM05D001208 ORTHO05D008075 4.0e-07 58.5 89 37.1
Atru.chr1.2714 Acer truncatum HOM05D001208 ORTHO05D008075 5.3e-07 58.2 104 38.5
QL02p070951 Quercus lobata HOM05D001208 ORTHO05D008075 1.2e-06 57.0 85 44.7
QL02p070962 Quercus lobata HOM05D001208 ORTHO05D008075 1.2e-06 57.0 85 44.7
Peaxi162Scf01320g00002 Petunia axillaris HOM05D001208 ORTHO05D001593 1.5e-06 56.6 90 37.8
CARHR220170 Cardamine hirsuta HOM05D001208 ORTHO05D001593 3.4e-06 55.5 89 34.8
Lj1g0008529 Lotus japonicus HOM05D001208 ORTHO05D001593 4.5e-06 55.1 106 30.2
arahy.Tifrunner.gnm1.ann1.G86GHA Arachis hypogaea HOM05D001208 ORTHO05D008075 7.6e-06 54.3 95 40.0
Lalb_Chr01g0012901 Lupinus albus HOM05D001208 ORTHO05D001593 7.6e-06 54.3 116 26.7
PSO500G0273 Papaver somniferum HOM05D001208 ORTHO05D001593 1.0e-05 53.9 114 31.6
Psat6g128640 Pisum sativum HOM05D001208 ORTHO05D001593 1.0e-05 53.9 89 37.1
unitig_46.g18437 Utricularia gibba HOM05D001208 ORTHO05D001593 1.0e-05 53.9 95 35.8


User provided reference genes

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