Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_29864 Sequoiadendron giganteum HOM05D006315 ORTHO05D008052 6.2e-194 680.6 350 100.0
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 7.6e-99 364.8 256 68.4
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 3.2e-97 359.4 300 61.0
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 5.4e-97 358.6 339 56.3
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 5.4e-97 358.6 338 55.3
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 2.7e-96 356.3 329 55.6
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 3.5e-96 355.9 336 55.4
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 2.3e-95 353.2 259 66.4
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 2.3e-95 353.2 348 55.2
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 2.3e-95 353.2 290 59.7
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 3.9e-95 352.4 294 58.5
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 3.9e-95 352.4 258 65.9
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 5.1e-95 352.1 345 53.9
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 6.6e-95 351.7 347 54.5
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 6.6e-95 351.7 299 58.5
FvH4_6g05840 Fragaria vesca HOM05D006315 ORTHO05D008052 8.7e-95 351.3 344 55.5
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 8.7e-95 351.3 288 59.7
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 1.1e-94 350.9 341 54.0
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 1.5e-94 350.5 329 55.6
AUR62000828 Chenopodium quinoa HOM05D006315 ORTHO05D008052 1.5e-94 350.5 311 56.6
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 2.5e-94 349.7 348 55.5
FAN05G4943 Fragaria x ananassa HOM05D006315 ORTHO05D008052 3.3e-94 349.4 343 54.8
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 3.3e-94 349.4 289 59.5
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 7.3e-94 348.2 265 63.0
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 7.3e-94 348.2 281 60.5
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 7.3e-94 348.2 344 54.4
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 9.6e-94 347.8 351 53.3
DCAR_022164 Daucus carota HOM05D006315 ORTHO05D008052 1.2e-93 347.4 261 64.4
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 1.2e-93 347.4 352 52.6
Psat6g151200 Pisum sativum HOM05D006315 ORTHO05D008052 1.6e-93 347.1 345 52.5
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 1.6e-93 347.1 334 53.3
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 2.1e-93 346.7 256 64.8
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 2.8e-93 346.3 259 64.5
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 2.8e-93 346.3 334 54.2
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 3.6e-93 345.9 348 54.3
FAN02G1008 Fragaria x ananassa HOM05D006315 ORTHO05D008052 6.2e-93 345.1 348 54.0
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 6.2e-93 345.1 257 64.6
RcHm_v2.0_Chr3g0454751 Rosa chinensis HOM05D006315 ORTHO05D008052 8.1e-93 344.7 336 53.0
FAN14G1304 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.1e-92 344.4 351 54.4
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 1.1e-92 344.4 344 54.7
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 1.8e-92 343.6 346 52.9
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 1.8e-92 343.6 346 52.9
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 1.8e-92 343.6 296 57.1
FAN14G3373 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.4e-92 343.2 351 54.4
Ah.06g189370 Amaranthus hybridus HOM05D006315 ORTHO05D008052 5.3e-92 342.0 292 58.9
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 5.3e-92 342.0 275 61.5
MSTRG.16964 Avicennia marina HOM05D006315 ORTHO05D008052 6.9e-92 341.7 299 58.2
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 6.9e-92 341.7 350 54.3
Potri.013G020800 Populus trichocarpa HOM05D006315 ORTHO05D008052 6.9e-92 341.7 339 53.4
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 6.9e-92 341.7 337 53.4
TWI36G1375 Tripterygium wilfordii HOM05D006315 ORTHO05D008052 6.9e-92 341.7 343 54.2
unitig_37.g12631 Utricularia gibba HOM05D006315 ORTHO05D008052 9.0e-92 341.3 298 56.4
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 1.5e-91 340.5 310 56.1
Ca_10111_v3 Cicer arietinum L. HOM05D006315 ORTHO05D008052 1.5e-91 340.5 292 57.9
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 1.5e-91 340.5 284 57.4
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 2.6e-91 339.7 350 53.7
Sed0013855 Sechium edule HOM05D006315 ORTHO05D008052 4.4e-91 339.0 256 62.1
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 9.9e-91 337.8 348 51.4
MD12G1219300 Malus domestica HOM05D006315 ORTHO05D008052 1.3e-90 337.4 340 52.1
ClCG02G015800 Citrullus lanatus HOM05D006315 ORTHO05D008052 1.7e-90 337.0 336 51.5
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 2.2e-90 336.7 295 56.3
PSO675G8687 Papaver somniferum HOM05D006315 ORTHO05D008052 2.9e-90 336.3 352 51.4
Nitab4.5_0004395g0040 Nicotiana tabacum HOM05D006315 ORTHO05D008052 4.9e-90 335.5 345 53.3
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 6.4e-90 335.1 263 59.3
CsaV3_2G005300 Cucumis sativus L. HOM05D006315 ORTHO05D008052 1.1e-89 334.3 333 52.0
FAN05G5779 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.4e-89 333.2 363 51.2
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 4.2e-89 332.4 334 51.8
Migut.B01035 Erythranthe guttata HOM05D006315 ORTHO05D008052 7.1e-89 331.6 335 52.2
Sp2g20750 Schrenkiella parvula HOM05D006315 ORTHO05D008052 9.3e-89 331.3 335 51.6
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 1.2e-88 330.9 331 52.3
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 1.2e-88 330.9 345 51.6
Thhalv10004542m.g Eutrema salsugineum HOM05D006315 ORTHO05D008052 1.2e-88 330.9 314 54.1
AUR62005146 Chenopodium quinoa HOM05D006315 ORTHO05D008052 4.6e-88 328.9 381 48.8
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 4.6e-88 328.9 343 51.9
CARHR186120 Cardamine hirsuta HOM05D006315 ORTHO05D008052 7.8e-88 328.2 301 53.8
AagrBONN_evm.TU.Sc2ySwM_368.1535 Anthoceros agrestis HOM05D006315 ORTHO05D008052 3.9e-87 325.9 253 62.5
A09p05350 Brassica napus HOM05D006315 ORTHO05D008052 3.9e-87 325.9 345 49.9
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 3.9e-87 325.9 297 53.9
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 3.9e-87 325.9 297 53.9
BraA09t36173Z Brassica rapa HOM05D006315 ORTHO05D008052 3.9e-87 325.9 345 49.9
Medtr1g082900 Medicago truncatula HOM05D006315 ORTHO05D008052 3.9e-87 325.9 333 50.5
AT5G27560 Arabidopsis thaliana HOM05D006315 ORTHO05D008052 5.1e-87 325.5 246 62.2
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 5.1e-87 325.5 340 51.2
Hund07070 Selenicereus undatus HOM05D006315 ORTHO05D008052 1.5e-86 323.9 344 52.3
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 5.6e-86 322.0 289 54.3
PSO541G4223 Papaver somniferum HOM05D006315 ORTHO05D008052 1.6e-85 320.5 332 51.8
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 6.2e-85 318.5 338 49.1
SGA_v2.0_scaffold13G06358 Striga asiatica HOM05D006315 ORTHO05D008052 1.4e-84 317.4 261 60.2
Gohir.A11G265000 Gossypium hirsutum HOM05D006315 ORTHO05D008052 4.0e-84 315.8 230 65.2
Lj5g0002172 Lotus japonicus HOM05D006315 ORTHO05D008052 1.5e-83 313.9 307 52.1
MELO3C004257.2 Cucumis melo HOM05D006315 ORTHO05D008052 5.8e-83 312.0 299 51.8
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 1.7e-82 310.5 226 64.6
Pp3c1_23410 Physcomitrium patens HOM05D006315 ORTHO05D008052 5.1e-79 298.9 356 47.8
Mapoly0046s0092 Marchantia polymorpha HOM05D006315 ORTHO05D008052 5.6e-78 295.4 371 46.1
Atru.chr2.406 Acer truncatum HOM05D006315 ORTHO05D008052 5.3e-76 288.9 256 56.6
EL10Ac4g09351 Beta vulgaris HOM05D006315 ORTHO05D008052 6.4e-74 282.0 300 51.7
Haze_04196 Corylus avellana HOM05D006315 ORTHO05D008052 5.1e-71 272.3 266 53.8
Zm00001eb377150 Zea mays HOM05D006315 ORTHO05D008052 5.8e-67 258.8 256 52.0
SMO116G0320 Selaginella moellendorffii HOM05D006315 ORTHO05D008052 1.7e-66 257.3 224 54.5
Nitab4.5_0000137g0320 Nicotiana tabacum HOM05D006315 ORTHO05D008052 9.0e-60 235.0 174 64.4
Lj5A533G15 Lonicera japonica HOM05D006315 ORTHO05D008052 5.0e-58 229.2 162 66.0
arahy.Tifrunner.gnm1.ann1.SMKB8G Arachis hypogaea HOM05D006315 ORTHO05D008052 1.1e-57 228.0 352 41.5
Eucgr.B01970 Eucalyptus grandis HOM05D006315 ORTHO05D008052 2.0e-51 207.2 191 55.5
Cre17.g739550 Chlamydomonas reinhardtii HOM05D006315 ORTHO05D008052 4.7e-48 196.1 292 39.0
Eucgr.B01875 Eucalyptus grandis HOM05D006315 ORTHO05D008052 7.9e-48 195.3 146 64.4
HPP92_002878 Vanilla planifolia HOM05D006315 ORTHO05D008052 4.4e-46 189.5 137 67.2
HPP92_002820 Vanilla planifolia HOM05D006315 ORTHO05D008052 5.7e-46 189.1 164 57.3
MCO15G525 Micromonas commoda HOM05D006315 ORTHO05D008052 2.2e-45 187.2 277 40.8
Lj5C470G0 Lonicera japonica HOM05D006315 ORTHO05D008052 1.6e-40 171.0 125 64.0
Lj5C532G5 Lonicera japonica HOM05D006315 ORTHO05D008052 1.6e-40 171.0 125 64.0
Actinidia23634 Actinidia chinensis HOM05D006315 ORTHO05D008052 2.3e-39 167.2 131 61.8
PRCOL_00006277 Prasinoderma coloniale HOM05D006315 ORTHO05D008052 5.0e-34 149.4 286 34.3
EL10As4g23462 Beta vulgaris HOM05D006315 ORTHO05D008052 9.4e-25 118.6 106 56.6
Aa31LG11G9280 Aethionema arabicum HOM05D006315 ORTHO05D059511 1.2e-16 91.7 92 48.9
Hma1.2p1_0928F.1_g237790 Hydrangea macrophylla HOM05D006315 ORTHO05D008052 2.8e-16 90.5 158 36.7
Lj5P531T4 Lonicera japonica HOM05D006315 ORTHO05D008052 1.0e-15 88.6 84 52.4
Lj5P469T8 Lonicera japonica HOM05D006315 ORTHO05D008052 4.4e-14 83.2 53 71.7
arahy.Tifrunner.gnm1.ann1.T3AGRQ Arachis hypogaea HOM05D006315 ORTHO05D008052 2.4e-12 77.4 63 55.6
Lj5A532G12 Lonicera japonica HOM05D006315 ORTHO05D008052 4.3e-09 66.6 207 27.1
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 1.0e-07 62.0 112 38.4


User provided reference genes

Program Settings