Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 3.0e-218 761.5 382 100.0
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 5.9e-113 411.8 277 71.5
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 8.0e-110 401.4 318 63.2
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 8.8e-109 397.9 326 61.0
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 8.8e-109 397.9 314 61.8
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.1e-108 397.5 316 61.1
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 2.6e-108 396.4 316 60.4
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 7.4e-108 394.8 289 64.7
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 1.8e-106 390.2 289 64.0
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 2.4e-106 389.8 275 67.3
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 2.4e-106 389.8 279 67.0
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 2.4e-106 389.8 314 61.5
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 3.1e-106 389.4 312 61.5
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 4.1e-106 389.0 307 62.5
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 4.1e-106 389.0 307 62.9
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 5.3e-106 388.7 339 57.5
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 5.3e-106 388.7 301 62.8
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 5.3e-106 388.7 305 61.0
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 9.1e-106 387.9 292 65.1
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 1.2e-105 387.5 291 64.9
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 1.2e-105 387.5 279 66.7
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 1.2e-105 387.5 289 64.4
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 2.6e-105 386.3 289 64.0
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 3.5e-105 386.0 276 63.4
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 3.5e-105 386.0 321 60.4
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 4.5e-105 385.6 297 63.0
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 4.5e-105 385.6 302 62.6
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 5.9e-105 385.2 315 61.3
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 5.9e-105 385.2 275 65.5
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 7.7e-105 384.8 297 63.0
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 7.7e-105 384.8 283 65.4
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 1.0e-104 384.4 326 60.7
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 1.0e-104 384.4 319 60.2
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 1.0e-104 384.4 274 67.9
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 1.0e-104 384.4 304 62.5
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 1.3e-104 384.0 291 61.9
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 1.3e-104 384.0 321 59.5
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 1.7e-104 383.6 288 64.6
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 1.7e-104 383.6 291 62.5
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.7e-104 383.6 327 59.0
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 1.7e-104 383.6 289 63.7
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.2e-104 383.3 323 58.8
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 2.2e-104 383.3 297 61.6
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 2.9e-104 382.9 319 59.9
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 3.8e-104 382.5 297 61.6
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 3.8e-104 382.5 293 63.1
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 3.8e-104 382.5 275 66.9
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 3.8e-104 382.5 297 63.3
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 5.0e-104 382.1 318 59.1
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 5.0e-104 382.1 327 58.7
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 6.5e-104 381.7 284 64.4
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 8.5e-104 381.3 275 65.5
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 8.5e-104 381.3 323 58.2
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 8.5e-104 381.3 292 64.7
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 8.5e-104 381.3 285 64.9
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 1.5e-103 380.6 285 64.6
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 1.9e-103 380.2 320 59.7
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 1.9e-103 380.2 295 63.7
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 1.9e-103 380.2 285 64.9
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 1.9e-103 380.2 286 64.7
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 2.5e-103 379.8 303 62.4
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 2.5e-103 379.8 302 61.6
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 2.5e-103 379.8 285 64.6
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 2.5e-103 379.8 272 65.8
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 3.2e-103 379.4 294 61.9
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 3.2e-103 379.4 274 66.1
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 3.2e-103 379.4 316 59.2
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 4.2e-103 379.0 295 62.7
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 4.2e-103 379.0 294 61.9
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 4.2e-103 379.0 290 64.1
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 4.2e-103 379.0 320 59.4
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 4.2e-103 379.0 295 63.4
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 4.2e-103 379.0 296 61.8
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 5.5e-103 378.6 334 58.4
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 5.5e-103 378.6 274 66.1
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 5.5e-103 378.6 334 58.4
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 5.5e-103 378.6 282 66.0
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 7.2e-103 378.3 297 63.0
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 9.4e-103 377.9 319 58.6
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 1.2e-102 377.5 274 66.1
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 1.2e-102 377.5 314 59.9
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 2.1e-102 376.7 294 61.6
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 2.1e-102 376.7 316 59.2
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 2.7e-102 376.3 274 65.7
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 2.7e-102 376.3 316 58.2
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 2.7e-102 376.3 302 60.9
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 2.7e-102 376.3 265 66.8
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 2.7e-102 376.3 292 61.6
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 3.6e-102 375.9 327 57.5
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 4.7e-102 375.6 275 66.5
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 4.7e-102 375.6 318 57.2
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 4.7e-102 375.6 294 61.2
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 6.1e-102 375.2 309 57.6
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 8.0e-102 374.8 308 61.7
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 8.0e-102 374.8 323 57.0
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 1.0e-101 374.4 308 61.7
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 1.0e-101 374.4 336 57.1
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 1.4e-101 374.0 274 65.7
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 1.4e-101 374.0 312 59.6
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 1.4e-101 374.0 318 60.1
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 3.0e-101 372.9 285 63.5
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 4.0e-101 372.5 274 64.6
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 6.8e-101 371.7 322 56.2
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 8.8e-101 371.3 291 62.5
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 8.8e-101 371.3 302 60.6
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 8.8e-101 371.3 285 61.8
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 2.6e-100 369.8 320 56.9
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 2.6e-100 369.8 326 56.1
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 3.4e-100 369.4 274 67.2
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 4.4e-100 369.0 277 62.8
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 4.4e-100 369.0 278 65.5
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 5.7e-100 368.6 274 63.9
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 9.8e-100 367.9 322 58.1
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 9.8e-100 367.9 285 62.1
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 9.8e-100 367.9 291 58.8
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 1.3e-99 367.5 277 62.5
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 1.3e-99 367.5 285 62.1
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.7e-99 367.1 318 57.2
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 2.8e-99 366.3 285 61.8
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 4.8e-99 365.5 292 59.9
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 8.3e-99 364.8 289 61.6
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 8.3e-99 364.8 326 57.1
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.4e-98 363.2 276 62.3
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 1.1e-95 354.4 283 60.1
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 1.2e-94 350.9 281 60.1
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 6.1e-94 348.6 279 60.6
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 1.0e-93 347.8 274 62.4
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 5.2e-93 345.5 276 59.1
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 4.4e-92 342.4 279 59.9
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 1.7e-91 340.5 321 55.8
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 3.7e-91 339.3 306 56.2
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 6.3e-91 338.6 277 59.2
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 6.3e-91 338.6 310 55.2
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 2.0e-89 333.6 364 50.5
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 1.3e-88 330.9 292 60.6
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 1.3e-88 330.9 291 56.4
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 4.2e-87 325.9 268 60.4
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 1.8e-85 320.5 305 53.1
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.2e-84 317.8 280 56.8
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 2.6e-84 316.6 279 55.2
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 3.9e-80 302.8 289 58.8
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 8.6e-80 301.6 310 51.6
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 1.5e-79 300.8 274 53.3
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 1.6e-78 297.4 252 58.3
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 6.8e-77 292.0 186 75.8
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 4.3e-63 246.1 187 61.5
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 5.6e-63 245.7 247 52.2
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 1.2e-62 244.6 219 55.3
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 4.6e-57 226.1 218 56.0
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 2.8e-54 216.9 174 65.5
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.2e-51 207.2 239 49.4
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 2.7e-49 200.3 158 61.4
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 2.7e-49 200.3 123 74.8
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 4.6e-49 199.5 185 57.3
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 3.3e-47 193.4 158 58.9
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 4.4e-44 183.0 220 48.2
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 6.4e-43 179.1 175 53.1
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 7.9e-41 172.2 138 65.9
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 2.8e-38 163.7 268 41.4
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 3.0e-32 143.7 278 32.4
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 6.9e-29 132.5 90 67.8
SEGI_36179 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 6.9e-29 132.5 181 45.9
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 2.2e-27 127.5 76 77.6
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 2.1e-25 120.9 164 45.7
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 1.8e-21 107.8 75 70.7
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 3.4e-20 103.6 67 76.1
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 6.5e-19 99.4 83 61.4
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 6.5e-19 99.4 89 53.9
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 1.1e-18 98.6 68 75.0
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 2.3e-16 90.9 170 35.9


User provided reference genes

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