Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 1.3e-125 453.0 222 100.0
QL11p051049 Quercus lobata HOM05D005689 ORTHO05D007060 2.2e-67 259.6 142 86.6
Cfa005260 Carpinus fangiana HOM05D005689 ORTHO05D007060 1.4e-66 256.9 146 84.2
CiPaw.05G083600 Carya illinoinensis HOM05D005689 ORTHO05D007060 1.8e-66 256.5 142 85.9
AUR62010026 Chenopodium quinoa HOM05D005689 ORTHO05D007060 3.1e-66 255.8 142 85.2
Actinidia20518 Actinidia chinensis HOM05D005689 ORTHO05D007060 4.1e-66 255.4 142 85.2
Aqoxy6G02106 Aquilegia oxysepala HOM05D005689 ORTHO05D007060 4.1e-66 255.4 144 84.0
MSTRG.19983 Avicennia marina HOM05D005689 ORTHO05D007060 4.1e-66 255.4 142 85.2
Dinv41928 Davidia involucrata HOM05D005689 ORTHO05D007060 4.1e-66 255.4 142 85.9
AUR62013016 Chenopodium quinoa HOM05D005689 ORTHO05D007060 5.4e-66 255.0 142 84.5
GSVIVG01024004001 Vitis vinifera HOM05D005689 ORTHO05D007060 5.4e-66 255.0 142 85.2
Atru.chr5.3380 Acer truncatum HOM05D005689 ORTHO05D007060 7.0e-66 254.6 142 85.2
Duzib132G1056 Durio zibethinus HOM05D005689 ORTHO05D007060 9.1e-66 254.2 142 84.5
Migut.B00070 Erythranthe guttata HOM05D005689 ORTHO05D007060 9.1e-66 254.2 142 84.5
ClCG02G003990 Citrullus lanatus HOM05D005689 ORTHO05D007060 1.2e-65 253.8 144 84.0
MELO3C013345.2 Cucumis melo HOM05D005689 ORTHO05D007060 1.2e-65 253.8 144 84.0
CsaV3_7G001110 Cucumis sativus L. HOM05D005689 ORTHO05D007060 1.2e-65 253.8 144 84.0
Ciclev10029529m.g Citrus clementina HOM05D005689 ORTHO05D007060 1.6e-65 253.4 142 84.5
Gohir.A03G205500 Gossypium hirsutum HOM05D005689 ORTHO05D007060 1.6e-65 253.4 144 83.3
Gorai.005G254700 Gossypium raimondii HOM05D005689 ORTHO05D007060 1.6e-65 253.4 144 83.3
Potri.009G136800 Populus trichocarpa HOM05D005689 ORTHO05D007060 2.0e-65 253.1 142 84.5
Thecc.02G057800 Theobroma cacao HOM05D005689 ORTHO05D007060 2.0e-65 253.1 138 85.5
Hma1.2p1_0032F.1_g019300 Hydrangea macrophylla HOM05D005689 ORTHO05D007060 2.7e-65 252.7 142 84.5
CSS0016500 Camellia sinensis var. sinensis HOM05D005689 ORTHO05D007060 3.5e-65 252.3 138 86.2
Gohir.D02G226800 Gossypium hirsutum HOM05D005689 ORTHO05D007060 3.5e-65 252.3 144 82.6
FAN15G3340 Fragaria x ananassa HOM05D005689 ORTHO05D007060 5.9e-65 251.5 165 73.9
Manes.04G071800 Manihot esculenta HOM05D005689 ORTHO05D007060 5.9e-65 251.5 142 83.1
Actinidia00628 Actinidia chinensis HOM05D005689 ORTHO05D007060 7.7e-65 251.1 142 84.5
Eucgr.I01435 Eucalyptus grandis HOM05D005689 ORTHO05D007060 7.7e-65 251.1 144 81.9
MBI12_g17551_MAGBIO Magnolia biondii HOM05D005689 ORTHO05D007060 7.7e-65 251.1 139 84.9
vmacro02282 Vaccinium macrocarpon HOM05D005689 ORTHO05D007060 7.7e-65 251.1 142 83.8
CANSAT25G1424 Cannabis sativa HOM05D005689 ORTHO05D007060 1.0e-64 250.8 144 82.6
Cc09_g09830 Coffea canephora HOM05D005689 ORTHO05D007060 1.0e-64 250.8 138 84.8
Peaxi162Scf00362g00537 Petunia axillaris HOM05D005689 ORTHO05D007060 1.0e-64 250.8 142 83.1
Sed0024195 Sechium edule HOM05D005689 ORTHO05D007060 1.0e-64 250.8 144 82.6
PGSC0003DMG400006181 Solanum tuberosum HOM05D005689 ORTHO05D007060 1.0e-64 250.8 138 85.5
Nitab4.5_0003698g0100 Nicotiana tabacum HOM05D005689 ORTHO05D007060 1.3e-64 250.4 144 82.6
Duzib248G0128 Durio zibethinus HOM05D005689 ORTHO05D007060 1.7e-64 250.0 142 83.1
PSO675G8512 Papaver somniferum HOM05D005689 ORTHO05D007060 1.7e-64 250.0 144 83.3
Glyma.18G247400 Glycine max HOM05D005689 ORTHO05D007060 2.2e-64 249.6 142 83.1
Lj1g0014054 Lotus japonicus HOM05D005689 ORTHO05D007060 2.2e-64 249.6 142 83.1
MD05G1123300 Malus domestica HOM05D005689 ORTHO05D007060 2.2e-64 249.6 138 84.1
Hund06443 Selenicereus undatus HOM05D005689 ORTHO05D007060 2.2e-64 249.6 142 82.4
TWI31G0315 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 2.2e-64 249.6 138 85.5
TAR376G1105 Trochodendron aralioides HOM05D005689 ORTHO05D007060 2.2e-64 249.6 142 83.8
CiPaw.06G120900 Carya illinoinensis HOM05D005689 ORTHO05D007060 2.9e-64 249.2 142 83.8
Glyma.09G245600 Glycine max HOM05D005689 ORTHO05D007060 2.9e-64 249.2 142 83.1
Medtr7g081040 Medicago truncatula HOM05D005689 ORTHO05D007060 2.9e-64 249.2 142 83.1
PGR142G2796 Punica granatum HOM05D005689 ORTHO05D007060 2.9e-64 249.2 142 81.7
TPR.G32114 Trifolium pratense HOM05D005689 ORTHO05D007060 2.9e-64 249.2 142 83.1
Lalb_Chr21g0306961 Lupinus albus HOM05D005689 ORTHO05D007060 3.8e-64 248.8 142 83.1
PSO541G0653 Papaver somniferum HOM05D005689 ORTHO05D007060 3.8e-64 248.8 144 82.6
Solyc01g111690.3 Solanum lycopersicum HOM05D005689 ORTHO05D007060 3.8e-64 248.8 138 84.8
Sopen01g053730 Solanum pennellii HOM05D005689 ORTHO05D007060 3.8e-64 248.8 138 84.8
Ca_08042_v3 Cicer arietinum L. HOM05D005689 ORTHO05D007060 5.0e-64 248.4 138 84.8
FAN24G0830 Fragaria x ananassa HOM05D005689 ORTHO05D007060 5.0e-64 248.4 138 82.6
Prupe.8G167200 Prunus persica HOM05D005689 ORTHO05D007060 5.0e-64 248.4 138 83.3
VMungo1383G2472 Vigna mungo HOM05D005689 ORTHO05D007060 5.0e-64 248.4 142 82.4
CAN.G588.89 Capsicum annuum HOM05D005689 ORTHO05D007060 6.5e-64 248.1 142 82.4
Cpa.g.sc20.100 Carica papaya HOM05D005689 ORTHO05D007060 6.5e-64 248.1 142 82.4
unitig_0.g36 Utricularia gibba HOM05D005689 ORTHO05D007060 6.5e-64 248.1 138 84.1
EL10Ac9g21356 Beta vulgaris HOM05D005689 ORTHO05D007060 8.5e-64 247.7 142 82.4
FvH4_2g15500 Fragaria vesca HOM05D005689 ORTHO05D007060 8.5e-64 247.7 138 82.6
Mapoly0010s0009 Marchantia polymorpha HOM05D005689 ORTHO05D007060 8.5e-64 247.7 140 81.4
Sc18g0006380 Simmondsia chinensis HOM05D005689 ORTHO05D007060 1.1e-63 247.3 142 81.0
Lsat_1_v5_gn_8_123161 Lactuca sativa HOM05D005689 ORTHO05D007060 1.5e-63 246.9 142 81.7
Phvul.008G049900 Phaseolus vulgaris HOM05D005689 ORTHO05D007060 1.5e-63 246.9 142 81.7
RcHm_v2.0_Chr6g0278501 Rosa chinensis HOM05D005689 ORTHO05D007060 1.5e-63 246.9 138 82.6
FAN27G1498 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.9e-63 246.5 138 81.9
MD10G1126300 Malus domestica HOM05D005689 ORTHO05D007060 2.5e-63 246.1 138 82.6
FAN20G0310 Fragaria x ananassa HOM05D005689 ORTHO05D007060 4.2e-63 245.4 138 81.9
Zm00001eb331790 Zea mays HOM05D005689 ORTHO05D007060 4.2e-63 245.4 142 80.3
ECA233G5373 Erigeron canadensis HOM05D005689 ORTHO05D007060 9.5e-63 244.2 136 83.8
TWI75G0361 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 9.5e-63 244.2 138 83.3
Os09g0541500 Oryza sativa ssp. japonica HOM05D005689 ORTHO05D007060 1.2e-62 243.8 141 79.4
CDE02G0259 Ceratophyllum demersum HOM05D005689 ORTHO05D007060 2.7e-62 242.7 144 79.9
HanXRQChr03g0080211 Helianthus annuus HOM05D005689 ORTHO05D007060 2.7e-62 242.7 136 83.1
THA.LOC104824758 Tarenaya hassleriana HOM05D005689 ORTHO05D007060 4.7e-62 241.9 137 83.9
Thhalv10026520m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 6.1e-62 241.5 137 83.2
Sp4g00120 Schrenkiella parvula HOM05D005689 ORTHO05D007060 1.4e-61 240.4 138 81.2
AL4G10060 Arabidopsis lyrata HOM05D005689 ORTHO05D007060 1.8e-61 240.0 138 81.9
DCAR_030423 Daucus carota HOM05D005689 ORTHO05D007060 1.8e-61 240.0 142 81.0
Nitab4.5_0000283g0450 Nicotiana tabacum HOM05D005689 ORTHO05D007060 1.8e-61 240.0 152 77.6
DCAR_003179 Daucus carota HOM05D005689 ORTHO05D007060 2.3e-61 239.6 141 80.9
AT2G20930 Arabidopsis thaliana HOM05D005689 ORTHO05D007060 4.0e-61 238.8 138 81.2
HPP92_012947 Vanilla planifolia HOM05D005689 ORTHO05D007060 6.8e-61 238.0 144 78.5
Carub.0004s0002 Capsella rubella HOM05D005689 ORTHO05D007060 8.8e-61 237.7 138 80.4
SalBow1G8746 Salvia bowleyana HOM05D005689 ORTHO05D007060 8.8e-61 237.7 142 78.9
SalBow5G2226 Salvia bowleyana HOM05D005689 ORTHO05D007060 8.8e-61 237.7 167 70.7
BcaNung01978 Brassica carinata HOM05D005689 ORTHO05D007060 2.0e-60 236.5 137 81.0
CARHR174210 Cardamine hirsuta HOM05D005689 ORTHO05D007060 2.0e-60 236.5 138 80.4
BcaB08g34950 Brassica carinata HOM05D005689 ORTHO05D007060 3.4e-60 235.7 138 79.0
BcaC07g41181 Brassica carinata HOM05D005689 ORTHO05D007060 3.4e-60 235.7 138 79.0
Oeu019918.2 Olea europaea HOM05D005689 ORTHO05D007060 3.4e-60 235.7 168 69.6
Psat3g100360 Pisum sativum HOM05D005689 ORTHO05D007060 9.8e-60 234.2 130 83.8
Aa31LG6G16620 Aethionema arabicum HOM05D005689 ORTHO05D007060 2.2e-59 233.0 137 78.8
A06p48990 Brassica napus HOM05D005689 ORTHO05D007060 2.8e-59 232.6 137 79.6
BraA06t27765Z Brassica rapa HOM05D005689 ORTHO05D007060 2.8e-59 232.6 137 79.6
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 2.8e-59 232.6 137 81.8
Thhalv10000369m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 3.7e-59 232.3 138 79.7
C07p63680 Brassica napus HOM05D005689 ORTHO05D007060 1.4e-58 230.3 137 78.1
BolC7t46781H Brassica oleracea HOM05D005689 ORTHO05D007060 1.4e-58 230.3 137 78.1
Pp3c13_19460 Physcomitrium patens HOM05D005689 ORTHO05D007060 1.6e-57 226.9 142 72.5
Aa31LG7G15690 Aethionema arabicum HOM05D005689 ORTHO05D007060 2.0e-57 226.5 166 67.5
Sabra09G0106300 Salix brachista HOM05D005689 ORTHO05D007060 4.5e-57 225.3 206 58.7
ATR0315G041 Amborella trichopoda HOM05D005689 ORTHO05D007060 7.7e-57 224.6 127 81.9
A09p58620 Brassica napus HOM05D005689 ORTHO05D007060 1.0e-56 224.2 138 76.8
C08p41910 Brassica napus HOM05D005689 ORTHO05D007060 1.0e-56 224.2 138 76.8
BolC8t51754H Brassica oleracea HOM05D005689 ORTHO05D007060 1.0e-56 224.2 138 76.8
BraA09t41249Z Brassica rapa HOM05D005689 ORTHO05D007060 1.0e-56 224.2 138 76.8
SalBow5G0288 Salvia bowleyana HOM05D005689 ORTHO05D007060 6.6e-56 221.5 154 71.4
arahy.Tifrunner.gnm1.ann1.9U6RFS Arachis hypogaea HOM05D005689 ORTHO05D007060 1.5e-55 220.3 205 57.6
Sed0010745 Sechium edule HOM05D005689 ORTHO05D007060 8.0e-54 214.5 144 72.9
Pp3c12_10830 Physcomitrium patens HOM05D005689 ORTHO05D007060 2.0e-52 209.9 144 65.3
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 2.2e-51 206.5 138 65.9
BcaC07g41184 Brassica carinata HOM05D005689 ORTHO05D007060 4.9e-51 205.3 138 70.3
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 1.0e-48 197.6 128 67.2
HPP92_007243 Vanilla planifolia HOM05D005689 ORTHO05D007060 3.0e-48 196.1 119 76.5
CARHR111830 Cardamine hirsuta HOM05D005689 ORTHO05D007060 5.0e-48 195.3 112 82.1
SGA_v2.0_scaffold80G25838 Striga asiatica HOM05D005689 ORTHO05D007060 8.9e-45 184.5 160 58.8
Nitab4.5_0000079g0270 Nicotiana tabacum HOM05D005689 ORTHO05D007060 3.4e-44 182.6 100 85.0
Nn6g31939 Nelumbo nucifera HOM05D005689 ORTHO05D007060 1.4e-42 177.2 97 83.5
arahy.Tifrunner.gnm1.ann1.B1HGXN Arachis hypogaea HOM05D005689 ORTHO05D007060 7.0e-42 174.9 99 81.8
Potri.004G176500 Populus trichocarpa HOM05D005689 ORTHO05D007060 2.3e-37 159.8 120 66.7
Cre03.g165650 Chlamydomonas reinhardtii HOM05D005689 ORTHO05D007060 7.6e-28 128.3 145 45.5
Rhsim11G0192800 Rhododendron simsii HOM05D005689 ORTHO05D007060 4.1e-26 122.5 72 81.9
AUR62017814 Chenopodium quinoa HOM05D005689 ORTHO05D007060 6.0e-25 118.6 71 78.9
AUR62003497 Chenopodium quinoa HOM05D005689 ORTHO05D007060 5.1e-24 115.5 71 76.1
Oeu028973.1 Olea europaea HOM05D005689 ORTHO05D007060 8.6e-24 114.8 72 76.4
RcHm_v2.0_Chr4g0392001 Rosa chinensis HOM05D005689 ORTHO05D007060 6.2e-22 108.6 140 43.6
Ah.01g023120 Amaranthus hybridus HOM05D005689 ORTHO05D007060 1.8e-13 80.5 43 81.4
MCO02G011 Micromonas commoda HOM05D005689 ORTHO05D007060 5.3e-13 79.0 157 29.9
PRCOL_00005825 Prasinoderma coloniale HOM05D005689 ORTHO05D007060 7.6e-12 75.1 117 36.8
SGA_v2.0_scaffold199G41205 Striga asiatica HOM05D005689 ORTHO05D007060 1.2e-09 67.8 53 58.5
HanXRQChr05g0150591 Helianthus annuus HOM05D005689 ORTHO05D007060 1.8e-08 63.9 48 58.3
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.0e-08 63.2 139 28.1
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 3.9e-08 62.8 138 28.3
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 5.1e-08 62.4 138 27.5
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 5.1e-08 62.4 138 27.5
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 5.1e-08 62.4 138 27.5
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 5.1e-08 62.4 138 27.5
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 6.7e-08 62.0 139 29.5
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 6.7e-08 62.0 139 29.5
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 6.7e-08 62.0 139 29.5
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 6.7e-08 62.0 138 27.5
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 6.7e-08 62.0 138 26.8
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 6.7e-08 62.0 139 28.1
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 6.7e-08 62.0 139 28.1
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 1.1e-07 61.2 138 26.8
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 1.1e-07 61.2 138 26.1
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 1.5e-07 60.8 147 27.9
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 1.5e-07 60.8 167 26.3
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 1.5e-07 60.8 138 26.8
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 2.5e-07 60.1 138 27.5
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 3.3e-07 59.7 138 26.8
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 4.3e-07 59.3 139 26.6
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 4.3e-07 59.3 138 26.8
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 5.6e-07 58.9 139 26.6
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 7.4e-07 58.5 136 28.7
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 9.6e-07 58.2 139 26.6
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 9.6e-07 58.2 139 28.1
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 9.6e-07 58.2 139 28.1
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 1.3e-06 57.8 138 26.1
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 1.3e-06 57.8 138 26.8
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 1.3e-06 57.8 138 25.4
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 1.3e-06 57.8 138 25.4
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 1.3e-06 57.8 139 27.3
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 1.3e-06 57.8 138 25.4
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 1.3e-06 57.8 36 66.7
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 2.1e-06 57.0 138 25.4
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 2.8e-06 56.6 139 28.8
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 3.6e-06 56.2 165 25.5
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 3.6e-06 56.2 138 26.1
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 3.6e-06 56.2 138 26.1
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 4.8e-06 55.8 142 24.6
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 4.8e-06 55.8 138 25.4


User provided reference genes

Program Settings